genome.fa.s19.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  189  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56871629--56871891	79	3.3	80	86	7	328	26	22	26	24	2.00
56871681--56871923	79	3.1	79	84	7	248	27	21	26	24	1.99
56871681--56871897	118	1.8	118	82	7	280	27	21	27	23	1.99
56873507--56873557	19	2.7	19	90	0	84	41	15	9	33	1.80
56880565--56880607	19	2.2	20	84	12	63	4	11	18	65	1.42
56880566--56880606	18	2.2	19	91	4	66	4	12	19	63	1.46
56880767--56880930	87	1.9	87	91	3	267	26	10	9	53	1.65
56881004--56881203	103	1.9	102	84	8	260	26	9	12	52	1.68
56880846--56881329	254	1.9	254	83	6	631	27	12	12	47	1.77
56881884--56881935	15	3.6	14	78	17	52	32	46	0	21	1.52
56881899--56881940	7	5.9	7	83	5	57	30	50	0	19	1.48
56881910--56881942	15	2.2	15	100	0	66	36	51	0	12	1.39
56881909--56881963	22	2.5	22	82	2	58	38	43	0	18	1.50
56881959--56881993	15	2.4	14	86	9	52	40	37	0	22	1.55
56882538--56882692	73	2.1	73	82	7	190	25	23	23	27	2.00
56882592--56883033	114	3.9	114	88	2	611	25	25	22	26	2.00
56882934--56883077	72	2.0	72	86	0	198	22	22	25	29	1.99
56889668--56889744	40	1.9	40	97	0	145	38	18	20	22	1.93
56921863--56921904	18	2.3	18	87	0	57	28	14	26	30	1.95
56922605--56922767	49	3.3	49	85	3	211	33	23	12	30	1.92
56923947--56924578	134	4.7	134	80	4	659	33	17	12	36	1.88
56924661--56924904	134	1.8	134	83	5	323	33	15	11	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56924700--56925154	243	1.9	243	82	4	578	31	17	11	39	1.86
56925107--56925210	54	1.9	54	98	0	199	26	25	8	39	1.84
56926984--56927157	71	2.5	70	83	7	192	25	17	26	31	1.97
56930721--56930750	15	2.0	15	93	0	51	56	23	6	13	1.60
56935718--56935885	70	2.4	71	80	5	180	29	21	24	25	1.99
56947529--56947612	36	2.4	36	82	7	93	32	22	10	34	1.89
56947487--56948031	133	4.1	134	77	6	496	33	19	10	36	1.85
56947487--56948031	267	2.0	267	80	4	600	33	19	10	36	1.85
56948027--56948291	134	2.0	134	84	1	352	30	16	13	38	1.87
56954649--56954706	27	2.2	27	84	9	75	34	0	1	63	1.04
56962123--56962157	18	1.9	18	88	0	52	42	17	14	25	1.86
56971842--56971874	6	5.5	6	100	0	66	0	0	15	84	0.61
56982521--56982826	153	2.0	153	94	2	544	28	6	32	32	1.83
56983408--56983715	27	11.5	27	81	1	334	35	18	22	24	1.96
56983759--56983817	24	2.5	24	86	13	86	20	8	23	47	1.77
56983989--56984299	32	9.7	32	72	9	152	21	20	20	36	1.95
56983989--56984289	64	4.7	63	80	6	266	21	20	20	37	1.94
56984022--56984293	96	2.8	95	75	10	250	20	20	21	37	1.94
56984181--56984319	32	4.4	32	75	4	102	20	20	20	37	1.95
56986158--56986207	23	2.2	23	100	0	100	52	12	14	22	1.74
56992941--56992975	17	2.1	17	100	0	70	42	28	11	17	1.83
56993333--56993428	47	2.0	47	100	0	192	25	10	20	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56996916--56996962	24	2.0	24	91	0	76	36	2	6	55	1.37
56999624--56999666	22	2.0	22	90	0	68	16	9	34	39	1.80
56999952--57000310	44	8.2	44	87	1	432	25	24	21	29	1.99
57014053--57014095	22	2.0	22	90	0	68	16	9	34	39	1.80
57020942--57020977	18	1.9	19	88	5	56	55	2	2	38	1.29
57029038--57029081	21	2.0	21	86	4	61	72	4	11	11	1.25
57030182--57030210	14	2.0	15	93	6	51	13	10	0	75	1.04
57033803--57033837	15	2.4	15	90	4	54	31	0	5	62	1.18
57040712--57040786	19	3.8	19	89	6	123	36	10	17	36	1.84
57041345--57041421	29	2.8	27	82	9	84	37	2	2	57	1.27
57045635--57046077	46	10.6	45	80	15	442	34	14	21	28	1.93
57045671--57045942	36	7.0	36	79	16	285	36	13	20	28	1.92
57045635--57046034	82	4.9	82	85	12	552	35	14	21	29	1.92
57045835--57045942	35	3.0	35	95	2	189	37	12	20	29	1.90
57045753--57045988	117	2.0	118	94	0	411	36	13	20	29	1.92
57050703--57051110	44	9.3	44	61	7	146	26	29	24	20	1.99
57050689--57051176	88	5.5	88	91	0	760	28	27	23	20	1.99
57052041--57052115	19	3.8	19	89	6	123	36	10	17	36	1.84
57056833--57056961	47	2.8	47	82	5	158	28	5	24	41	1.77
57061118--57061311	82	2.4	81	85	5	257	23	28	13	34	1.93
57061118--57061307	41	4.7	41	81	2	215	23	28	13	33	1.93
57064744--57064810	10	7.4	9	74	17	59	34	1	1	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57064817--57064853	19	2.0	19	89	5	58	40	0	2	56	1.13
57064818--57064865	18	2.6	19	83	6	55	43	0	4	52	1.20
57075531--57075581	25	2.0	25	96	0	93	25	25	21	27	1.99
57075830--57075854	3	8.3	3	100	0	50	32	0	0	68	0.90
57081302--57081342	21	2.0	21	85	9	57	29	26	0	43	1.55
57083775--57083825	26	2.0	26	84	7	68	5	23	0	70	1.09
57083854--57083917	7	8.6	7	77	16	58	53	0	1	45	1.10
57083851--57083914	8	8.4	8	78	13	64	51	0	1	46	1.10
57102378--57102487	44	2.5	44	89	2	159	38	24	17	20	1.93
57103488--57103520	17	2.0	17	88	5	50	33	6	0	60	1.21
57109414--57109466	27	2.0	27	81	7	63	28	5	20	45	1.74
57117147--57117204	28	2.1	28	86	0	80	56	10	5	27	1.54
57118206--57118254	18	2.6	19	81	12	57	75	4	0	20	0.96
57118205--57118254	19	2.7	19	78	12	59	74	4	0	22	0.99
57119131--57119191	30	2.0	30	96	0	113	29	13	16	40	1.86
57120400--57120466	26	2.5	27	81	11	84	26	16	32	23	1.96
57129339--57129377	17	2.3	17	86	8	53	46	5	10	38	1.60
57142064--57142109	17	2.8	18	84	15	64	28	41	30	0	1.56
57151223--57151394	75	2.3	75	83	1	220	36	19	18	25	1.94
57151269--57151385	35	3.2	35	70	15	101	36	20	17	24	1.94
57153868--57153927	25	2.4	26	86	8	88	21	31	18	28	1.97
57155078--57155117	21	1.9	21	89	0	62	25	10	17	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57170516--57170620	45	2.3	45	93	3	176	16	23	19	40	1.90
57170516--57170639	45	2.7	43	84	9	151	17	22	16	42	1.89
57173977--57174073	39	2.5	38	86	1	131	47	8	6	38	1.59
57175094--57175274	90	2.0	90	94	0	317	38	12	17	32	1.87
57178776--57178819	21	2.1	21	100	0	88	38	9	13	38	1.77
57178775--57178830	21	2.8	19	87	10	85	37	8	16	37	1.80
57178788--57178853	23	3.0	23	82	12	77	37	6	16	39	1.74
57178819--57178863	23	2.0	23	86	4	65	33	4	15	46	1.66
57179029--57179067	19	2.0	21	85	10	55	15	10	5	69	1.34
57179276--57179317	9	5.0	9	77	16	54	30	0	2	66	1.04
57179288--57179341	15	3.4	15	80	12	63	31	0	3	64	1.11
57179276--57179341	33	2.0	33	88	5	98	31	0	3	65	1.08
57179275--57179331	24	2.4	24	82	8	73	31	0	1	66	1.02
57179567--57179598	17	1.9	16	93	6	55	28	0	6	65	1.16
57179665--57179702	10	3.9	10	86	3	51	34	2	0	63	1.09
57180094--57180135	19	2.2	20	82	4	50	30	7	11	50	1.66
57189456--57189537	40	2.1	39	84	6	103	43	28	17	10	1.82
57190596--57190629	18	1.9	18	88	5	52	38	14	0	47	1.45
57191380--57191546	33	5.1	33	74	1	129	17	19	14	47	1.82
57191380--57191545	65	2.5	66	79	3	165	18	19	14	47	1.82
57196773--57196850	15	5.2	15	70	11	70	42	7	23	26	1.81
57196767--57196860	30	3.1	30	95	1	161	41	6	25	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57197485--57197577	30	3.1	30	95	1	159	26	24	6	41	1.79
57197494--57197571	15	5.2	15	70	11	70	26	23	7	42	1.81
57199195--57199472	139	2.0	138	95	1	504	32	25	7	34	1.84
57199735--57199781	14	3.5	14	94	5	80	38	27	10	23	1.88
57202502--57202559	22	2.6	22	81	7	64	41	17	5	36	1.72
57204195--57204252	15	3.9	15	68	19	50	41	0	3	55	1.17
57215778--57215834	30	1.9	30	85	0	78	24	21	33	21	1.97
57216860--57216913	6	8.7	6	82	12	56	79	0	18	1	0.82
57216861--57216913	18	2.9	18	85	2	70	79	0	18	1	0.83
57216867--57216920	25	2.2	25	86	3	74	79	0	14	5	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230