genome.fa.s19.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  107  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30790329--30790380	22	2.4	21	78	18	54	17	3	5	73	1.19
30808749--30808813	20	3.2	20	80	4	69	61	4	1	32	1.26
30814801--30814855	24	2.2	26	84	12	71	34	0	1	63	1.05
30814800--30814857	26	2.2	27	80	20	70	36	0	1	62	1.06
30815415--30815458	9	4.7	9	83	10	61	65	6	2	25	1.28
30815407--30815458	20	2.7	19	85	8	70	65	5	3	25	1.32
30815415--30815478	29	2.2	29	88	5	94	65	4	3	26	1.27
30815415--30815499	29	2.9	27	80	13	73	65	3	4	25	1.28
30815415--30815843	10	44.7	9	68	20	119	59	3	2	34	1.28
30815564--30815618	29	1.9	28	88	3	83	61	3	0	34	1.13
30815436--30815852	19	21.6	20	65	16	91	59	3	1	35	1.26
30815721--30815773	22	2.5	21	82	14	56	58	0	1	39	1.09
30816544--30816635	35	2.6	34	70	14	80	30	0	4	65	1.12
30823684--30823792	33	3.3	33	85	5	150	40	0	17	41	1.56
30823876--30824140	124	2.1	125	85	4	358	36	15	16	30	1.91
30827611--30827653	18	2.4	18	88	0	59	39	9	30	20	1.84
30829065--30829089	9	2.8	9	100	0	50	56	24	12	8	1.62
30830039--30830254	51	4.3	51	80	4	222	24	16	27	31	1.97
30830038--30830259	101	2.2	101	81	2	257	24	16	27	30	1.97
30836039--30836093	10	5.6	10	79	14	53	34	1	3	60	1.25
30838189--30838280	21	4.5	21	76	8	73	41	20	23	14	1.89
30838201--30838285	21	4.0	21	76	0	80	43	18	23	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30845935--30846021	42	2.1	42	88	0	129	45	18	20	14	1.84
30845904--30846017	21	5.4	21	76	4	95	43	18	22	14	1.87
30848748--30848869	57	2.1	59	87	3	176	26	21	7	45	1.78
30851946--30852021	33	2.3	34	86	2	109	18	21	31	28	1.97
30853307--30853394	25	3.5	25	78	9	81	37	13	17	31	1.88
30860381--30860528	73	2.0	73	93	0	251	20	18	16	44	1.87
30869469--30869584	62	1.9	59	89	5	178	41	4	3	50	1.39
30870394--30870543	41	3.7	41	89	3	230	23	29	20	26	1.99
30870392--30870568	82	2.2	83	83	9	229	24	28	19	27	1.99
30873429--30873491	5	12.8	5	86	1	83	0	20	1	77	0.85
30875248--30875324	26	2.9	26	88	1	109	35	9	28	27	1.87
30889524--30889585	13	4.8	13	83	0	88	37	25	8	29	1.85
30894571--30894659	38	2.2	40	84	9	112	51	6	4	37	1.49
30894758--30894799	6	7.0	6	100	0	84	66	0	0	33	0.92
30898217--30898241	11	2.3	11	100	0	50	92	0	8	0	0.40
30908492--30908567	37	2.1	37	100	0	152	27	18	26	27	1.98
30911355--30911543	51	3.7	50	80	8	204	30	28	16	24	1.97
30911357--30911541	101	1.8	101	87	5	275	30	27	17	24	1.97
30915362--30915402	21	2.0	21	85	0	55	53	0	36	9	1.34
30918911--30918963	5	10.6	5	100	0	106	81	0	0	18	0.70
30919526--30919566	18	2.2	19	86	4	57	60	0	2	36	1.10
30920786--30920830	20	2.3	19	85	11	63	48	0	17	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30921786--30921913	54	2.4	54	81	2	150	25	23	30	20	1.98
30924576--30924821	50	4.8	50	81	6	230	27	20	28	23	1.99
30933062--30933199	24	5.8	24	81	3	161	26	20	22	31	1.98
30933061--30933199	48	2.9	48	84	0	179	26	20	22	30	1.98
30933064--30933197	72	1.9	72	87	3	198	26	19	22	31	1.98
30941439--30941481	15	2.8	15	86	10	52	16	0	9	74	1.06
30941450--30941487	20	1.9	20	88	0	58	10	0	13	76	1.02
30952230--30952429	61	3.2	58	77	18	204	51	5	4	39	1.44
30952321--30952372	20	2.8	18	73	21	54	50	3	3	42	1.39
30952288--30952432	68	2.1	71	80	7	163	51	4	4	38	1.44
30955130--30955171	3	14.0	3	100	0	84	33	0	0	66	0.92
30955435--30955496	30	2.1	30	82	8	74	53	1	1	43	1.20
30959500--30959558	19	3.1	19	85	11	68	55	10	0	33	1.33
30959500--30959553	20	2.7	20	86	13	76	57	11	0	31	1.34
30959532--30959580	25	1.9	26	87	4	73	48	4	0	46	1.20
30959500--30959597	21	4.6	20	75	16	63	53	7	0	39	1.29
30960539--30960580	19	2.2	19	86	0	57	26	11	2	59	1.45
30961171--30961244	38	1.9	38	81	5	87	41	4	5	48	1.45
30961190--30961237	25	1.9	25	83	8	62	43	4	4	47	1.41
30961818--30961878	23	2.7	23	90	5	72	29	11	13	45	1.78
30961831--30961878	23	2.1	23	100	0	96	25	8	16	50	1.73
30963241--30963305	28	2.3	28	84	7	78	27	4	24	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30964187--30964235	18	2.7	19	81	9	66	40	14	0	44	1.45
30968246--30968287	22	1.9	22	85	9	59	45	11	4	38	1.62
30975866--30976199	59	5.7	59	80	3	334	27	24	13	34	1.93
30976015--30976167	28	5.2	29	67	10	87	26	28	13	31	1.94
30976103--30976225	28	4.3	28	77	11	133	27	26	14	30	1.95
30981313--30981397	40	2.1	41	82	6	102	32	10	8	48	1.67
30981322--30981397	20	3.8	20	75	3	64	34	10	7	47	1.67
30988134--30988193	20	3.0	20	80	0	66	33	10	11	45	1.74
30992379--30992422	20	2.2	20	100	0	88	38	9	25	27	1.86
30997202--30997234	15	2.2	15	94	0	57	69	0	15	15	1.19
31002191--31002366	28	6.3	28	89	2	239	25	13	28	32	1.93
31004087--31004206	52	2.3	52	82	2	143	50	15	15	20	1.79
31011047--31011108	31	2.0	31	93	3	108	58	20	6	14	1.59
31015180--31015218	21	1.9	19	85	10	51	35	10	23	30	1.88
31016716--31016793	30	2.6	30	87	0	102	47	6	16	29	1.71
31016737--31016810	30	2.4	30	86	2	94	45	6	18	28	1.75
31025705--31025739	11	3.1	11	88	8	52	68	8	2	20	1.29
31031868--31032019	26	5.7	26	76	7	126	49	22	14	13	1.78
31031857--31032009	53	2.9	53	81	4	166	49	22	13	13	1.77
31031857--31032009	27	5.8	26	78	2	144	49	22	13	13	1.77
31032335--31032399	28	2.3	28	94	0	112	23	29	21	26	1.99
31033527--31033611	27	3.1	27	86	3	100	44	20	14	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033547--31033625	27	2.9	27	83	3	88	40	21	13	24	1.90
31033949--31034036	28	3.2	28	93	1	142	22	23	26	27	2.00
31036170--31036226	21	2.7	20	71	10	51	52	1	0	45	1.11
31036186--31036247	30	2.1	28	85	5	79	51	3	1	43	1.27
31038795--31038840	20	2.3	20	88	3	67	76	6	15	2	1.09
31039092--31039138	24	2.0	24	95	0	85	48	12	25	12	1.77
31042825--31042862	20	1.9	20	84	10	51	44	23	21	10	1.83
31043061--31043109	23	2.0	23	88	7	71	51	20	12	16	1.76
31045480--31045529	24	2.1	23	85	3	64	22	14	8	56	1.64
31045514--31045549	18	1.9	19	88	5	56	16	2	5	75	1.12
31046294--31046362	29	2.3	30	85	5	86	18	13	14	53	1.72
31049577--31049601	2	12.5	2	100	0	50	48	0	0	52	1.00
31062196--31062280	43	2.0	44	92	2	145	29	12	24	32	1.93
31066964--31066988	12	2.1	12	100	0	50	32	0	24	44	1.54
31067050--31067122	32	2.3	30	84	9	92	56	2	19	21	1.55
31077520--31077577	21	2.5	22	86	10	73	34	3	1	60	1.24
31078167--31078200	16	2.1	17	88	5	52	35	14	2	47	1.60
31090494--31090833	45	7.7	47	66	18	169	32	25	24	17	1.97
31090482--31090852	89	4.1	93	87	11	503	33	24	23	18	1.97
31090635--31090774	39	3.3	39	69	19	104	36	26	21	15	1.93
31090511--31090845	173	1.9	176	88	10	517	32	25	23	17	1.97
31105269--31105307	18	2.2	17	86	4	51	43	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31105277--31105313	17	2.1	18	90	5	58	45	5	0	48	1.25
31108715--31108788	33	2.2	33	85	0	112	13	12	33	40	1.82
31117993--31118111	63	1.9	63	82	6	152	29	27	19	23	1.98
31127110--31127143	15	2.3	15	100	0	68	44	23	5	26	1.76
31129669--31129700	14	2.3	14	100	0	64	43	12	0	43	1.42
31131428--31131456	14	2.1	14	100	0	58	58	0	0	41	0.98
31139391--31139446	24	2.4	24	78	3	60	46	16	12	25	1.81
31151341--31151395	29	2.0	27	82	13	67	60	10	14	14	1.60
31161232--31161297	32	2.1	32	100	0	132	50	12	9	28	1.70
31164167--31164288	23	5.2	23	77	5	93	18	17	19	45	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230