genome.fa.s19.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  116  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33661589--33661655	27	2.5	27	90	0	98	35	10	14	38	1.81
33661608--33661687	27	2.9	27	81	5	81	32	11	16	40	1.84
33683142--33684422	645	2.0	647	86	4	1789	35	19	11	34	1.88
33685666--33685770	39	2.6	41	78	4	115	33	15	30	20	1.94
33688343--33688411	35	2.0	35	88	0	102	31	17	21	28	1.96
33688930--33688993	27	2.3	28	86	7	87	31	18	17	32	1.94
33688898--33688993	28	3.5	27	79	11	97	31	18	19	30	1.96
33692536--33692610	27	2.8	28	70	13	75	28	20	16	36	1.93
33699650--33699688	12	3.2	12	85	0	51	20	23	5	51	1.67
33699950--33700124	50	3.5	50	77	7	176	23	28	20	28	1.99
33703586--33703620	9	3.9	9	88	0	52	51	2	0	45	1.16
33708561--33708615	28	2.0	28	85	0	74	23	23	23	29	1.99
33715628--33715824	27	7.0	27	78	11	189	44	19	18	17	1.87
33715622--33715828	54	3.7	54	79	11	216	43	19	19	17	1.88
33715648--33715778	63	2.1	63	92	2	219	47	17	18	16	1.83
33715629--33715805	90	2.0	90	87	2	257	45	18	18	18	1.86
33719625--33719702	29	2.7	28	82	11	95	24	16	30	28	1.97
33719657--33719982	174	1.9	174	89	1	510	29	14	24	30	1.95
33721749--33722752	411	2.4	409	81	5	1134	30	13	23	32	1.93
33724661--33724732	21	3.4	21	75	7	83	13	29	18	38	1.89
33724622--33724747	42	3.0	42	86	0	162	16	26	17	38	1.91
33724622--33724766	42	3.5	42	84	0	155	16	25	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33728439--33728501	21	3.0	21	65	9	56	15	28	17	38	1.91
33728376--33728522	42	3.5	42	80	0	150	17	25	17	39	1.91
33730157--33730230	24	3.2	24	66	14	66	51	4	5	39	1.44
33730136--33730230	44	2.1	47	90	5	151	49	3	8	38	1.49
33739374--33739553	98	1.9	96	85	4	254	46	3	2	46	1.35
33739608--33739646	13	2.9	13	88	3	51	61	2	0	35	1.10
33739573--33739663	36	3.0	30	70	22	73	60	6	2	30	1.34
33739833--33739873	14	2.8	15	81	7	57	58	0	7	34	1.26
33739910--33739939	13	2.2	14	94	5	53	20	0	6	73	1.05
33745226--33745342	39	3.0	39	91	0	180	46	23	2	28	1.65
33750420--33750453	10	3.4	10	95	0	59	26	23	2	47	1.66
33753504--33753535	16	2.0	16	93	0	55	25	15	0	59	1.36
33753650--33753757	46	2.4	43	80	13	121	35	23	17	24	1.95
33753759--33753951	51	3.8	50	78	10	205	31	28	16	23	1.96
33753757--33753945	101	1.9	102	84	5	249	31	27	16	24	1.97
33784458--33784515	28	2.1	28	93	0	98	12	41	5	41	1.64
33790437--33790504	16	4.2	16	96	0	127	26	0	35	38	1.57
33790740--33790774	18	2.0	17	88	5	52	54	0	0	45	0.99
33790627--33790911	157	1.8	157	95	0	516	43	3	5	48	1.41
33790877--33790911	15	2.2	16	90	5	54	51	0	0	48	1.00
33794127--33794181	28	2.0	28	92	0	92	63	5	29	1	1.27
33798933--33798978	22	2.1	22	100	0	92	4	13	23	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33804224--33804574	176	2.0	176	90	0	558	33	16	23	26	1.95
33809105--33809288	92	2.0	92	98	0	359	41	6	3	48	1.45
33811848--33812194	123	2.8	123	92	0	568	27	16	21	34	1.95
33811845--33812190	125	2.8	125	92	0	570	27	16	21	34	1.95
33816802--33816854	23	2.4	22	78	6	61	45	3	13	37	1.61
33816802--33816845	23	2.0	23	86	4	63	45	4	13	36	1.64
33818252--33818364	27	4.2	27	79	4	111	24	23	22	30	1.99
33823352--33823411	30	2.0	30	90	9	95	60	0	1	38	1.07
33823352--33823494	41	3.5	39	82	11	171	60	0	2	36	1.17
33823352--33823493	40	3.5	40	82	10	171	60	0	2	35	1.16
33823353--33823444	10	8.9	10	71	19	57	57	1	2	39	1.18
33823643--33823677	18	1.9	18	88	0	52	0	45	51	2	1.16
33824998--33825043	11	4.0	11	79	20	58	63	0	0	36	0.95
33828431--33828475	16	2.8	16	93	3	72	35	11	8	44	1.71
33837839--33837892	27	2.0	27	96	0	99	24	24	7	44	1.79
33841429--33841471	20	2.2	20	91	0	68	34	25	25	13	1.93
33843142--33843252	47	2.4	48	77	8	113	24	9	19	45	1.80
33846496--33846562	14	4.3	15	78	10	64	47	7	17	26	1.74
33854529--33854595	25	2.7	25	80	17	93	29	19	20	29	1.97
33861325--33861378	23	2.4	22	78	12	56	27	1	27	42	1.66
33862968--33863160	50	3.7	50	82	4	215	26	22	27	22	1.99
33862975--33863160	100	1.8	103	82	6	243	27	22	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33863409--33863447	12	3.2	12	85	0	51	51	5	23	20	1.67
33911525--33911582	19	2.8	19	79	10	53	29	0	1	68	0.99
33911817--33911877	22	2.5	24	82	10	63	44	6	3	45	1.46
33911833--33911887	26	2.2	24	84	12	67	41	7	5	45	1.55
33912261--33912297	19	1.9	19	88	0	56	45	0	0	54	1.00
33914151--33914214	30	2.1	31	82	2	76	53	10	3	32	1.52
33919536--33919577	19	2.3	19	95	4	77	26	19	35	19	1.95
33924254--33924289	17	2.1	17	94	0	63	25	33	5	36	1.79
33925111--33925227	35	3.3	35	75	4	119	26	22	23	27	2.00
33927951--33928052	50	2.1	49	88	1	150	30	8	12	48	1.72
33932017--33932052	18	2.0	18	94	0	63	22	30	0	47	1.52
33932022--33932065	18	2.4	18	85	7	54	20	29	2	47	1.62
33945015--33945209	49	3.8	49	81	7	178	24	28	21	26	1.99
33945013--33945156	50	2.9	49	83	3	173	22	29	21	26	1.99
33951456--33952623	600	1.9	600	92	0	1969	38	13	20	27	1.90
33953224--33953254	2	15.5	2	100	0	62	0	0	51	48	1.00
33954744--33954768	12	2.1	12	100	0	50	24	36	24	16	1.94
33954927--33955019	9	10.4	9	83	2	107	35	23	8	32	1.85
33954927--33955019	27	3.5	27	88	1	125	35	23	8	32	1.85
33955019--33955091	37	2.0	37	89	5	112	46	15	4	34	1.64
33955261--33955285	7	3.6	7	100	0	50	52	16	16	16	1.76
33955341--33955399	7	8.3	7	81	3	73	52	13	16	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33955402--33955428	13	2.1	13	100	0	54	7	14	33	44	1.73
33955617--33955668	18	2.7	19	82	5	61	23	17	19	40	1.91
33956399--33956959	279	2.0	279	86	2	777	31	18	14	35	1.91
33958614--33958647	8	4.2	8	84	0	50	38	0	11	50	1.39
33958918--33959058	75	1.9	75	80	2	167	32	5	19	42	1.74
33959140--33959219	41	2.0	41	84	0	106	26	17	22	33	1.96
33959407--33959480	33	2.2	34	87	2	105	29	12	13	44	1.80
33962021--33962045	10	2.5	10	100	0	50	40	0	12	48	1.40
33962156--33962262	6	17.8	6	100	0	214	33	0	15	50	1.45
33962758--33962836	41	2.0	41	84	2	106	24	17	22	35	1.95
33962770--33962861	41	2.2	41	82	0	103	27	17	25	30	1.97
33962988--33963141	69	2.2	71	82	3	186	30	12	14	42	1.83
33966291--33966336	16	2.9	16	78	15	51	50	6	0	43	1.28
33967809--33967851	21	2.0	21	95	0	77	27	25	13	32	1.94
33968914--33969042	56	2.5	50	80	15	161	44	4	6	43	1.51
33968938--33969051	56	2.1	55	96	1	210	43	4	5	46	1.46
33969697--33969734	14	2.8	14	84	4	51	34	0	0	65	0.93
33970600--33970635	6	5.8	6	87	6	54	63	0	0	36	0.94
33970997--33971032	6	5.8	6	87	6	54	63	0	0	36	0.94
33970440--33971233	397	2.0	397	97	0	1498	41	8	6	43	1.60
33971671--33971748	31	2.5	30	83	4	93	44	8	0	46	1.35
33971911--33971944	5	7.0	5	90	3	52	41	14	0	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33983445--33983475	16	1.9	16	93	0	53	45	9	9	35	1.70
33984335--33984581	30	8.3	30	70	13	136	40	12	23	23	1.89
33984335--33984527	61	3.2	60	76	11	162	41	12	24	21	1.87
33984335--33984555	89	2.4	90	84	8	272	41	12	23	22	1.88
33984452--33984622	59	2.9	58	73	9	166	39	12	23	23	1.89
33984417--33984608	89	2.2	89	82	6	221	41	13	20	24	1.88
33984451--33984626	29	6.0	28	76	10	113	39	13	22	23	1.90
33990542--33990578	16	2.3	16	90	9	58	48	2	18	29	1.62
33991182--33991283	40	2.5	40	82	6	118	33	20	12	33	1.90
33991308--33991394	36	2.4	36	82	3	104	36	16	14	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230