genome.fa.s19.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  226  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67010966--67011024	19	3.0	21	85	7	70	38	10	10	40	1.73
67010975--67011063	21	4.6	19	76	19	78	34	7	12	44	1.71
67010986--67011074	37	2.4	37	83	9	119	31	8	12	47	1.72
67016424--67016480	5	11.8	5	90	9	84	84	15	0	0	0.63
67016424--67016495	15	4.9	15	85	11	80	84	12	2	0	0.72
67017359--67018720	82	16.9	81	89	5	1966	24	16	21	38	1.92
67017359--67018720	245	5.6	244	88	5	1988	24	16	21	38	1.92
67018501--67018740	75	3.1	75	77	4	176	24	17	21	36	1.95
67018931--67019012	30	2.7	29	85	7	110	37	19	2	40	1.65
67019458--67019486	15	2.0	15	93	6	51	65	0	34	0	0.93
67019582--67019634	29	1.9	27	85	11	72	77	0	22	0	0.77
67019576--67019625	24	2.1	25	85	7	68	74	0	26	0	0.83
67019582--67019632	16	3.0	17	82	5	59	78	0	21	0	0.75
67020170--67020207	20	1.9	20	88	0	58	36	13	7	42	1.73
67020327--67020372	17	2.6	17	83	12	58	30	17	6	45	1.73
67020420--67020507	17	5.2	16	69	10	59	34	12	12	40	1.81
67020423--67020509	34	2.5	35	81	5	97	34	13	12	39	1.83
67020554--67020639	36	2.4	36	94	0	145	29	15	12	43	1.83
67020554--67020874	17	17.4	19	70	18	157	31	11	11	45	1.77
67020584--67020733	81	1.9	80	85	4	212	30	11	10	47	1.73
67020689--67020843	52	2.9	52	80	9	154	33	10	11	43	1.76
67020789--67020874	35	2.4	36	83	11	115	31	9	12	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67021462--67021492	15	2.1	15	100	0	62	45	22	12	19	1.84
67022434--67022458	12	2.1	12	100	0	50	16	24	8	52	1.70
67022846--67022876	7	4.3	7	92	8	53	48	38	0	12	1.42
67022846--67022876	15	2.1	14	94	5	53	48	38	0	12	1.42
67023319--67023373	14	3.9	14	76	4	56	45	38	0	16	1.47
67023319--67023383	22	3.0	21	88	2	85	46	38	0	15	1.46
67023725--67024017	115	2.6	115	78	4	281	29	20	18	31	1.97
67023856--67024220	198	1.8	199	84	5	497	27	19	19	33	1.96
67024031--67024670	114	5.6	114	80	4	625	26	22	19	31	1.98
67024021--67024670	227	2.9	225	80	5	630	26	22	19	32	1.98
67025728--67026672	285	3.3	281	91	3	1504	31	11	6	50	1.63
67027107--67027184	4	20.0	4	79	17	67	0	29	0	70	0.87
67027072--67027193	44	2.7	44	84	12	151	0	32	0	67	0.91
67035557--67035774	51	4.3	51	88	0	321	35	15	21	27	1.93
67046293--67046330	20	1.9	20	89	10	60	55	15	10	18	1.68
67051655--67051687	16	2.1	16	100	0	66	33	0	6	60	1.21
67064026--67064144	62	1.9	62	81	13	145	50	4	9	36	1.54
67064275--67064315	3	13.7	3	100	0	82	68	0	0	31	0.90
67065580--67065630	20	2.3	23	83	12	72	35	0	3	60	1.15
67070606--67070639	14	2.5	14	95	4	61	14	0	35	50	1.44
67079029--67079136	54	2.0	54	100	0	216	31	16	18	33	1.93
67079421--67079465	23	1.9	24	95	4	83	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67079456--67079497	16	2.6	16	92	0	66	47	2	7	42	1.43
67079563--67079590	9	3.1	9	100	0	56	32	0	10	57	1.33
67083792--67083830	21	1.9	20	89	5	60	56	5	5	33	1.43
67084199--67084229	9	3.4	9	90	0	53	25	12	22	38	1.90
67084283--67084319	9	4.1	9	89	0	56	48	13	8	29	1.71
67084532--67084591	30	2.0	31	83	3	77	20	38	0	41	1.52
67087888--67087916	8	3.6	8	100	0	58	24	13	27	34	1.93
67088003--67088055	23	2.3	23	93	0	97	20	20	26	32	1.98
67097872--67098047	94	1.9	93	87	8	259	26	12	19	41	1.87
67102542--67102676	67	2.0	67	100	0	270	20	16	22	40	1.91
67103082--67103187	52	2.0	52	98	0	203	26	29	5	38	1.79
67105403--67105452	23	2.2	23	85	7	66	24	0	16	60	1.36
67120736--67120766	15	2.1	15	100	0	62	45	12	0	41	1.42
67128821--67128867	18	2.5	20	86	13	80	8	19	25	46	1.77
67131283--67131318	16	2.2	16	100	0	72	16	19	11	52	1.73
67134776--67134832	28	2.1	28	90	3	89	28	1	0	70	0.98
67135327--67135357	12	2.6	12	94	0	53	41	19	0	38	1.51
67137875--67137945	31	2.3	31	80	0	88	45	9	9	35	1.71
67139178--67139390	110	1.9	114	84	7	294	44	16	8	30	1.79
67140005--67140096	44	2.1	42	78	11	96	28	4	11	55	1.55
67140877--67140915	10	3.8	10	80	6	51	71	0	0	28	0.86
67140873--67140918	21	2.2	21	100	0	92	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67147754--67147796	17	2.4	16	82	17	50	67	2	0	30	1.03
67147756--67147796	18	2.2	18	87	12	57	70	2	0	26	0.99
67149330--67149408	40	2.0	40	89	0	122	20	27	29	22	1.98
67149546--67149599	22	2.5	22	85	11	76	22	27	1	48	1.61
67149561--67149660	51	2.0	51	88	4	148	26	24	2	48	1.62
67151727--67151767	7	6.0	7	85	2	57	39	43	4	12	1.63
67151727--67151762	14	2.6	14	100	0	72	36	44	5	13	1.68
67154868--67154907	21	1.9	21	85	10	55	55	2	2	40	1.27
67165341--67165383	21	2.1	20	82	4	50	41	9	6	41	1.64
67168730--67168775	22	2.1	22	84	4	58	47	6	13	32	1.68
67169949--67169986	18	2.1	18	85	9	51	55	10	2	31	1.48
67171039--67171507	156	3.0	156	95	0	848	31	16	22	28	1.96
67173808--67173917	54	2.0	54	82	0	130	25	18	18	38	1.93
67173861--67174329	156	3.0	156	96	0	866	28	22	16	31	1.96
67179056--67179111	26	2.2	25	81	12	62	37	17	12	32	1.88
67180373--67180405	3	11.0	3	100	0	66	33	0	0	66	0.92
67186932--67186980	19	2.6	19	86	0	71	59	0	2	38	1.09
67188166--67188218	26	2.0	26	92	0	88	41	11	7	39	1.69
67198236--67198289	26	2.1	26	100	0	108	25	16	7	50	1.71
67198382--67198444	31	2.1	30	87	3	90	26	7	7	57	1.55
67198305--67198607	149	2.0	150	83	4	380	33	10	10	44	1.74
67202471--67202901	143	2.9	146	83	3	501	48	19	7	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67205073--67205113	3	14.0	3	84	5	57	2	63	0	34	1.08
67217462--67217497	13	2.7	13	91	4	54	63	0	2	33	1.08
67221841--67221905	29	2.2	29	83	8	78	46	9	4	40	1.57
67232867--67233318	231	2.0	226	81	7	529	44	12	11	32	1.77
67237217--67237259	20	2.2	20	100	0	86	55	30	0	13	1.39
67238718--67238771	21	2.6	21	93	0	90	29	18	16	35	1.93
67245507--67245625	51	2.3	52	92	1	195	37	5	16	39	1.73
67252833--67253172	185	1.9	181	85	6	470	36	15	18	29	1.92
67259237--67259262	6	4.3	6	100	0	52	46	0	34	19	1.50
67266546--67266904	179	2.0	178	97	0	673	27	14	17	40	1.88
67268225--67268266	21	2.0	21	95	4	77	42	4	4	47	1.45
67276951--67277020	31	2.3	30	80	11	79	45	18	11	24	1.82
67284345--67284390	23	2.0	23	83	8	58	65	0	2	32	1.05
67285154--67285189	4	9.0	4	100	0	72	25	0	25	50	1.50
67285450--67285476	2	13.5	2	100	0	54	48	51	0	0	1.00
67287026--67287077	23	2.3	23	100	0	104	48	17	11	23	1.79
67293464--67293523	27	2.2	28	87	3	86	48	5	6	40	1.51
67296308--67296352	16	2.7	17	86	6	65	42	0	0	57	0.98
67299501--67299551	18	2.8	19	77	14	54	60	27	5	5	1.43
67301048--67301964	383	2.4	383	81	8	1038	30	19	14	34	1.92
67304934--67304996	30	2.1	30	85	2	83	50	4	6	38	1.49
67309037--67309129	31	3.1	30	74	14	93	47	19	12	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67310906--67310951	2	23.0	2	100	0	92	50	0	50	0	1.00
67311772--67312652	362	2.5	358	85	6	1236	38	22	8	30	1.83
67314727--67314759	2	16.5	2	100	0	66	0	48	0	51	1.00
67323918--67323969	19	2.8	18	76	5	50	55	1	1	40	1.22
67324141--67324616	216	2.2	216	90	0	738	33	16	15	34	1.91
67324958--67324999	3	14.0	3	94	0	75	33	35	0	30	1.58
67339563--67339651	31	2.9	31	96	0	160	32	2	30	34	1.70
67341801--67341843	22	2.0	22	85	0	59	32	20	6	39	1.80
67341847--67342045	15	13.5	15	74	3	161	27	26	23	23	2.00
67341847--67342015	29	5.8	29	82	2	149	27	27	22	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230