genome.fa.s19.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  120  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34880772--34880803	15	2.1	15	94	0	55	31	9	6	53	1.58
34882477--34882546	29	2.4	30	85	2	88	17	24	14	44	1.85
34891400--34891622	29	7.6	29	76	13	147	22	22	13	41	1.88
34891401--34891620	60	3.7	60	75	11	186	23	23	13	40	1.89
34891521--34891644	29	4.3	29	88	0	158	27	24	9	38	1.86
34894654--34894686	16	2.0	17	88	5	50	60	3	18	18	1.49
34894835--34895102	87	3.1	87	87	3	387	36	15	25	22	1.93
34894835--34895102	29	9.2	29	79	5	231	36	15	25	22	1.93
34894835--34895102	58	4.6	58	81	4	317	36	15	25	22	1.93
34899215--34899349	25	5.5	24	74	5	108	31	22	21	24	1.98
34899215--34899324	49	2.2	49	87	6	159	31	20	22	24	1.98
34900120--34900148	14	2.1	14	100	0	58	27	6	20	44	1.77
34909459--34909553	25	3.8	25	78	2	93	28	24	21	26	1.99
34915840--34915973	67	2.0	67	95	0	241	39	7	18	34	1.79
34927633--34927660	14	2.0	14	100	0	56	57	0	7	35	1.26
34933440--34933617	27	6.6	27	77	6	137	30	28	15	25	1.96
34933440--34933617	54	3.3	54	78	7	164	30	28	15	25	1.96
34941446--34941623	27	6.6	27	77	6	137	30	28	15	25	1.96
34941446--34941623	54	3.3	54	78	7	164	30	28	15	25	1.96
34951568--34951601	14	2.3	15	90	5	52	17	26	2	52	1.58
34953315--34953407	17	5.9	17	71	14	83	38	5	5	50	1.48
34953308--34953425	30	3.9	30	71	14	107	37	5	5	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953308--34953360	13	3.8	13	77	18	52	33	7	3	54	1.46
34953356--34953395	16	2.6	15	88	7	62	42	2	5	50	1.37
34953326--34953473	61	2.4	61	87	0	215	41	4	4	49	1.45
34953642--34953718	21	3.7	21	79	10	68	44	20	2	32	1.66
34953700--34954168	9	54.3	9	66	17	158	44	19	3	31	1.67
34953700--34953799	16	5.9	17	75	9	73	46	21	1	32	1.58
34953712--34953799	25	3.5	25	76	4	97	45	21	1	31	1.59
34953881--34953922	20	2.1	20	90	0	66	42	23	2	30	1.67
34953901--34954114	34	6.3	34	73	11	170	44	20	4	30	1.72
34953902--34954102	69	2.9	69	89	1	305	43	21	4	30	1.74
34954058--34954139	25	3.3	25	85	0	110	47	14	2	35	1.58
34959613--34959782	66	2.6	65	86	3	225	39	19	27	13	1.89
34959753--34959823	21	3.4	21	86	0	97	32	15	45	7	1.73
34960154--34960333	86	2.1	86	81	10	208	23	18	28	30	1.98
34960159--34960333	43	4.1	42	71	14	142	23	17	28	30	1.97
34965129--34965165	16	2.3	16	95	0	65	45	8	13	32	1.73
34982375--34982546	79	2.2	79	84	3	220	25	21	27	25	1.99
34982322--34982544	40	5.6	39	81	8	209	25	21	27	25	1.99
34982402--34982579	79	2.2	80	80	3	191	25	21	28	24	1.99
34987790--34987967	27	6.6	27	83	3	205	26	15	28	29	1.96
34987791--34987946	82	1.9	81	88	3	233	26	15	28	29	1.96
34987787--34987967	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34987872--34987978	27	3.9	27	85	1	70	26	14	28	30	1.95
34990561--34990617	22	2.7	19	77	20	51	64	0	15	19	1.28
34992735--34992776	19	2.4	18	84	11	52	71	0	21	7	1.09
34992894--34992929	17	2.1	17	100	0	72	44	0	16	38	1.48
34997202--34997495	151	1.9	151	89	0	453	27	29	17	26	1.97
35002461--35002489	5	5.8	5	100	0	58	0	17	0	82	0.66
35021515--35021558	22	2.0	22	86	0	61	59	6	2	31	1.36
35025055--35025114	31	2.0	31	83	9	79	51	10	3	35	1.52
35032828--35032871	22	2.0	22	81	0	52	56	11	2	29	1.46
35038687--35038723	19	1.9	19	88	0	56	18	18	0	62	1.34
35039140--35039271	66	2.0	66	83	5	169	23	20	20	35	1.96
35048140--35048236	38	2.5	37	78	11	104	51	4	2	42	1.32
35050052--35050121	27	2.6	27	79	4	79	30	40	15	14	1.87
35050718--35050750	12	2.9	12	86	13	52	9	6	9	75	1.18
35056963--35056994	16	2.0	16	93	0	55	25	15	0	59	1.36
35057215--35057438	101	2.2	101	77	7	231	31	26	15	26	1.96
35060595--35060648	20	2.7	20	70	0	54	33	20	25	20	1.97
35062290--35062321	12	2.7	12	95	0	55	18	21	0	59	1.38
35062303--35062364	27	2.3	27	83	10	74	9	17	3	69	1.29
35062327--35062446	12	10.0	12	69	19	63	8	17	3	70	1.25
35062327--35062363	14	2.7	14	84	15	51	8	16	0	75	1.02
35062325--35062432	6	17.7	6	69	9	67	6	17	3	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35063450--35063524	36	2.0	37	85	12	100	8	14	5	72	1.26
35063517--35063541	12	2.1	12	100	0	50	16	0	8	76	1.02
35065062--35065115	20	2.7	20	70	0	54	33	20	25	20	1.97
35066282--35066350	28	2.5	27	83	6	84	36	4	1	57	1.27
35076432--35076496	31	2.1	30	85	2	85	26	21	3	49	1.64
35076918--35076951	7	4.9	7	89	10	52	41	0	0	58	0.98
35079410--35079480	16	4.4	16	87	0	97	39	5	23	30	1.78
35079757--35079810	23	2.4	24	81	9	60	44	3	0	51	1.19
35082602--35082631	13	2.3	13	94	0	51	10	30	0	60	1.30
35084862--35084895	17	1.9	18	88	5	52	67	0	14	17	1.23
35087155--35087253	23	4.3	23	96	0	180	22	21	25	31	1.98
35087383--35087454	38	1.9	37	86	8	101	43	1	22	33	1.62
35096242--35096300	30	2.0	30	86	6	84	49	10	8	32	1.67
35097149--35097179	14	2.3	13	94	5	53	12	12	12	61	1.58
35106708--35106806	43	2.3	43	83	0	117	23	19	21	36	1.95
35117101--35117139	20	1.9	21	85	15	55	53	15	0	30	1.42
35119294--35119363	36	1.9	36	97	0	131	55	7	7	30	1.54
35119331--35119379	26	2.0	26	84	8	66	57	6	8	28	1.52
35124180--35124206	7	3.9	7	100	0	54	14	0	0	85	0.61
35125848--35125910	29	2.2	28	80	2	72	31	1	4	61	1.26
35133048--35133105	25	2.3	25	100	0	116	15	13	12	58	1.63
35136974--35137068	47	2.0	47	97	0	181	29	7	23	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35136980--35137078	47	2.1	47	92	0	162	29	9	24	37	1.86
35137418--35137461	23	1.9	23	90	0	70	22	2	31	43	1.66
35141953--35142030	26	3.0	25	81	7	93	35	14	8	41	1.77
35142279--35142319	10	4.4	10	79	17	52	17	21	0	60	1.35
35144487--35144696	29	7.2	29	83	2	251	37	14	25	22	1.93
35149407--35149549	75	1.9	75	82	2	180	34	4	18	42	1.71
35149641--35149734	41	2.3	41	81	3	100	29	15	23	30	1.96
35149859--35150074	63	3.2	67	79	9	233	30	10	15	43	1.80
35149925--35150022	32	3.1	32	68	24	89	30	8	19	41	1.80
35152356--35152466	39	2.9	38	82	2	132	35	9	13	42	1.76
35158069--35158109	14	2.7	15	85	7	57	21	2	2	73	1.07
35166231--35166264	13	2.8	12	87	12	52	38	17	8	35	1.81
35166381--35166497	39	3.0	39	82	2	128	37	9	11	41	1.73
35169720--35169897	27	6.6	27	83	3	205	26	15	28	29	1.96
35169721--35169876	82	1.9	81	88	3	233	26	15	28	29	1.96
35169717--35169897	82	2.2	81	83	2	229	27	15	27	29	1.96
35177900--35178076	27	6.6	27	81	5	187	27	14	27	29	1.95
35177901--35178055	81	1.9	81	85	5	215	27	14	27	29	1.95
35177897--35178076	81	2.2	81	81	3	211	27	15	27	30	1.96
35180847--35180898	14	3.6	14	82	10	68	51	5	1	40	1.37
35181423--35181460	11	3.5	11	85	0	58	47	0	0	52	1.00
35184434--35184504	24	3.0	23	76	12	72	53	4	8	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35186008--35186116	40	2.6	41	81	8	132	29	22	19	29	1.98
35186432--35186866	88	5.0	88	92	2	691	22	26	23	26	2.00
35193259--35193307	22	2.2	22	88	0	71	51	6	10	32	1.61
35194164--35194210	17	2.5	20	80	16	64	8	14	2	74	1.15
35194171--35194210	18	2.3	18	91	4	64	10	15	2	72	1.21
35194181--35194219	18	2.3	18	86	8	55	12	15	0	71	1.14
35195159--35195225	9	7.4	9	83	6	91	41	19	10	28	1.84
35195328--35195371	18	2.4	18	92	0	70	15	2	40	40	1.60
35195926--35195973	24	2.0	24	91	0	78	43	18	2	35	1.62
35207996--35208021	13	2.0	13	100	0	52	53	0	15	30	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230