genome.fa.s19.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  110  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31875455--31875502	25	1.9	25	82	0	60	27	8	2	62	1.35
31877250--31877278	14	2.1	14	100	0	58	79	0	6	13	0.93
31877273--31877308	16	2.2	16	100	0	72	77	5	11	5	1.10
31898465--31898671	78	2.6	79	88	3	303	26	28	21	24	1.99
31898465--31898724	40	6.6	40	86	5	298	26	28	21	24	1.99
31898656--31898733	40	1.9	41	82	10	97	26	28	21	23	1.99
31905409--31905671	120	2.2	119	82	4	316	26	28	20	24	1.99
31905409--31905618	40	5.3	40	92	0	314	26	29	20	23	1.99
31905412--31905671	80	3.3	80	86	3	267	25	28	21	24	1.99
31905603--31905680	40	1.9	41	82	10	97	26	28	21	23	1.99
31911932--31912082	28	5.4	28	91	1	205	32	28	13	25	1.93
31914152--31914181	10	2.9	10	95	5	51	80	6	3	10	1.01
31915365--31915470	48	2.2	47	85	9	135	59	1	24	14	1.45
31917141--31917187	20	2.3	20	85	0	67	29	36	12	21	1.91
31919464--31919495	16	2.0	16	100	0	64	12	12	25	50	1.75
31927874--31927911	10	3.8	10	83	13	51	26	15	28	28	1.96
31927876--31927922	20	2.3	20	92	0	76	23	17	34	25	1.96
31929438--31929462	12	2.1	12	100	0	50	24	28	0	48	1.52
31931664--31931715	13	3.9	13	78	12	52	75	3	11	9	1.18
31931758--31931784	1	27.0	1	100	0	54	100	0	0	0	0.00
31931855--31931898	19	2.2	19	84	12	52	63	9	2	25	1.35
31932760--31932797	15	2.4	16	86	13	60	71	0	21	7	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31932880--31932913	18	1.9	18	88	5	52	52	2	35	8	1.47
31936014--31936048	11	3.2	11	83	0	52	17	8	2	71	1.23
31937548--31937585	10	3.8	10	83	13	51	26	15	28	28	1.96
31937550--31937596	20	2.3	20	92	0	76	23	17	34	25	1.96
31942223--31942276	20	2.8	19	77	5	63	18	7	0	74	1.05
31949969--31950002	13	2.7	13	90	4	52	8	5	5	79	1.05
31953942--31953988	20	2.3	20	85	0	67	23	10	34	31	1.89
31958503--31958549	20	2.3	20	85	0	67	29	36	12	21	1.91
31962451--31962502	23	2.3	22	75	21	54	9	23	1	65	1.32
31969107--31969141	17	2.1	17	89	10	54	71	2	20	5	1.19
31978028--31978086	21	2.7	21	75	17	57	64	1	25	8	1.31
31978033--31978084	27	1.9	27	84	0	68	65	1	25	7	1.30
31986037--31986133	30	3.2	30	75	2	106	28	26	15	28	1.96
31991091--31991134	22	2.0	22	95	0	79	34	4	36	25	1.76
31994803--31994875	29	2.5	29	90	0	119	46	13	9	30	1.75
31998145--31998241	30	3.2	30	75	2	106	28	26	15	28	1.96
31999854--31999888	15	2.4	14	90	4	52	85	0	8	5	0.73
31999974--31999998	9	2.8	9	100	0	50	84	8	0	8	0.79
32000001--32000058	15	4.2	13	72	14	53	74	1	13	10	1.15
32000935--32001005	37	1.9	37	86	11	101	76	2	18	2	1.04
32000945--32000994	6	8.2	6	83	14	50	76	2	20	2	0.99
32001055--32001085	12	2.6	12	100	0	62	45	12	16	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32003266--32003362	30	3.2	30	75	2	106	28	26	15	28	1.96
32005256--32005296	16	2.6	16	88	0	64	19	9	4	65	1.40
32006824--32006867	22	2.0	22	95	0	79	34	4	36	25	1.76
32010525--32010571	20	2.3	20	85	0	67	29	36	12	21	1.91
32012048--32012118	11	6.0	11	73	19	54	69	5	7	18	1.32
32012049--32012131	39	2.2	38	85	8	107	71	4	8	15	1.28
32012049--32012131	38	2.2	38	84	2	96	71	4	8	15	1.28
32013194--32013301	6	17.7	6	66	6	56	69	3	19	7	1.28
32013198--32013256	18	3.3	18	80	0	73	71	6	16	5	1.26
32013382--32013487	48	2.2	47	85	9	135	59	1	24	14	1.45
32015156--32015202	20	2.3	20	85	0	67	29	36	12	21	1.91
32021999--32022027	15	1.9	15	100	0	58	72	6	6	13	1.26
32024279--32024332	23	2.2	25	78	15	60	62	3	22	11	1.43
32029381--32029474	46	2.0	46	89	4	145	24	18	23	34	1.96
32039227--32039255	13	2.2	13	100	0	58	27	0	10	62	1.28
32040503--32040538	11	3.3	11	96	0	63	75	5	2	16	1.12
32041502--32041549	15	3.3	14	88	5	69	79	0	16	4	0.89
32041498--32041549	21	2.5	21	90	3	79	76	0	19	3	0.93
32043693--32043721	13	2.2	13	100	0	58	27	0	10	62	1.28
32048717--32048770	20	2.7	20	82	0	63	24	20	18	37	1.94
32048717--32048790	30	2.5	30	86	8	98	21	20	18	39	1.93
32048717--32048781	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32051455--32051647	12	16.7	12	66	20	54	66	2	19	11	1.35
32051477--32051539	12	5.3	12	79	9	67	73	6	15	4	1.21
32051481--32051539	18	3.3	18	85	0	82	72	6	15	5	1.23
32051477--32051611	6	21.7	6	67	12	58	69	2	18	8	1.27
32051463--32051611	18	8.4	18	72	15	80	68	2	18	10	1.30
32051533--32051623	14	6.3	15	67	18	50	68	0	20	10	1.20
32051626--32051688	33	1.9	33	84	12	85	53	6	26	12	1.62
32053465--32053538	30	2.5	30	82	8	89	21	18	18	40	1.91
32053465--32053529	20	3.2	20	74	8	60	23	20	16	40	1.92
32055897--32056003	56	1.9	56	86	3	153	25	21	13	40	1.89
32056628--32056682	20	2.8	20	88	0	83	29	16	29	25	1.97
32059708--32059754	20	2.3	20	81	0	58	19	12	38	29	1.89
32062642--32062681	17	2.4	16	87	4	53	7	12	7	72	1.27
32062657--32062752	15	6.8	14	72	20	67	13	7	5	73	1.21
32062656--32062750	45	2.2	44	83	12	126	13	7	4	74	1.18
32062718--32062751	11	2.8	12	91	8	52	8	2	8	79	1.03
32062717--32062750	12	2.7	13	86	4	52	8	2	5	82	0.93
32064236--32064282	20	2.3	20	81	0	58	19	12	38	29	1.89
32066813--32066840	4	7.0	4	100	0	56	75	0	0	25	0.81
32074341--32074374	13	2.6	13	90	0	50	82	2	5	8	0.93
32074339--32074424	29	3.2	27	80	13	90	68	6	12	11	1.38
32082661--32082712	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32084966--32085035	20	3.5	20	86	3	97	25	25	15	32	1.95
32084988--32085041	10	5.6	9	79	14	54	25	29	16	27	1.97
32090504--32090550	20	2.3	20	81	0	58	23	12	34	29	1.92
32092185--32092290	48	2.2	48	85	9	137	14	24	1	59	1.45
32093335--32093402	24	2.9	24	86	4	86	8	8	4	77	1.10
32093371--32093408	11	3.5	11	82	10	51	18	2	5	73	1.14
32094473--32094526	20	2.7	20	82	0	63	24	20	18	37	1.94
32094473--32094546	30	2.5	30	86	8	98	21	20	18	39	1.93
32094473--32094537	20	3.2	20	71	16	53	23	21	16	38	1.93
32096081--32096120	20	2.0	20	85	4	55	20	5	7	67	1.34
32096153--32096178	12	2.2	12	100	0	52	76	7	0	15	0.99
32096171--32096245	27	2.7	26	76	10	78	73	5	13	8	1.23
32098958--32098984	10	2.7	10	100	0	54	85	7	0	7	0.75
32100043--32100150	6	17.7	6	71	10	76	73	3	16	6	1.19
32100111--32100148	13	2.8	13	82	17	51	73	0	18	7	1.06
32100154--32100185	12	2.7	12	95	0	55	59	0	21	18	1.38
32103327--32103368	22	2.0	22	90	4	68	78	2	11	7	1.04
32103338--32103476	6	22.8	6	67	13	61	71	2	17	9	1.23
32103342--32103392	17	2.9	17	91	2	75	72	3	15	7	1.23
32103406--32103494	27	3.1	27	76	17	92	69	0	17	12	1.18
32103434--32103475	19	2.2	19	86	0	57	73	0	14	11	1.09
32103491--32103553	33	1.9	33	84	12	85	53	6	26	12	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32105332--32105405	30	2.5	30	86	8	98	20	20	18	40	1.92
32113156--32113209	24	2.2	25	78	15	60	11	22	3	62	1.43
32117661--32117715	15	3.8	14	80	7	65	74	1	21	1	1.01
32125506--32125552	23	2.1	23	84	7	62	51	12	4	31	1.59
32127307--32127341	18	1.9	18	88	11	54	22	20	0	57	1.41
32136034--32136085	23	2.3	22	75	21	54	9	23	1	65	1.32
32140790--32140853	28	2.3	28	100	0	128	25	14	28	32	1.94
32140839--32140864	12	2.2	12	100	0	52	30	15	26	26	1.96
32140811--32140893	40	2.1	40	97	0	157	26	14	28	30	1.95
32140790--32140921	68	1.9	68	95	0	237	26	13	28	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230