genome.fa.s19.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  16  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4607063--4607148	25	3.4	25	77	4	84	30	24	13	31	1.94
4611648--4611692	21	2.1	21	100	0	90	20	13	4	62	1.48
4618994--4619136	31	4.4	31	73	19	103	35	1	0	62	1.09
4619012--4619100	38	2.3	35	82	17	99	40	2	0	57	1.11
4619049--4619087	11	3.7	10	83	12	51	46	2	0	51	1.14
4623364--4623407	22	2.0	21	82	4	52	15	6	2	75	1.12
4626264--4626603	177	1.9	177	97	0	644	31	13	19	35	1.90
4626910--4626948	17	2.3	17	95	0	69	28	0	0	71	0.86
4629189--4629292	49	2.1	49	94	0	181	31	7	10	50	1.65
4630638--4630680	21	2.0	21	86	8	61	34	0	6	58	1.25
4630697--4630742	18	2.6	18	86	3	58	43	0	2	54	1.12
4630645--4630818	59	2.9	59	69	11	167	41	1	5	51	1.34
4630728--4630947	102	2.2	102	96	0	413	41	1	5	51	1.34
4630663--4630846	59	3.1	56	71	19	167	42	2	4	50	1.36
4630645--4630864	119	1.9	119	89	4	349	42	1	4	51	1.33
4631123--4631220	49	2.0	49	84	9	128	34	27	4	33	1.76
4631202--4631253	16	3.2	16	86	0	77	25	30	3	40	1.73
4632864--4632893	10	2.8	11	90	10	53	53	26	0	20	1.46
4632868--4632900	10	3.3	10	91	8	50	57	24	0	18	1.40
4633740--4633879	40	3.5	40	77	6	151	30	22	17	30	1.97
4634015--4634061	24	2.0	23	84	12	60	48	14	0	36	1.44
4637775--4637834	15	4.0	15	71	12	52	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4637767--4637819	10	5.7	10	86	10	60	47	0	0	52	1.00
4637776--4637820	10	4.5	10	88	0	63	46	0	0	53	1.00
4647131--4647160	9	3.3	9	90	0	51	40	0	23	36	1.55
4647131--4647169	18	2.2	18	90	0	60	35	0	28	35	1.58
4648913--4649104	67	2.9	67	89	0	285	37	15	20	26	1.92
4652134--4652281	42	3.4	43	75	11	144	25	16	26	31	1.97
4652134--4652292	43	3.7	43	75	12	157	25	16	26	30	1.97
4654572--4654640	31	2.2	31	80	12	79	43	0	11	44	1.40
4659855--4659895	20	2.0	20	90	0	64	31	2	19	46	1.63
4663645--4663798	84	1.8	83	90	1	245	37	18	7	36	1.80
4666075--4666151	9	8.4	9	84	8	84	42	25	9	22	1.82
4666224--4666320	39	2.5	39	80	11	117	21	2	27	48	1.61
4667914--4667972	26	2.3	26	82	5	66	59	1	0	38	1.08
4669982--4670095	42	2.7	43	90	1	176	22	21	21	33	1.97
4670418--4670488	21	3.4	21	80	0	88	4	46	18	30	1.68
4675998--4676384	9	44.8	9	72	10	290	31	2	22	43	1.65
4675991--4676388	129	3.1	129	98	0	769	31	2	22	44	1.64
4676256--4676371	61	1.9	61	82	7	146	31	1	20	45	1.61
4676328--4676393	34	1.9	34	90	0	105	36	4	19	39	1.72
4676398--4676531	37	3.6	37	79	8	146	36	5	9	47	1.61
4676470--4676531	20	3.2	20	86	4	90	38	4	8	48	1.54
4676919--4677223	85	3.6	86	83	3	370	30	27	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4676919--4677223	42	7.2	42	78	7	296	30	27	16	25	1.97
4676919--4677230	128	2.5	126	78	8	312	30	27	16	25	1.97
4677316--4677349	16	2.1	16	88	0	50	55	8	0	35	1.31
4682708--4682763	22	2.6	21	80	5	58	42	35	0	21	1.53
4683184--4683217	18	1.9	17	88	5	50	58	8	2	29	1.43
4683236--4683560	41	7.8	41	84	6	296	32	28	22	16	1.96
4683257--4683560	82	3.6	82	88	4	398	31	28	23	17	1.96
4683299--4683560	123	2.1	123	91	4	422	30	29	23	16	1.96
4683680--4683774	40	2.3	40	78	1	100	29	18	16	34	1.94
4686058--4686384	146	2.2	145	81	5	354	36	22	15	25	1.93
4686611--4686647	19	1.9	19	94	0	65	29	29	13	27	1.94
4691572--4691606	18	2.0	17	88	5	52	45	0	0	54	0.99
4691839--4691877	16	2.4	16	86	0	51	28	33	2	35	1.71
4691852--4691908	16	3.6	16	95	0	87	33	36	0	29	1.58
4692446--4692789	114	3.0	114	77	3	309	27	27	21	23	1.99
4695242--4695290	15	3.3	15	83	8	55	46	6	2	44	1.39
4697572--4697628	28	2.0	28	96	0	105	49	24	10	15	1.76
4698460--4698484	11	2.3	11	100	0	50	84	0	0	16	0.63
4698523--4698558	18	2.0	18	94	0	63	58	0	2	38	1.13
4698527--4698572	23	2.0	24	87	12	69	54	0	4	41	1.20
4698637--4698699	21	3.0	21	79	11	65	61	6	4	26	1.40
4699709--4699752	18	2.5	18	85	3	54	6	18	34	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4700218--4700717	89	5.7	88	85	4	645	29	24	14	32	1.94
4700218--4700716	262	1.9	265	89	2	790	29	24	14	32	1.94
4700247--4700755	133	3.9	133	81	5	629	29	23	14	32	1.94
4700220--4700733	44	11.7	44	80	6	587	29	24	14	31	1.94
4700775--4701018	132	1.8	132	86	3	357	29	22	18	29	1.97
4701038--4702000	100	9.6	100	92	1	1572	25	24	21	29	1.99
4703247--4703288	21	2.0	21	90	9	68	14	9	0	76	1.02
4704206--4704230	7	3.6	7	100	0	50	88	0	0	12	0.53
4705883--4706162	140	2.0	140	95	0	506	43	8	10	37	1.70
4712433--4712468	14	2.5	15	90	4	56	44	44	11	0	1.39
4713441--4713504	3	21.0	3	90	3	92	34	4	0	60	1.17
4728367--4728406	20	2.0	21	90	5	64	55	2	25	17	1.55
4737344--4738070	100	7.3	100	85	3	835	32	22	21	23	1.98
4737505--4738078	50	11.5	50	66	9	233	32	23	20	23	1.98
4742310--4742412	51	2.0	53	84	7	140	60	3	0	34	1.22
4742930--4743115	20	9.3	19	70	14	83	34	2	3	59	1.27
4742930--4743001	9	7.6	9	80	10	72	30	2	2	63	1.22
4742930--4743016	29	3.0	28	75	14	88	31	3	3	62	1.29
4743071--4743186	9	12.6	9	71	19	53	28	1	5	64	1.24
4745787--4745875	46	1.9	46	82	8	110	24	17	24	32	1.97
4747683--4747805	39	3.1	40	82	5	151	23	21	18	35	1.95
4753976--4754087	59	1.9	57	81	3	134	26	14	14	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4754051--4754128	39	2.0	39	100	0	156	30	20	10	38	1.86
4757497--4757549	22	2.2	24	78	15	58	35	3	7	52	1.48
4758979--4759084	51	2.1	51	100	0	212	27	9	19	43	1.82
4761771--4761797	3	9.0	3	100	0	54	66	0	0	33	0.92
4768066--4768119	28	1.9	28	81	7	65	35	3	0	61	1.14
4768038--4768174	40	3.5	40	93	3	233	36	2	0	61	1.08
4769206--4769323	45	2.6	45	92	4	186	35	13	20	30	1.91
4769260--4769387	62	2.0	64	89	5	199	34	12	24	28	1.92
4769322--4769428	45	2.4	46	87	7	150	34	14	22	28	1.94
4776523--4776576	3	18.0	3	100	0	108	33	0	0	66	0.92
4776750--4777046	42	7.0	42	83	5	332	32	23	19	24	1.97
4776751--4777039	125	2.3	126	84	3	366	32	23	19	24	1.97
4776760--4777085	84	3.9	83	77	12	267	31	23	19	25	1.98
4779322--4779418	9	10.3	9	68	20	56	36	1	16	46	1.54
4779491--4779582	30	3.1	30	85	6	141	43	1	11	43	1.48
4779612--4779694	40	2.1	40	90	4	132	30	7	19	43	1.78
4781478--4782190	365	2.0	365	92	1	1187	35	20	14	29	1.92
4782237--4782317	24	3.2	23	80	19	99	45	8	0	45	1.34
4782261--4782304	13	3.2	13	77	22	54	52	4	0	43	1.22
4782237--4782320	28	3.2	26	79	12	91	44	8	0	47	1.33
4782739--4782772	14	2.4	14	85	0	50	29	50	2	17	1.61
4782857--4782910	14	3.9	14	80	0	54	35	40	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4783557--4783997	114	3.9	114	87	2	584	28	23	23	25	2.00
4783816--4784180	186	2.0	187	88	4	551	27	23	23	26	2.00
4783689--4784277	300	2.0	300	85	5	814	27	23	23	25	2.00
4783989--4784276	114	2.5	114	86	5	404	28	24	21	25	1.99
4784627--4784656	12	2.5	12	100	0	60	16	10	10	63	1.51
4787592--4787682	38	2.5	35	83	10	119	52	6	2	38	1.40
4787604--4787682	38	2.1	38	97	0	149	53	3	2	40	1.33
4790547--4790601	22	2.4	23	90	3	85	14	12	52	20	1.73
4790646--4790680	17	2.1	17	94	0	61	42	2	45	8	1.49
4792409--4792500	22	4.2	22	88	0	112	30	27	0	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230