genome.fa.s19.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  155  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45781272--45781300	12	2.3	13	94	5	51	20	6	6	65	1.40
45787922--45787975	24	2.2	24	93	0	90	7	25	16	50	1.71
45788865--45788918	25	2.1	26	86	10	76	61	1	3	33	1.25
45796319--45796356	20	2.0	20	84	5	51	47	7	2	42	1.46
45809223--45809271	24	2.0	24	88	0	71	24	20	24	30	1.98
45809247--45809333	40	2.2	40	89	4	131	22	20	28	27	1.99
45816518--45816559	14	3.0	14	85	0	57	19	2	0	78	0.86
45816714--45816753	20	2.0	20	95	0	71	5	32	50	12	1.62
45817503--45817604	3	34.0	3	81	0	123	30	4	2	61	1.31
45831178--45831235	24	2.4	24	97	0	107	34	12	24	29	1.91
45831530--45831839	51	6.4	46	77	10	269	29	18	24	28	1.98
45831518--45831800	51	5.7	51	81	8	325	28	17	25	27	1.98
45831518--45831758	97	2.5	97	90	0	374	28	18	25	28	1.98
45831530--45831853	148	2.2	148	84	3	390	29	18	23	28	1.98
45831530--45831861	46	6.9	46	73	11	146	28	18	23	28	1.98
45834169--45834247	25	3.3	25	61	10	65	32	5	29	32	1.79
45834153--45834710	47	12.1	47	91	3	920	32	8	29	28	1.87
45834166--45834710	185	3.0	186	93	2	890	33	8	29	28	1.87
45834518--45834645	40	3.0	40	84	14	184	33	9	28	28	1.88
45834471--45834645	87	2.0	87	98	0	341	33	9	29	28	1.88
45834829--45834907	37	2.1	37	86	4	106	25	17	30	26	1.97
45837196--45837221	9	2.9	9	100	0	52	11	0	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45842303--45842360	24	2.4	24	94	0	107	36	12	22	29	1.90
45842657--45843381	97	7.5	97	90	0	1108	28	18	24	29	1.98
45842646--45843381	195	3.8	194	92	0	1193	28	18	24	29	1.98
45842646--45843381	292	2.5	292	89	0	1125	28	18	24	29	1.98
45846044--45846099	21	2.8	20	72	20	53	48	1	1	48	1.22
45860137--45860204	31	2.2	31	97	0	127	26	13	38	22	1.91
45860168--45860412	47	5.2	47	92	0	373	33	8	30	26	1.87
45863564--45863600	7	5.1	7	90	6	56	43	2	10	43	1.53
45864348--45864403	28	2.0	28	100	0	112	50	14	10	25	1.75
45870063--45870112	8	5.3	9	78	21	50	48	0	8	44	1.32
45872194--45872248	6	9.2	6	100	0	110	16	0	0	83	0.64
45874262--45874643	191	2.0	191	97	0	728	26	19	28	25	1.98
45883641--45883675	16	2.2	16	94	0	61	42	5	11	40	1.65
45887300--45887326	12	2.2	12	100	0	54	51	7	0	40	1.30
45887809--45887986	27	6.6	27	83	3	205	26	15	28	29	1.96
45887810--45887965	82	1.9	81	88	3	233	26	15	28	29	1.96
45887806--45887986	82	2.2	81	83	2	229	27	15	27	29	1.96
45895322--45895382	25	2.4	25	91	0	95	27	21	21	29	1.98
45897702--45897760	30	2.0	30	89	0	91	33	18	5	42	1.72
45898251--45898404	35	4.3	36	82	4	152	40	31	12	15	1.84
45906138--45906262	62	2.0	63	96	1	234	44	12	20	22	1.85
45906448--45906498	6	8.5	6	91	0	66	0	50	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45906452--45906499	15	3.2	15	84	0	69	0	52	0	47	1.00
45907598--45907630	14	2.4	14	100	0	66	45	15	9	30	1.77
45907605--45907639	14	2.5	14	90	0	52	42	17	8	31	1.79
45912801--45912844	18	2.5	17	82	7	52	61	0	0	38	0.96
45915904--45915966	18	3.5	18	70	8	65	49	1	38	11	1.48
45917910--45917955	23	2.0	24	83	12	60	47	4	23	23	1.69
45920137--45920188	23	2.3	23	93	0	86	50	11	0	38	1.39
45930797--45931302	87	5.8	87	90	3	759	23	23	23	30	1.99
45931057--45931277	44	5.1	44	63	16	118	22	23	23	30	1.99
45945151--45945180	15	1.9	16	93	6	53	40	6	6	46	1.56
45945683--45945766	29	2.8	29	77	10	89	57	3	2	36	1.29
45945683--45945747	31	2.1	30	86	8	87	55	4	3	36	1.36
45945785--45945971	86	2.2	87	84	3	236	39	20	9	31	1.84
45951735--45952100	47	7.7	47	97	2	644	30	8	30	30	1.87
45952218--45952296	37	2.1	37	90	0	122	24	18	31	25	1.98
45961259--45961392	41	3.3	41	87	2	171	31	26	17	24	1.97
45961627--45961682	25	2.2	25	96	0	103	32	12	5	50	1.63
45962029--45962120	46	2.0	46	95	0	166	43	22	7	26	1.80
45964030--45964090	15	4.1	14	76	17	52	13	4	4	77	1.10
45964626--45964678	21	2.5	21	75	6	54	30	16	18	33	1.94
45967251--45967417	50	3.3	50	85	3	212	16	25	19	38	1.92
45967228--45967417	25	7.6	24	72	11	132	17	25	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45972532--45972628	48	2.0	48	100	0	194	36	18	14	30	1.91
45975131--45975168	20	1.9	20	88	0	58	44	7	7	39	1.63
45983569--45983600	13	2.5	13	94	0	55	28	18	18	34	1.95
45984835--45984900	29	2.2	30	86	2	89	34	10	12	42	1.77
45985037--45985122	31	2.9	30	78	3	93	34	15	13	36	1.87
45986682--45986742	7	8.6	7	72	16	54	39	1	0	59	1.08
45986838--45986874	17	2.1	18	90	5	58	32	43	0	24	1.55
45988133--45988186	28	1.9	28	85	7	74	61	3	7	27	1.40
45992876--45992900	9	2.8	9	100	0	50	36	36	20	8	1.82
45997525--45998110	100	5.9	100	88	0	823	23	20	23	32	1.98
45997568--45998105	50	10.8	50	74	1	387	23	20	24	31	1.98
45998134--45998242	44	2.5	44	81	3	112	31	22	17	29	1.96
45998178--45998285	45	2.4	44	84	1	135	28	25	20	25	1.99
45999602--45999671	7	10.0	7	82	17	92	14	15	0	70	1.18
45999602--45999663	13	4.5	14	80	9	74	14	16	0	69	1.19
45999600--45999671	20	3.4	21	92	5	110	13	16	0	69	1.19
46006274--46006328	15	3.5	15	73	22	58	23	10	7	58	1.57
46009952--46009996	19	2.4	19	85	7	56	26	24	8	40	1.84
46018110--46018213	44	2.4	44	81	3	120	30	17	23	28	1.97
46018290--46018630	44	7.7	43	74	11	179	31	17	22	27	1.97
46018464--46018630	44	3.8	44	82	0	199	30	19	23	26	1.98
46019852--46019910	30	1.9	31	86	10	86	16	8	6	67	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46020499--46020550	18	2.9	18	72	16	54	25	9	5	59	1.51
46020497--46020553	30	1.9	30	85	7	80	24	10	7	57	1.56
46021783--46021951	31	5.5	31	78	6	182	46	14	5	33	1.68
46021784--46022034	92	2.7	92	92	3	409	45	14	6	33	1.72
46022867--46022891	11	2.3	11	100	0	50	64	0	0	36	0.94
46028528--46028680	46	3.3	45	76	8	137	36	11	22	28	1.90
46030963--46030996	5	6.8	5	93	0	59	41	20	0	38	1.53
46038466--46038517	26	1.9	26	84	7	68	48	5	15	30	1.68
46043015--46043071	30	1.9	30	85	7	80	15	29	10	43	1.80
46045581--46045639	24	2.5	24	82	0	73	61	18	0	20	1.35
46051303--46051442	37	3.8	37	76	3	147	18	12	32	37	1.88
46051277--46051439	74	2.2	74	91	0	254	16	11	32	39	1.85
46052581--46052622	21	2.0	20	86	4	57	23	21	23	30	1.99
46054548--46054725	37	4.8	37	95	0	311	25	31	17	24	1.97
46054940--46055181	47	5.1	47	85	4	322	26	30	11	31	1.91
46054940--46055181	98	2.5	96	89	2	344	26	30	11	31	1.91
46065080--46065459	47	8.1	47	94	0	643	32	8	30	28	1.88
46065578--46065656	37	2.1	37	88	4	115	25	18	30	25	1.98
46068837--46069443	185	3.3	183	88	4	891	24	25	7	42	1.81
46069757--46069785	14	2.0	15	93	6	51	55	0	44	0	0.99
46075703--46075850	50	2.9	50	80	11	156	35	13	20	30	1.91
46075977--46076313	60	5.6	59	81	2	325	32	13	24	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46075977--46076313	120	2.8	120	83	0	377	32	13	24	28	1.94
46078050--46078452	148	2.7	148	80	2	384	30	14	28	26	1.95
46081844--46081877	17	2.0	17	94	0	59	41	20	2	35	1.68
46082675--46082723	3	16.3	3	100	0	98	32	0	0	67	0.91
46094794--46094830	17	2.3	17	86	9	51	67	8	0	24	1.17
46096649--46096680	14	2.1	16	88	11	50	50	12	6	31	1.65
46105413--46106345	143	6.5	142	93	2	1485	33	8	29	29	1.87
46105413--46106345	192	4.9	192	95	1	1621	33	8	29	29	1.87
46105413--46106345	47	19.6	47	92	1	1479	33	8	29	29	1.87
46108481--46108555	38	2.0	38	86	5	107	30	18	26	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230