genome.fa.s19.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  118  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34327223--34327410	59	3.2	58	65	24	140	40	3	4	51	1.37
34327286--34327468	56	3.1	58	66	23	146	42	2	6	49	1.39
34327452--34327486	18	2.0	17	88	5	52	45	0	0	54	0.99
34327440--34327714	147	1.9	149	95	1	500	47	2	3	46	1.35
34327599--34327633	18	2.0	17	88	5	52	45	0	0	54	0.99
34327795--34327889	45	2.1	45	86	1	129	33	26	5	34	1.79
34327870--34327921	16	3.2	16	91	0	77	36	34	0	28	1.58
34336579--34336609	16	2.0	15	93	6	53	32	0	29	38	1.57
34339069--34339193	46	2.7	46	87	1	171	16	22	15	45	1.85
34340259--34340357	49	2.0	49	98	0	189	37	12	5	45	1.63
34343023--34343101	37	2.1	37	88	0	113	26	31	17	24	1.97
34343220--34343609	47	8.1	47	91	3	582	28	30	9	31	1.88
34343231--34343609	100	3.9	98	93	2	631	28	30	9	31	1.89
34346879--34347149	40	6.8	40	79	5	189	25	28	21	24	1.99
34346894--34347149	80	3.2	78	80	7	250	25	28	21	24	1.99
34347463--34347534	29	2.5	29	86	4	92	27	31	13	26	1.94
34347516--34347618	43	2.4	43	100	0	206	26	35	15	22	1.94
34349485--34349557	37	2.0	37	86	0	101	28	30	19	21	1.98
34349678--34350111	47	9.1	49	90	5	628	29	29	8	31	1.87
34350027--34350115	43	2.1	43	97	0	169	29	29	8	32	1.88
34361246--34361453	27	7.7	27	77	12	160	25	14	19	40	1.89
34361247--34361453	54	3.8	52	79	7	200	25	14	18	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34361247--34361453	81	2.6	81	82	3	229	25	14	18	41	1.89
34361660--34361694	17	2.0	18	88	5	54	20	40	28	11	1.87
34362841--34362894	25	2.2	25	86	0	72	18	48	9	24	1.77
34384587--34384712	40	3.2	40	83	1	155	31	18	21	28	1.97
34384614--34384736	39	3.1	39	80	2	138	30	22	20	26	1.98
34384642--34385234	155	3.9	149	77	10	487	31	16	21	30	1.95
34385411--34385450	21	1.9	21	84	0	53	20	0	25	55	1.44
34385604--34385713	28	4.0	28	70	15	77	20	0	30	48	1.56
34385670--34385711	20	2.1	20	82	8	50	14	0	35	50	1.43
34385604--34385713	14	7.9	14	70	11	57	20	0	30	48	1.56
34386172--34386227	18	3.1	18	89	0	85	5	42	17	33	1.72
34387946--34388186	9	26.1	9	70	15	127	45	17	2	34	1.61
34388079--34388186	57	1.9	57	94	0	189	42	22	0	34	1.60
34393892--34394024	42	3.1	43	75	10	123	33	13	24	28	1.93
34393917--34394077	43	3.8	43	84	2	191	29	15	24	31	1.96
34393908--34394086	86	2.1	85	83	6	227	28	16	26	29	1.97
34394118--34394147	15	2.0	15	100	0	60	20	20	26	33	1.97
34396886--34396944	11	5.4	11	75	0	55	37	45	3	13	1.60
34396886--34396948	22	2.9	22	85	0	90	38	42	3	15	1.63
34403221--34403256	18	2.0	18	100	0	72	38	27	0	33	1.57
34405374--34405638	40	6.7	40	83	5	268	26	27	20	24	1.99
34413374--34413583	40	5.3	40	89	3	228	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34413374--34413636	120	2.2	119	79	6	273	26	27	20	25	1.99
34413372--34413636	80	3.3	81	80	7	215	27	27	20	24	1.99
34413568--34413645	40	1.9	41	82	10	97	28	28	20	23	1.99
34416551--34416604	28	1.9	28	92	0	90	29	25	27	16	1.97
34416722--34416772	26	2.0	26	88	0	75	33	17	27	21	1.96
34416852--34417024	32	5.4	32	70	5	125	38	21	21	18	1.94
34416852--34417024	64	2.7	65	82	3	199	38	21	21	18	1.94
34417195--34417268	24	3.1	23	82	5	85	47	25	8	18	1.76
34417303--34417660	27	13.3	27	85	4	386	24	20	18	36	1.95
34417323--34417684	188	1.9	188	85	2	494	23	20	19	37	1.95
34419034--34419085	20	2.5	21	90	9	81	40	9	11	38	1.74
34431008--34431115	39	2.7	39	77	4	110	37	22	21	19	1.95
34431167--34431353	41	4.5	41	80	7	191	20	19	25	34	1.96
34431183--34431344	85	1.9	84	88	3	245	21	19	24	33	1.97
34432550--34432627	9	8.7	9	85	5	104	25	11	21	41	1.87
34434812--34434858	19	2.5	19	80	16	53	70	10	0	19	1.16
34434827--34434865	19	2.0	20	85	5	53	69	10	0	20	1.17
34436660--34436686	5	5.4	5	100	0	54	18	0	0	81	0.69
34437200--34437290	43	2.1	43	88	6	132	35	10	8	45	1.71
34437658--34437841	43	4.3	43	86	1	244	25	17	28	28	1.98
34437964--34437997	16	2.1	16	100	0	68	29	5	5	58	1.45
34438456--34438554	43	2.3	44	87	1	146	31	25	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34444218--34444316	43	2.3	44	89	1	146	29	27	17	26	1.97
34453046--34453175	54	2.4	55	97	1	244	27	19	28	24	1.98
34453046--34453199	54	2.8	53	92	4	229	31	18	27	22	1.97
34457725--34457764	14	2.7	15	88	3	55	50	2	30	17	1.59
34457874--34458085	115	1.8	116	87	5	322	34	17	15	32	1.92
34465365--34465587	119	1.9	120	83	6	292	25	27	21	24	1.99
34465363--34465587	40	5.7	40	84	6	278	25	28	21	24	1.99
34482113--34482295	40	4.6	40	83	6	131	25	21	26	26	1.99
34482166--34482295	40	3.3	39	86	3	170	24	21	26	26	1.99
34499583--34499693	51	2.2	51	80	7	129	55	6	5	32	1.48
34499954--34499991	12	2.8	13	88	11	51	65	0	0	34	0.93
34499970--34500003	15	2.3	15	89	0	50	70	2	0	26	1.01
34500212--34500250	19	2.0	21	85	10	55	69	5	10	15	1.34
34500436--34500518	21	3.9	22	77	15	59	40	15	6	37	1.72
34500436--34500478	23	1.9	23	85	4	61	44	13	2	39	1.57
34500459--34500533	19	3.8	19	86	6	105	37	17	8	37	1.79
34500470--34500532	21	3.1	21	86	9	103	38	15	9	36	1.81
34501770--34501836	22	3.0	22	80	0	71	41	19	22	16	1.90
34502132--34502167	16	2.3	16	95	4	65	30	5	2	61	1.33
34502947--34502996	5	9.4	5	85	10	64	58	0	0	42	0.98
34502957--34502997	8	4.9	8	82	11	55	60	0	0	39	0.96
34515033--34515084	22	2.4	21	78	15	52	42	1	21	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34524676--34524936	40	6.6	40	85	5	264	24	27	21	25	1.99
34524868--34524945	40	1.9	41	82	10	97	26	28	20	24	1.99
34543454--34543491	6	6.3	6	87	0	58	31	2	2	63	1.22
34543601--34543634	3	11.3	3	93	0	59	32	2	0	64	1.08
34548689--34548750	20	3.2	19	77	8	54	35	3	4	56	1.37
34550624--34550668	18	2.5	18	96	0	81	62	11	8	17	1.53
34551000--34551136	50	2.7	50	84	2	177	35	25	13	25	1.93
34555609--34555895	50	5.8	50	79	8	282	32	17	26	24	1.97
34555619--34555888	75	3.6	74	74	14	252	32	17	25	24	1.97
34555618--34555895	25	11.2	24	73	11	179	32	17	26	24	1.97
34557267--34557491	119	1.9	120	83	6	296	26	27	21	24	1.99
34557267--34557491	40	5.7	40	85	6	287	26	27	21	24	1.99
34559577--34559782	65	3.2	65	64	15	172	33	19	8	38	1.82
34559584--34559847	130	2.0	130	99	0	519	32	18	7	40	1.80
34559640--34559847	65	3.2	64	64	16	165	33	17	6	41	1.76
34563617--34563749	69	1.9	70	90	1	214	32	14	16	36	1.89
34565137--34565494	47	7.6	47	92	1	572	33	8	29	29	1.87
34569103--34569154	13	3.7	13	76	18	59	7	34	32	25	1.84
34569096--34569161	30	2.2	30	100	0	132	12	37	28	21	1.89
34570387--34570502	25	4.6	25	73	11	96	32	22	23	21	1.98
34570398--34570502	50	2.1	50	89	3	158	33	21	23	20	1.97
34570420--34570617	25	8.0	25	69	11	104	33	18	24	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34579630--34579657	7	4.0	7	100	0	56	42	0	28	28	1.56
34579854--34579939	30	2.7	32	75	12	88	51	15	18	15	1.77
34587355--34587403	24	2.0	24	96	0	89	32	18	12	36	1.88
34588858--34588891	14	2.3	15	90	5	52	23	0	5	70	1.09
34591433--34591474	9	4.6	9	85	5	57	14	45	0	40	1.45
34591433--34591474	19	2.3	18	84	8	57	14	45	0	40	1.45
34594969--34594998	15	2.0	15	93	0	51	40	16	0	43	1.48
34595101--34595133	13	2.5	13	95	0	57	33	21	3	42	1.68
34599292--34599340	22	2.2	22	96	0	89	20	8	36	34	1.82
34609696--34609850	50	3.1	50	68	7	125	23	19	23	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230