genome.fa.s19.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  187  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56250875--56251071	98	2.0	98	94	0	349	28	9	22	39	1.85
56252979--56253003	11	2.3	11	100	0	50	44	0	0	56	0.99
56256035--56256202	27	6.3	27	77	2	115	27	18	14	38	1.90
56256022--56256199	54	3.3	54	80	2	153	28	19	15	37	1.91
56258556--56258640	27	3.1	27	82	0	71	23	30	11	34	1.91
56258760--56258914	54	2.9	53	78	10	145	27	23	17	32	1.97
56258782--56258914	27	5.0	26	83	1	140	29	21	17	31	1.96
56271218--56271557	51	6.7	51	79	6	309	30	26	15	27	1.96
56271215--56271557	102	3.4	102	81	5	374	30	26	15	27	1.96
56271213--56271556	153	2.3	150	78	7	365	30	26	15	27	1.96
56276897--56276936	18	2.2	18	86	0	53	20	20	27	32	1.97
56284670--56284703	17	2.0	17	100	0	68	47	17	0	35	1.48
56290404--56290477	37	2.0	37	100	0	148	35	8	18	37	1.81
56291686--56291803	54	2.3	50	82	10	132	27	11	20	41	1.85
56295088--56295142	27	2.0	27	82	10	67	47	1	9	41	1.46
56295775--56295800	13	2.0	13	100	0	52	46	0	0	53	1.00
56301368--56301410	12	3.5	12	78	6	50	34	25	0	39	1.56
56301573--56301659	21	4.1	21	79	7	104	36	22	21	18	1.95
56301573--56301658	23	4.0	23	77	11	101	37	23	22	17	1.94
56301573--56301659	44	2.0	41	84	6	111	36	22	21	18	1.95
56301982--56302056	19	4.0	19	72	20	77	37	26	0	36	1.57
56302941--56302987	15	3.0	15	84	6	58	4	19	4	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56302991--56303059	5	13.4	5	76	15	61	56	4	0	39	1.19
56302998--56303062	21	3.1	21	76	10	62	58	4	0	36	1.19
56304676--56304739	12	5.3	12	71	0	56	54	21	12	10	1.68
56304667--56304739	24	3.0	24	97	0	137	52	23	12	12	1.72
56305032--56305059	13	2.2	13	100	0	56	46	25	7	21	1.76
56305996--56306063	22	3.1	22	81	8	84	39	20	23	16	1.91
56306058--56306123	22	2.7	23	79	13	71	30	18	31	19	1.96
56305996--56306125	47	2.8	45	79	5	136	36	20	26	16	1.94
56306069--56306111	22	2.0	22	95	0	77	30	20	32	16	1.95
56307077--56307110	17	2.0	17	88	0	50	35	11	17	35	1.87
56314555--56314610	15	3.7	15	87	0	85	21	7	37	33	1.81
56314555--56314612	30	1.9	30	92	0	98	22	6	36	34	1.81
56316851--56316898	21	2.3	21	92	0	78	25	25	31	18	1.98
56318012--56318047	18	1.9	19	94	5	65	50	5	0	44	1.25
56318016--56318058	18	2.3	18	84	11	52	51	6	0	41	1.29
56332170--56332282	27	4.2	26	76	5	100	17	17	32	31	1.94
56332188--56332349	54	3.0	54	80	5	141	18	17	32	32	1.94
56332273--56332373	27	3.7	27	74	2	87	20	18	31	28	1.97
56336955--56336996	18	2.3	19	83	4	50	11	11	7	69	1.37
56336961--56336997	19	2.0	18	89	5	56	10	13	5	70	1.32
56337778--56337836	27	2.3	27	81	18	74	66	3	8	22	1.34
56342201--56342234	12	2.8	12	95	0	59	58	0	23	17	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56342200--56342234	18	1.9	18	94	0	61	60	0	22	17	1.37
56350547--56350611	8	7.9	8	76	6	67	15	4	12	67	1.37
56353631--56353699	27	2.6	27	83	0	84	17	37	28	15	1.91
56353752--56353906	10	15.3	10	73	18	99	70	0	27	1	0.95
56353752--56353936	4	49.0	4	69	24	77	69	0	28	1	0.99
56353752--56353931	14	13.5	14	69	16	100	69	0	28	1	1.00
56353764--56353860	34	2.9	33	78	17	110	73	0	25	1	0.90
56353752--56353931	44	4.2	43	79	14	167	69	0	28	1	1.00
56353752--56353932	10	17.8	10	71	18	90	69	0	28	1	0.99
56354266--56355039	159	4.9	153	76	14	746	50	7	11	30	1.65
56354266--56355039	317	2.4	317	92	1	1291	50	7	11	30	1.65
56356694--56356719	12	2.2	12	100	0	52	26	38	26	7	1.83
56357111--56357143	14	2.4	14	100	0	66	36	6	0	57	1.23
56360181--56360306	40	3.1	41	77	10	109	48	12	5	33	1.64
56360461--56360499	10	3.8	10	83	6	51	2	23	0	74	0.94
56360588--56360677	27	3.3	27	92	3	146	18	24	34	22	1.96
56365924--56365976	4	13.5	4	80	11	65	73	3	0	22	0.99
56366897--56366971	19	3.8	19	89	6	123	36	18	10	34	1.86
56366890--56366967	40	2.0	38	92	5	129	35	19	10	34	1.85
56389898--56390162	134	2.0	132	90	2	415	38	14	15	32	1.88
56396597--56396672	32	2.3	33	82	11	84	77	3	7	10	1.10
56397536--56397584	21	2.4	21	83	10	57	73	0	14	12	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56397542--56397587	14	3.1	14	87	6	56	71	0	15	13	1.14
56398843--56399229	44	8.3	44	68	17	147	33	17	21	27	1.96
56398852--56399455	142	4.2	141	94	1	1001	33	17	20	28	1.95
56399278--56399371	44	2.1	44	84	0	116	31	20	19	28	1.97
56399513--56399924	50	8.3	50	74	3	337	35	23	17	23	1.95
56399481--56399876	100	4.0	101	83	3	453	35	22	17	23	1.96
56407163--56407202	17	2.2	19	86	8	57	65	0	15	20	1.28
56409014--56409058	23	2.0	23	90	0	72	28	17	15	37	1.91
56409037--56409626	199	3.0	199	96	0	1090	30	16	18	34	1.93
56410612--56410657	24	2.0	23	83	8	58	52	2	2	43	1.25
56428271--56428300	14	2.1	14	100	0	60	36	13	0	50	1.42
56440969--56441231	40	6.6	40	88	3	316	24	21	27	26	1.99
56448886--56449148	40	6.6	40	87	3	307	24	21	26	26	1.99
56448925--56449183	80	3.3	80	83	3	229	25	21	27	25	1.99
56451752--56451806	15	3.8	15	85	2	69	1	21	1	74	1.01
56453824--56453858	12	3.0	11	88	12	52	0	11	2	85	0.69
56453852--56453884	16	2.1	16	94	0	57	27	6	6	60	1.44
56459293--56459347	11	5.0	11	88	6	85	72	9	0	18	1.10
56459297--56459346	21	2.3	21	93	3	82	76	8	0	16	1.02
56459393--56459448	15	3.6	15	81	9	76	60	5	10	23	1.50
56459392--56459448	17	3.5	17	78	7	64	61	5	10	22	1.48
56481600--56481862	40	6.6	40	88	3	316	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56486101--56486289	44	4.3	44	70	9	127	30	21	22	25	1.99
56486236--56486355	44	2.7	43	81	6	118	33	20	22	24	1.97
56486823--56486877	20	2.8	20	88	0	92	49	38	10	1	1.49
56494179--56494209	15	2.1	15	93	0	53	25	3	19	51	1.62
56494668--56494709	21	2.0	21	90	0	66	23	23	23	28	2.00
56499087--56499146	30	2.0	30	90	0	93	15	20	41	23	1.89
56501265--56501302	19	2.0	19	90	10	60	15	2	7	73	1.17
56505350--56505394	19	2.3	19	84	3	54	31	6	0	62	1.21
56505429--56505471	16	2.8	15	79	6	50	34	4	4	55	1.41
56507654--56507695	22	1.9	22	85	9	59	28	14	2	54	1.52
56508013--56508080	30	2.2	31	84	2	84	48	5	19	26	1.71
56513627--56513657	12	2.5	13	94	5	55	16	22	0	61	1.34
56520016--56520092	40	1.9	40	89	0	118	37	20	9	32	1.84
56520884--56520954	37	1.9	37	86	11	101	32	4	1	61	1.23
56521128--56521153	11	2.4	11	100	0	52	38	0	0	61	0.96
56521421--56521459	7	5.6	7	100	0	78	53	0	0	46	1.00
56521662--56521725	34	1.9	33	81	12	78	60	0	3	35	1.12
56524449--56524509	18	3.6	17	77	18	56	32	3	1	62	1.21
56524743--56524798	25	2.2	25	87	0	76	28	19	21	30	1.98
56528118--56528144	2	13.5	2	100	0	54	0	51	0	48	1.00
56530880--56530917	6	6.3	6	96	0	67	50	31	15	2	1.58
56533365--56533507	48	3.0	48	84	4	189	16	37	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56542725--56542784	23	2.7	23	89	2	95	31	3	38	26	1.73
56543478--56543517	19	2.0	21	85	9	57	22	0	5	72	1.04
56549018--56549084	27	2.5	27	80	9	84	22	31	26	19	1.98
56557114--56557258	53	2.7	53	90	3	229	36	14	22	26	1.93
56557423--56557687	57	4.7	56	79	7	241	33	18	22	26	1.96
56557422--56557687	114	2.3	113	81	7	306	33	18	22	25	1.96
56557442--56557695	29	9.0	28	70	13	173	33	18	22	25	1.96
56561841--56562123	139	2.0	139	97	0	532	29	25	13	31	1.94
56565987--56566021	14	2.5	14	80	0	52	65	0	0	34	0.93
56570538--56570599	4	15.5	4	100	0	124	50	24	0	25	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230