Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  213  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63295327--63295365
12
3.1
12
85
10
51
30
46
0
23
1.53
63295481--63295524
21
2.1
21
87
4
63
45
25
0
29
1.54
63295539--63295563
13
1.9
13
100
0
50
64
0
0
36
0.94
63295659--63295737
41
1.9
41
89
0
122
34
24
20
21
1.97
63295681--63296589
114
8.0
114
86
1
1184
25
25
23
26
2.00
63295689--63296589
455
2.0
455
86
2
1272
24
25
23
26
2.00
63300386--63300453
23
3.0
23
88
0
100
23
27
4
44
1.72
63304861--63304928
23
3.0
23
88
0
100
23
27
4
44
1.72
63307934--63307967
17
2.0
17
88
11
52
35
0
0
64
0.94
63313195--63313224
15
2.0
15
100
0
60
20
13
26
40
1.89
63314716--63314748
16
2.0
17
88
5
50
42
33
6
18
1.75
63317749--63317775
7
3.9
7
100
0
54
44
0
0
55
0.99
63319163--63319195
16
2.0
17
94
5
59
90
0
9
0
0.44
63324682--63324723
16
2.6
17
85
7
52
54
0
0
45
0.99
63324661--63324733
26
2.9
25
72
8
67
43
0
0
56
0.99
63324659--63324779
61
2.0
61
90
0
188
42
0
0
55
1.11
63332731--63332760
13
2.2
13
94
5
51
36
0
0
63
0.95
63336191--63336278
10
8.3
11
68
21
55
60
1
5
32
1.28
63336193--63336279
15
5.5
15
75
10
68
60
1
5
32
1.27
63336218--63336278
31
2.0
30
84
12
79
60
1
3
34
1.23
63336982--63337010
12
2.5
12
94
5
51
79
0
10
10
0.94
63338248--63338698
48
9.6
46
67
18
200
43
18
12
24
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63338200--63338574
70
5.3
70
87
3
538
43
19
12
24
1.86
63338465--63338749
95
3.0
94
87
6
373
44
16
12
25
1.83
63338200--63338570
141
2.6
140
93
1
625
43
19
12
24
1.86
63338404--63338749
165
2.1
165
89
2
534
44
17
13
25
1.85
63338544--63338598
25
2.2
25
93
0
92
43
16
9
30
1.79
63338220--63338747
23
22.5
22
73
12
313
43
17
13
25
1.85
63338225--63338739
70
7.3
69
82
7
399
44
18
12
24
1.85
63341501--63341539
18
2.2
18
85
0
51
61
2
23
12
1.43
63344270--63344367
28
3.5
27
83
5
115
29
26
12
31
1.92
63351389--63351435
21
2.2
22
77
11
53
34
4
2
59
1.29
63352350--63352392
20
2.0
21
86
8
61
30
4
20
44
1.72
63353860--63354055
39
5.0
39
82
2
207
22
35
6
35
1.80
63354847--63355190
177
1.9
177
91
2
557
19
34
11
34
1.88
63357099--63357123
13
1.9
13
100
0
50
8
16
20
56
1.65
63361965--63361992
14
2.0
14
100
0
56
21
7
35
35
1.81
63376771--63376833
22
3.2
19
80
12
65
65
17
6
11
1.45
63377237--63377261
6
4.2
6
100
0
50
48
0
0
52
1.00
63392714--63392774
24
2.5
23
80
15
61
49
4
0
45
1.23
63392722--63392801
35
2.3
35
85
8
103
50
5
0
45
1.23
63393231--63393300
35
2.0
35
91
0
113
51
1
8
38
1.41
63396796--63397352
189
2.9
189
87
0
799
33
12
34
19
1.89
63398023--63398219
39
5.0
39
84
0
241
34
7
36
22
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63401710--63401823
10
12.3
9
70
19
51
63
2
2
31
1.22
63401719--63401751
16
2.0
17
88
5
50
57
3
0
39
1.14
63401879--63401923
21
2.1
21
84
8
56
66
0
4
28
1.11
63402485--63402546
30
2.1
30
81
6
72
9
37
1
51
1.45
63404857--63404891
16
2.2
16
90
10
54
20
0
22
57
1.41
63409535--63409633
49
2.0
49
98
0
189
36
28
16
19
1.93
63410221--63410723
120
4.2
120
97
0
918
50
5
1
42
1.36
63410324--63410370
16
3.0
16
78
12
53
51
2
0
46
1.13
63410444--63410490
16
3.0
16
78
12
53
51
2
0
46
1.13
63410564--63410610
16
3.0
16
78
12
53
51
2
0
46
1.13
63412640--63412701
3
20.7
3
83
6
81
62
1
4
30
1.25
63414574--63414717
44
3.2
45
66
7
132
23
20
21
34
1.96
63414621--63414758
44
3.2
43
67
8
134
25
23
21
28
1.99
63414497--63414794
88
3.4
88
89
2
415
24
21
23
30
1.99
63414652--63414790
44
3.2
44
66
8
120
23
20
25
29
1.99
63416998--63417053
18
3.1
19
76
7
53
10
10
7
71
1.31
63422081--63422148
3
22.7
3
85
5
93
63
1
4
30
1.23
63423911--63423962
25
2.1
25
96
0
95
44
15
25
15
1.85
63424063--63424330
136
2.0
138
90
3
425
47
14
13
25
1.81
63426526--63426568
12
3.4
12
82
14
52
34
48
13
2
1.56
63427194--63427240
20
2.2
22
85
11
62
48
0
21
29
1.50
63427544--63427617
30
2.6
27
77
10
76
10
20
10
58
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63429211--63429248
1
38.0
1
100
0
76
0
0
0
100
0.00
63429513--63429541
3
9.7
3
100
0
58
31
0
34
34
1.58
63442710--63442761
25
2.1
25
92
0
86
44
0
13
42
1.44
63445926--63445959
14
2.3
15
95
5
61
73
8
11
5
1.24
63446969--63447310
88
3.9
88
87
3
392
24
22
23
29
1.99
63447088--63447308
44
5.0
45
65
8
139
24
21
22
31
1.98
63447081--63447308
88
2.6
88
95
2
406
24
21
23
30
1.99
63449530--63449563
16
2.1
17
88
5
52
5
8
5
79
1.05
63454558--63454624
3
22.7
3
82
8
84
62
1
4
31
1.24
63456382--63456433
25
2.1
25
96
0
95
44
15
25
15
1.85
63456535--63456803
137
2.0
138
90
2
434
47
14
13
24
1.80
63459005--63459047
12
3.4
12
82
14
52
34
48
13
2
1.56
63459679--63459725
20
2.2
22
85
11
62
48
0
21
29
1.50
63460030--63460103
30
2.6
27
77
10
76
10
20
10
58
1.62
63462195--63462223
3
9.7
3
100
0
58
31
0
34
34
1.58
63464239--63464278
21
2.0
21
86
13
59
47
5
5
42
1.47
63466065--63466103
12
3.2
12
85
0
51
17
20
7
53
1.68
63466064--63466102
20
2.0
20
100
0
78
15
20
7
56
1.63
63466357--63466497
50
2.8
50
81
0
156
22
29
20
27
1.99
63468129--63468209
29
2.8
30
80
16
82
62
1
6
29
1.27
63472493--63472543
3
17.0
3
100
0
102
0
33
0
66
0.92
63490329--63490393
17
3.8
16
75
15
58
63
3
3
30
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63490305--63490393
19
4.9
17
70
20
56
64
3
2
30
1.22
63490432--63490515
33
2.7
31
82
12
109
57
8
4
29
1.49
63496761--63496799
20
2.1
18
85
9
51
46
5
7
41
1.55
63500903--63501198
102
2.9
102
85
1
380
30
26
15
28
1.96
63500754--63501198
51
8.8
51
74
7
291
31
26
15
26
1.96
63500909--63501194
153
1.9
151
80
10
332
31
26
14
27
1.95
63514962--63515021
30
2.0
31
86
3
86
40
0
40
20
1.52
63521698--63521728
14
2.2
14
94
0
53
19
16
25
38
1.92
63521694--63521735
14
2.7
16
78
17
52
21
14
23
40
1.90
63526344--63526377
9
3.4
10
88
12
52
64
8
0
26
1.22
63526395--63526435
10
4.3
10
81
12
59
68
9
0
21
1.18
63526541--63526599
29
2.1
27
81
12
66
67
0
5
27
1.11
63526549--63526590
20
2.0
21
86
13
61
66
0
7
26
1.17
63527461--63527497
13
2.8
14
84
12
51
16
27
0
56
1.40
63536329--63536386
30
2.0
30
82
3
73
50
0
3
46
1.18
63538433--63538468
17
2.1
17
100
0
72
16
25
33
25
1.96
63538450--63538924
188
2.5
187
88
3
684
35
11
34
18
1.87
63539591--63539787
39
5.0
39
84
0
223
35
6
35
22
1.81
63545374--63545427
19
2.8
18
81
10
63
59
0
5
35
1.21
63545374--63545416
20
2.2
20
87
8
61
62
0
6
30
1.21
63546025--63546060
18
2.0
18
89
10
56
55
25
11
8
1.62
63549884--63549923
21
2.1
18
86
13
53
47
5
7
40
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63550868--63550934
29
2.3
29
80
15
75
55
0
7
37
1.28
63550879--63550942
30
2.1
30
82
5
76
56
1
6
35
1.34
63552145--63552194
26
1.9
26
83
0
64
62
4
0
34
1.14
63552143--63552247
10
11.4
10
67
18
50
63
3
1
30
1.22
63552701--63552917
72
3.0
72
97
0
398
27
23
23
26
2.00
63553074--63553155
39
2.1
39
86
0
110
30
25
13
30
1.94
63553091--63553177
39
2.2
40
81
6
106
29
27
17
25
1.97
63567036--63567221
72
2.5
74
77
13
213
41
16
9
32
1.80
63582372--63582426
23
2.4
22
80
19
60
29
1
1
67
1.11
63587220--63587307
43
2.0
43
95
0
158
42
10
22
25
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230