genome.fa.s19.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  162  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48024404--48024518	23	5.0	23	93	2	187	20	20	20	39	1.93
48027278--48027320	21	2.0	21	81	4	50	39	6	18	34	1.78
48031043--48031092	3	16.7	3	83	8	66	38	0	2	60	1.09
48032160--48032269	23	5.1	21	83	7	132	18	20	23	37	1.94
48036521--48036745	86	2.6	86	90	3	337	36	11	23	28	1.90
48036521--48036744	115	1.9	115	90	1	351	36	11	23	28	1.90
48036521--48036747	57	3.9	58	90	1	341	37	11	23	28	1.89
48036521--48036744	29	7.8	29	89	2	335	36	11	23	28	1.90
48041848--48041872	10	2.5	10	100	0	50	28	8	0	64	1.22
48042174--48042217	23	1.9	22	82	17	54	36	25	0	38	1.56
48042361--48042496	50	2.7	52	85	5	197	31	27	15	25	1.96
48044229--48044256	13	2.2	13	100	0	56	14	35	17	32	1.90
48048660--48048699	9	4.4	9	87	0	62	42	20	10	27	1.83
48048802--48048845	18	2.4	18	88	0	61	13	2	43	40	1.57
48066721--48066892	40	4.3	40	88	2	222	25	27	21	25	1.99
48066723--48066945	40	5.6	39	83	5	216	25	27	21	25	1.99
48066721--48066945	80	2.8	79	80	7	240	25	27	21	25	1.99
48066877--48066954	40	1.9	41	82	10	97	26	28	20	24	1.99
48069305--48069350	14	3.2	15	75	9	51	65	8	0	26	1.21
48073632--48073822	50	3.8	50	80	7	190	28	27	17	26	1.97
48089166--48089257	31	3.0	30	82	9	96	41	7	15	35	1.75
48092936--48092978	21	2.1	21	83	12	54	41	6	0	51	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48093310--48093484	93	1.9	93	85	0	242	36	21	14	28	1.92
48093534--48093731	20	10.6	19	68	21	98	59	1	7	32	1.32
48093533--48093588	10	5.4	10	79	14	53	60	0	5	33	1.19
48093533--48093601	30	2.2	32	87	5	106	60	0	5	33	1.20
48093585--48093636	17	3.0	17	72	25	54	63	1	9	25	1.35
48093672--48093725	10	5.4	10	75	20	51	57	1	3	37	1.27
48099237--48099265	10	2.7	11	89	10	51	79	0	20	0	0.74
48099237--48099268	16	1.9	17	93	6	57	78	0	21	0	0.76
48102455--48102556	43	2.4	43	84	0	132	34	8	11	45	1.72
48102495--48102612	56	2.2	56	81	4	134	33	7	13	44	1.72
48102554--48102676	43	2.9	43	82	0	156	30	10	11	47	1.73
48102450--48102655	99	2.1	99	92	0	340	33	8	12	45	1.73
48102974--48103058	9	8.8	9	73	23	66	40	1	1	57	1.14
48103069--48103165	10	9.7	10	72	12	56	32	1	1	64	1.07
48103110--48103157	10	4.6	11	85	12	66	41	0	0	58	0.98
48102971--48103167	20	10.1	19	75	17	120	37	1	1	59	1.16
48110278--48110650	185	2.0	184	94	0	656	24	20	13	40	1.89
48110933--48110994	32	1.9	32	93	0	106	30	27	12	29	1.93
48111211--48111316	53	2.0	53	90	0	167	27	26	12	33	1.92
48111336--48111709	202	1.9	202	97	0	703	27	27	14	31	1.95
48116558--48116796	51	4.7	51	78	2	248	37	17	8	35	1.81
48123627--48123686	30	2.0	30	96	0	111	56	15	3	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48123797--48123829	12	2.6	13	90	9	59	30	6	33	30	1.82
48131216--48131240	12	2.1	12	100	0	50	8	16	36	40	1.77
48137511--48137538	12	2.3	12	100	0	56	75	0	0	25	0.81
48138169--48138230	31	2.0	31	100	0	124	41	16	9	32	1.80
48146056--48146183	51	2.5	51	84	1	159	27	18	26	27	1.98
48149787--48149921	40	3.4	40	82	2	155	41	28	17	13	1.86
48149797--48149915	39	3.0	39	86	1	148	38	28	17	15	1.90
48150851--48150875	10	2.5	10	100	0	50	24	0	8	68	1.16
48169155--48169212	30	1.9	30	100	0	116	34	13	15	36	1.87
48174958--48174986	14	2.0	15	93	6	51	17	20	0	62	1.33
48176241--48176277	13	3.2	12	85	14	51	51	0	2	45	1.15
48180676--48180706	16	1.9	16	93	0	53	41	9	3	45	1.53
48181660--48181699	20	2.0	19	85	9	53	72	0	5	22	1.04
48181897--48181941	20	2.3	20	88	3	74	77	4	11	6	1.09
48191471--48191507	19	1.9	19	94	0	65	48	0	21	29	1.50
48192637--48192669	15	2.2	15	94	0	57	39	9	15	36	1.79
48194062--48194098	19	1.9	19	94	0	65	51	0	18	29	1.47
48206998--48207097	42	2.4	42	93	3	166	54	7	11	28	1.61
48207021--48207111	42	2.1	42	84	6	112	60	5	6	27	1.44
48209324--48209357	17	2.0	17	100	0	68	29	29	11	29	1.92
48211624--48211850	120	1.9	121	84	4	307	40	28	2	28	1.68
48211860--48211892	14	2.3	15	94	5	59	36	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48212293--48212401	41	2.7	41	88	1	166	31	24	21	22	1.98
48217844--48217898	21	2.6	21	82	0	65	27	3	30	38	1.74
48219984--48220052	35	2.0	35	88	5	104	31	7	17	43	1.76
48221882--48221928	10	4.5	10	78	17	51	65	14	8	10	1.45
48225910--48225947	18	2.1	18	100	0	76	36	21	18	23	1.95
48228812--48228837	13	2.0	13	100	0	52	38	23	7	30	1.83
48236235--48236330	45	2.2	44	88	5	140	30	4	28	37	1.76
48236470--48237104	120	5.3	120	92	1	1028	51	5	1	42	1.33
48236730--48236884	18	9.0	17	65	22	74	53	3	0	42	1.21
48236968--48237005	18	2.2	17	90	4	58	63	0	2	34	1.09
48236990--48237171	102	1.8	102	90	3	298	48	5	2	42	1.40
48241878--48242198	47	6.7	47	91	3	484	33	8	29	28	1.86
48241878--48242198	96	3.4	96	88	6	501	33	8	29	28	1.86
48241878--48242198	143	2.3	142	87	5	479	33	8	29	28	1.86
48244693--48244734	6	7.2	6	91	5	50	66	19	9	4	1.38
48244701--48244734	17	2.0	17	88	0	50	70	17	5	5	1.28
48244795--48244822	14	2.0	14	100	0	56	64	0	28	7	1.20
48253396--48253430	16	2.1	17	89	5	54	45	0	11	42	1.40
48254788--48254882	50	1.9	50	88	0	145	30	29	16	23	1.96
48256474--48256864	50	7.8	50	86	2	525	20	31	21	26	1.98
48260103--48260296	50	3.9	50	86	0	262	22	29	21	26	1.99
48260808--48262215	737	1.9	733	84	5	1876	35	18	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48264735--48264932	48	4.1	48	85	0	243	22	27	21	28	1.99
48267929--48268010	42	2.0	42	82	4	103	30	24	13	31	1.93
48270289--48270486	48	4.1	48	86	0	243	22	27	21	28	1.99
48271706--48271878	41	4.2	41	80	5	197	34	13	28	23	1.93
48271755--48271820	20	3.2	20	69	12	62	33	10	36	19	1.86
48280442--48280629	41	4.6	41	90	0	268	24	23	19	32	1.98
48284312--48284341	15	2.0	15	100	0	60	33	20	0	46	1.51
48288095--48288286	41	4.7	41	88	2	278	23	24	20	31	1.98
48288328--48288378	19	2.6	20	71	3	50	33	21	0	45	1.52
48306345--48306567	40	5.6	40	86	3	236	24	21	27	26	1.99
48306420--48306602	79	2.3	80	82	1	226	25	20	27	25	1.99
48310969--48311027	20	3.0	19	80	9	66	52	3	1	42	1.28
48310995--48311026	5	6.2	5	96	3	55	56	0	0	43	0.99
48311006--48311120	58	1.9	57	82	6	140	41	3	3	51	1.36
48314073--48314498	114	3.7	114	79	5	468	30	19	23	26	1.98
48314289--48314686	188	2.1	188	94	0	688	31	18	23	26	1.97
48314471--48314821	113	3.1	112	79	8	415	30	19	23	26	1.98
48314843--48314892	17	3.0	17	94	2	84	34	0	16	50	1.45
48314933--48315008	7	10.9	7	74	5	64	17	1	35	46	1.56
48317587--48317968	26	15.2	26	87	6	531	46	20	0	31	1.56
48317587--48317703	18	6.2	18	65	27	64	45	18	1	34	1.60
48317740--48317870	19	7.5	19	62	26	65	48	20	0	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48317687--48317968	77	3.7	76	95	1	492	47	20	0	31	1.54
48317960--48318013	9	5.7	10	79	20	55	42	20	0	37	1.52
48317934--48317999	18	3.6	18	84	10	89	46	18	0	34	1.49
48317849--48318013	18	9.5	18	66	30	69	45	20	0	33	1.52
48323464--48323533	21	3.3	21	79	0	77	34	18	44	2	1.65
48323758--48323791	14	2.4	14	95	0	59	17	8	20	52	1.71
48323858--48324189	42	7.9	42	87	1	198	28	21	20	30	1.98
48323860--48324185	126	2.6	125	86	1	357	27	21	20	29	1.98
48323947--48324233	42	6.9	41	89	2	412	23	21	21	33	1.98
48323860--48324233	84	4.5	82	84	4	433	27	20	20	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230