genome.fa.s19.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  221  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65507229--65507266	19	2.1	18	85	9	51	28	0	5	65	1.14
65509480--65509517	17	2.4	17	91	8	62	63	0	5	31	1.17
65515292--65515336	23	1.9	24	81	4	56	35	35	6	22	1.80
65522486--65522562	41	1.9	39	82	10	93	45	2	0	51	1.14
65526229--65526278	21	2.3	22	79	3	57	52	4	2	42	1.31
65526270--65526298	14	2.1	14	93	6	51	34	0	3	62	1.12
65534404--65534440	15	2.4	15	90	4	56	45	8	29	16	1.76
65540059--65540107	23	2.2	23	96	3	91	57	14	12	16	1.66
65540275--65540356	41	2.0	41	100	0	164	53	19	21	4	1.63
65544626--65544696	36	2.0	36	97	0	133	39	21	11	28	1.87
65553744--65553802	21	2.8	21	81	2	82	1	30	13	54	1.49
65556664--65556694	16	1.9	16	93	0	53	22	0	12	64	1.27
65558816--65558853	20	1.9	20	84	10	51	18	7	36	36	1.80
65559135--65559192	29	2.0	30	83	10	75	37	13	6	41	1.72
65563868--65564006	69	2.0	69	98	0	269	37	12	5	44	1.65
65578834--65578877	17	2.3	20	85	14	58	9	18	2	70	1.24
65579129--65579177	24	2.0	24	84	0	62	67	8	4	20	1.34
65580380--65580407	7	4.0	7	100	0	56	0	71	28	0	0.86
65585666--65585704	18	2.1	17	86	13	51	71	0	2	25	0.98
65590354--65590398	22	2.1	21	87	4	63	44	0	4	51	1.21
65598750--65598847	23	4.3	23	90	2	162	31	26	21	20	1.98
65598757--65598845	45	2.0	45	95	0	160	31	26	22	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65598934--65598962	8	3.6	8	100	0	58	34	27	13	24	1.93
65599004--65599151	75	2.0	75	100	0	296	33	21	8	37	1.83
65602664--65602710	17	2.8	17	79	20	62	55	6	2	36	1.37
65602968--65603027	30	2.0	31	86	3	86	40	0	40	20	1.52
65603334--65603364	9	3.4	9	90	0	53	38	22	12	25	1.90
65608583--65608631	24	2.0	24	88	7	73	26	0	4	69	1.06
65613789--65613879	42	2.2	42	94	4	157	43	5	0	50	1.25
65613814--65613879	21	3.1	22	66	22	59	43	7	0	48	1.31
65615952--65616090	52	2.7	52	94	2	235	24	16	22	36	1.94
65622278--65622412	51	2.7	51	90	1	200	25	18	28	27	1.98
65625965--65625996	11	2.6	13	90	9	50	37	12	12	37	1.81
65627057--65627106	26	1.9	26	100	0	100	16	24	32	28	1.96
65627085--65627286	33	5.6	33	74	21	172	21	17	27	33	1.96
65627118--65627252	42	3.4	42	73	17	153	22	16	28	32	1.96
65627081--65627359	75	3.7	75	92	2	445	22	17	27	31	1.97
65627193--65627330	42	3.5	42	72	19	152	23	16	26	34	1.95
65631185--65631215	15	2.1	15	93	0	53	32	12	9	45	1.75
65633221--65633285	34	1.9	33	81	9	78	36	1	1	60	1.16
65633292--65633326	18	1.9	18	94	0	61	20	0	11	68	1.20
65633294--65633333	18	2.2	18	86	0	53	27	0	7	65	1.20
65634769--65634810	18	2.3	18	100	0	84	16	19	38	26	1.92
65639563--65639587	13	1.9	13	100	0	50	80	0	16	4	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65640855--65641540	44	15.8	44	67	16	206	27	20	23	28	1.99
65640838--65641448	173	3.5	173	88	3	793	27	20	24	28	1.99
65640988--65641667	217	3.1	214	83	4	686	27	19	23	28	1.98
65646886--65646930	22	2.0	22	82	0	54	17	11	2	68	1.29
65655440--65655600	60	2.7	60	76	3	146	43	15	11	29	1.82
65655771--65655839	22	3.1	21	76	17	61	46	0	2	50	1.16
65658887--65658931	21	2.1	21	95	0	81	48	4	8	37	1.55
65659905--65659937	13	2.4	14	90	5	50	27	9	24	39	1.85
65661651--65661694	19	2.5	17	85	7	52	27	4	11	56	1.53
65674909--65675046	69	2.0	69	98	0	267	40	9	10	39	1.71
65682982--65683078	48	2.0	48	97	0	185	50	14	11	23	1.75
65683364--65683391	6	4.7	6	100	0	56	53	0	32	14	1.41
65694837--65694878	19	2.2	19	86	0	57	35	2	0	61	1.09
65696564--65696665	41	2.5	40	88	6	150	28	25	19	26	1.99
65699750--65699793	19	2.2	21	80	15	58	11	27	4	56	1.53
65704581--65704624	19	2.2	21	80	15	58	11	20	4	63	1.44
65704587--65704623	20	1.9	20	88	5	58	13	16	5	64	1.45
65704707--65704747	16	2.3	19	84	16	61	78	0	12	9	0.98
65705958--65706001	21	2.0	21	82	4	52	29	4	11	54	1.56
65706369--65706438	34	2.1	34	86	5	97	38	11	17	32	1.85
65715933--65715960	12	2.3	12	100	0	56	21	0	0	78	0.75
65715953--65716009	29	2.0	28	83	10	71	45	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65716533--65716575	17	2.6	16	79	13	52	27	0	2	69	1.00
65717656--65717688	16	2.0	16	94	5	57	60	0	0	39	0.97
65718885--65718928	22	1.9	24	86	9	65	40	6	2	50	1.42
65721571--65721629	17	3.5	16	75	11	64	28	10	1	59	1.40
65721649--65721674	6	4.3	6	100	0	52	15	0	0	84	0.62
65727148--65727180	17	1.9	17	93	0	57	9	0	39	51	1.34
65733005--65733045	21	2.0	21	81	18	50	31	19	26	21	1.97
65743744--65743794	24	2.1	26	85	10	72	54	7	5	31	1.53
65745448--65745486	20	1.9	21	94	5	71	64	0	2	33	1.08
65746263--65746290	11	2.5	11	100	0	56	32	0	0	67	0.91
65746236--65746289	20	2.7	20	75	16	58	31	0	1	66	1.02
65747071--65747135	32	2.0	32	96	0	121	66	13	6	13	1.43
65748283--65748317	16	2.3	15	90	5	52	62	2	2	31	1.24
65748459--65748501	20	2.1	21	82	4	52	62	6	2	27	1.33
65748631--65748673	23	2.0	23	86	9	63	51	6	13	27	1.67
65748637--65748686	23	2.2	23	82	13	59	54	10	12	24	1.67
65749244--65749268	13	1.9	13	100	0	50	88	0	0	12	0.53
65749245--65749291	14	3.4	13	81	18	51	76	0	8	14	1.01
65749519--65749576	24	2.5	23	91	5	91	5	3	20	70	1.21
65750254--65750635	93	4.2	92	81	9	371	36	19	16	26	1.93
65750477--65750509	14	2.4	14	94	0	57	63	6	12	18	1.48
65750703--65751267	147	3.8	146	88	4	796	31	20	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65750703--65751267	75	7.7	73	85	3	733	31	20	17	30	1.96
65750703--65751267	220	2.6	219	86	3	776	31	20	17	30	1.96
65761002--65761052	24	2.1	26	85	10	72	54	7	5	31	1.53
65761147--65761180	4	8.2	4	93	6	59	73	0	0	26	0.83
65762646--65762683	19	2.0	20	94	5	69	63	0	2	34	1.09
65763318--65763387	34	2.1	32	84	15	88	32	7	1	58	1.34
65763431--65763504	9	7.7	9	70	19	51	28	0	5	66	1.14
65764270--65764334	32	2.0	32	96	0	121	66	13	6	13	1.43
65765482--65765516	16	2.3	15	90	5	52	62	2	2	31	1.24
65765657--65765699	20	2.1	21	82	4	52	62	6	2	27	1.33
65765828--65765870	23	2.0	23	86	9	63	51	6	13	27	1.67
65765834--65765883	23	2.2	23	82	13	59	54	10	12	24	1.67
65766441--65766465	13	1.9	13	100	0	50	88	0	0	12	0.53
65766702--65766753	22	2.3	22	86	3	68	3	1	23	71	1.13
65766714--65766770	22	2.6	22	91	0	87	5	1	19	73	1.11
65778568--65778623	15	3.9	15	75	6	55	37	1	0	60	1.07
65778562--65778623	21	2.9	21	80	4	70	33	1	0	64	1.03
65784713--65784854	37	3.8	37	80	5	135	23	15	26	35	1.94
65798338--65798482	30	4.8	30	87	1	186	26	48	4	20	1.68
65798961--65799005	23	1.9	24	86	13	67	35	4	0	60	1.17
65799003--65799053	23	2.2	24	85	3	68	37	1	5	54	1.36
65799037--65799165	25	5.0	27	72	10	81	31	6	3	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65799039--65799196	25	6.1	25	71	14	79	31	6	3	57	1.43
65798961--65799093	25	5.5	23	66	22	60	35	3	2	58	1.28
65798981--65799093	16	7.4	15	65	17	63	35	3	2	58	1.29
65799043--65799096	15	3.5	16	73	19	51	33	3	0	62	1.12
65799117--65799206	23	3.9	24	75	12	73	33	6	5	54	1.50
65799326--65799373	16	3.1	15	90	6	69	31	2	2	64	1.16
65799326--65799377	8	6.5	8	82	8	61	30	1	1	65	1.14
65807667--65807842	71	2.5	70	85	1	219	28	14	22	34	1.94
65807860--65808202	77	4.5	76	86	5	444	32	15	19	32	1.93
65807846--65808083	72	3.2	71	85	8	314	32	15	18	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230