genome.fa.s19.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  149  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43897365--43897914	47	11.6	47	91	3	768	27	29	9	33	1.88
43897581--43897655	23	3.3	22	64	29	57	24	30	13	32	1.93
43899362--43899478	56	2.1	56	98	0	225	23	23	8	44	1.81
43908771--43908848	23	3.4	23	85	7	104	48	11	5	34	1.61
43912527--43912826	154	2.0	150	87	3	431	22	19	18	39	1.92
43919763--43919789	13	2.1	13	100	0	54	44	0	14	40	1.46
43919804--43919923	10	12.7	9	66	19	57	31	3	3	61	1.28
43919802--43919853	18	2.9	18	81	16	63	28	1	1	67	1.12
43919804--43919884	9	8.6	10	67	16	57	29	2	2	65	1.18
43920074--43920245	95	1.8	92	82	6	220	34	6	13	44	1.71
43924887--43924923	19	1.9	19	89	10	58	2	8	18	70	1.25
43926632--43926665	18	1.9	17	88	5	50	20	5	11	61	1.50
43937804--43938098	51	5.8	50	79	6	317	30	26	14	28	1.95
43937804--43938098	102	2.9	102	90	0	430	30	26	14	28	1.95
43937805--43938090	153	1.9	151	83	5	369	30	26	14	28	1.95
43938819--43939306	249	2.0	249	96	0	895	39	18	16	25	1.91
43942791--43942995	40	5.1	40	84	4	236	26	27	21	24	1.99
43947862--43948055	51	3.8	51	79	9	243	29	27	17	24	1.97
43947860--43948044	101	1.8	102	92	3	320	30	27	18	24	1.98
43947856--43948078	101	2.2	103	82	7	287	30	28	16	25	1.97
43963077--43963175	49	2.0	49	96	1	182	41	16	27	15	1.88
43968061--43968176	38	3.0	38	87	5	153	33	6	12	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43974488--43974535	24	2.0	24	88	8	71	20	10	18	50	1.76
43978401--43978458	29	2.0	29	96	0	107	43	17	6	32	1.75
43981047--43981131	25	3.5	24	86	1	107	27	22	20	30	1.98
43981067--43981165	25	4.0	24	81	7	101	29	20	23	27	1.99
43981101--43981178	25	3.2	25	81	5	70	29	20	24	25	1.99
43989499--43989653	28	5.6	28	78	7	136	35	12	25	25	1.92
43996484--43996868	29	13.2	29	75	5	303	37	12	25	24	1.90
44000693--44000726	17	1.9	18	94	5	61	41	5	14	38	1.70
44003989--44004111	29	4.2	30	80	3	142	35	15	29	19	1.93
44003989--44004111	59	2.1	59	85	0	165	35	15	29	19	1.93
44009398--44009519	40	3.1	39	85	2	145	33	18	27	20	1.96
44012805--44012859	16	3.2	18	80	19	64	25	0	27	47	1.52
44020144--44020211	34	2.0	34	100	0	136	26	5	26	41	1.78
44023465--44023553	44	2.0	44	95	0	160	34	12	19	33	1.89
44027781--44027837	24	2.4	24	96	0	105	19	33	12	35	1.89
44029377--44029507	27	4.9	27	84	1	147	21	17	21	39	1.92
44029379--44029507	53	2.4	53	90	1	195	20	17	21	39	1.92
44043457--44043602	38	3.8	39	80	11	133	45	10	8	34	1.71
44045987--44046215	112	2.0	112	93	0	386	23	24	15	36	1.94
44046761--44046820	22	2.7	21	80	15	59	3	23	6	66	1.30
44049994--44050082	38	2.3	39	84	9	121	46	11	7	34	1.69
44052538--44052581	21	2.1	21	86	0	61	38	11	6	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44057509--44057543	17	2.1	17	88	0	52	8	14	20	57	1.63
44058419--44058491	31	2.4	31	83	4	85	35	9	2	52	1.49
44061609--44061645	9	4.1	9	92	0	65	29	10	13	45	1.77
44064781--44064831	24	2.0	26	81	7	61	37	5	3	52	1.44
44065111--44065517	108	3.8	108	87	2	527	29	17	19	32	1.95
44077246--44077496	41	5.8	43	78	11	176	28	18	23	29	1.98
44077157--44077517	44	8.4	44	74	7	260	28	20	22	27	1.99
44077208--44077457	131	1.9	131	86	1	358	29	18	23	28	1.98
44077336--44077517	85	2.1	85	94	0	319	26	21	21	29	1.99
44079462--44079512	24	2.0	26	81	7	61	37	5	3	52	1.44
44079805--44080203	108	3.7	108	89	3	527	30	18	18	32	1.95
44085551--44085582	7	4.6	7	96	0	55	0	31	15	53	1.43
44085580--44085621	21	2.0	21	95	0	75	4	35	23	35	1.76
44086750--44086780	16	1.9	16	93	0	53	16	9	12	61	1.56
44087984--44088147	72	2.3	72	88	4	233	25	5	12	56	1.57
44090195--44090255	13	4.7	13	82	8	79	37	24	4	32	1.77
44090607--44090635	10	2.7	11	89	10	51	20	6	0	72	1.07
44092843--44093014	35	4.9	34	86	2	218	24	26	16	32	1.96
44093625--44093737	35	3.2	35	87	0	163	21	23	19	36	1.95
44095260--44095288	13	2.1	14	93	6	51	34	3	0	62	1.12
44095259--44095291	14	2.5	13	86	13	50	30	3	0	66	1.06
44096924--44096990	28	2.3	30	80	10	77	37	5	2	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44100898--44100944	11	4.4	11	87	12	71	48	10	0	40	1.38
44101727--44101752	13	2.0	13	100	0	52	53	15	15	15	1.73
44103312--44103489	27	6.6	27	82	3	115	29	28	15	26	1.96
44103333--44103488	82	1.9	81	88	3	233	29	28	15	26	1.96
44103312--44103488	54	3.3	54	81	6	205	29	28	15	26	1.96
44119402--44119469	34	2.0	34	85	5	93	20	26	23	29	1.99
44123655--44123688	15	2.2	16	89	5	52	41	0	5	52	1.25
44123957--44123991	17	2.0	18	88	5	54	34	5	2	57	1.37
44128228--44128272	22	2.0	22	95	0	81	46	20	13	20	1.83
44139276--44139303	13	2.2	13	100	0	56	17	0	28	53	1.44
44145872--44145924	24	2.2	25	86	3	72	45	1	28	24	1.64
44157344--44157420	33	2.3	34	86	4	102	46	18	6	28	1.73
44157837--44157891	24	2.2	24	90	3	83	38	0	40	21	1.54
44158320--44158366	24	2.0	24	83	8	60	53	6	6	34	1.52
44170463--44170492	14	2.1	14	93	0	51	53	6	3	36	1.44
44176076--44176259	40	4.7	38	79	9	160	26	21	27	25	1.99
44176128--44176292	79	2.1	78	80	9	185	28	18	26	26	1.98
44180275--44180324	14	3.3	15	80	11	57	76	8	12	4	1.15
44181386--44181800	44	9.6	44	70	10	248	28	26	18	26	1.98
44181427--44181631	88	2.3	88	93	0	338	31	24	16	27	1.96
44181192--44181630	217	2.0	218	81	3	510	29	24	17	28	1.97
44181215--44181803	305	1.9	305	97	0	1106	28	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44181742--44181865	62	2.0	62	96	0	230	35	20	17	25	1.95
44181525--44182082	279	2.0	279	97	0	1062	28	24	18	27	1.98
44182119--44182449	127	2.6	128	91	0	547	26	24	17	31	1.97
44183750--44183790	7	5.9	7	88	11	66	14	14	0	70	1.16
44183748--44183790	21	2.1	20	95	4	77	16	16	0	67	1.24
44184681--44184742	26	2.4	25	76	12	63	11	11	9	67	1.42
44190680--44190726	17	2.8	17	74	6	51	76	4	12	6	1.12
44198225--44198325	40	2.5	39	78	7	96	39	16	27	15	1.90
44200441--44200479	21	1.9	20	89	5	60	56	0	2	41	1.13
44206441--44206664	40	5.6	40	86	7	287	24	23	28	24	2.00
44206440--44206697	119	2.2	119	82	6	301	25	22	27	24	2.00
44209122--44209165	22	2.0	22	100	0	88	40	0	18	40	1.50
44214084--44214268	40	4.7	40	82	6	207	24	21	27	25	1.99
44214084--44214240	79	2.0	80	83	6	203	25	22	26	25	2.00
44214137--44214301	79	2.1	79	79	6	174	26	19	28	25	1.99
44222054--44222243	79	2.4	82	84	7	239	24	22	27	25	2.00
44222059--44222243	40	4.6	41	84	7	231	24	22	27	25	2.00
44222060--44222276	79	2.7	79	79	7	201	26	22	27	24	2.00
44224627--44224681	6	9.2	6	76	7	58	76	1	5	16	1.06
44224617--44224681	29	2.3	27	80	15	69	73	1	6	18	1.11
44230348--44230399	23	2.3	23	93	0	86	28	21	15	34	1.94
44233337--44233887	275	2.0	275	97	0	1030	34	17	17	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44238797--44238871	30	2.5	30	84	0	96	24	25	10	40	1.87
44238856--44238935	30	2.7	30	76	0	97	18	28	12	40	1.87
44238826--44239026	60	3.4	59	75	6	190	22	27	14	34	1.93
44238916--44239072	30	5.4	29	70	12	90	25	25	12	36	1.91
44238826--44239026	90	2.2	90	79	4	210	22	27	14	34	1.93
44246541--44246610	30	2.3	30	85	0	86	25	27	11	35	1.90
44256836--44257432	47	12.5	47	92	3	849	28	28	8	33	1.87
44256836--44257432	143	4.2	143	90	4	891	28	28	8	33	1.87
44258699--44258877	85	2.1	85	98	0	349	26	27	8	37	1.85
44260133--44260611	40	12.1	40	92	0	748	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230