genome.fa.s19.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  134  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39062498--39062531	15	2.2	16	89	5	52	38	0	0	61	0.96
39065116--39065163	24	2.0	24	100	0	96	54	4	8	33	1.50
39066360--39066384	12	2.1	12	100	0	50	68	0	8	24	1.16
39068664--39068696	17	2.0	17	88	5	50	45	0	0	54	0.99
39068658--39068856	68	3.2	57	69	22	141	40	5	4	50	1.43
39080827--39080889	29	2.2	29	91	0	99	36	12	26	23	1.91
39080893--39080951	30	2.0	30	86	0	82	40	13	27	18	1.88
39082378--39082421	23	1.9	23	82	17	56	22	0	20	56	1.42
39084291--39084330	8	4.9	8	84	3	53	80	2	0	17	0.83
39088104--39088146	21	2.0	21	86	8	61	58	4	9	27	1.49
39088846--39088884	10	4.0	10	86	6	62	64	10	0	25	1.25
39092236--39092394	79	2.0	79	97	0	300	28	15	12	43	1.83
39094392--39094433	19	2.2	19	83	8	50	42	4	7	45	1.52
39099334--39099365	12	2.7	12	90	0	55	6	46	18	28	1.73
39112643--39112700	23	2.5	23	86	5	73	39	6	20	32	1.79
39112730--39112873	23	6.4	22	80	12	141	36	0	21	41	1.58
39112564--39112791	114	2.0	115	87	2	334	32	4	22	39	1.75
39112734--39112868	46	2.9	46	84	6	175	36	0	22	40	1.59
39112972--39113028	23	2.5	23	73	0	60	22	1	35	40	1.65
39113912--39113942	5	6.4	5	92	7	55	19	0	0	80	0.71
39117144--39117176	15	2.1	16	88	5	50	54	0	24	21	1.45
39117134--39117185	20	2.6	20	90	6	79	51	0	25	23	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39118867--39119043	39	4.5	39	82	5	162	24	20	27	26	1.99
39118820--39119041	40	5.6	39	81	7	189	24	21	27	26	1.99
39118873--39119041	79	2.1	79	82	2	196	24	21	27	26	1.99
39118900--39119076	79	2.3	79	80	1	194	24	22	28	24	1.99
39122654--39122759	20	5.3	20	71	8	90	28	17	34	18	1.94
39122651--39122776	40	3.2	40	81	0	153	31	17	33	17	1.93
39122742--39122820	40	2.0	40	82	5	97	34	12	30	22	1.92
39137497--39137676	51	3.5	51	78	5	159	22	17	28	31	1.96
39137690--39137778	45	2.0	45	95	0	160	24	17	24	32	1.97
39140771--39141080	41	7.5	41	85	1	350	33	14	28	23	1.94
39141070--39141112	21	2.0	21	100	0	86	27	4	23	44	1.73
39142337--39142417	27	3.0	27	85	0	108	39	22	14	23	1.91
39142643--39142737	26	3.7	26	77	2	93	16	16	22	44	1.87
39142643--39142758	52	2.2	52	90	3	189	16	18	22	43	1.88
39142675--39142760	26	3.3	26	81	0	100	16	20	22	40	1.91
39142876--39142962	30	2.9	29	82	3	111	19	26	24	29	1.98
39142876--39142962	29	2.9	29	84	3	111	19	26	24	29	1.98
39149517--39149612	21	4.7	20	66	19	63	33	16	31	18	1.94
39149411--39149612	41	4.9	41	83	0	233	33	16	29	20	1.94
39154263--39154299	8	4.6	8	96	0	65	62	21	16	0	1.33
39157946--39158006	16	3.8	16	76	6	61	60	11	18	9	1.57
39157944--39158013	16	4.4	16	75	5	52	64	10	15	10	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39160033--39160075	18	2.4	18	81	14	61	46	4	9	39	1.57
39160513--39160610	27	3.5	28	88	5	128	25	13	28	32	1.93
39160541--39160624	27	3.0	27	87	5	96	29	11	25	33	1.91
39163657--39163699	21	2.0	21	90	0	68	60	4	6	27	1.43
39164636--39164913	40	6.9	40	85	1	317	15	12	25	46	1.81
39164630--39164913	120	2.4	120	83	1	354	15	12	25	47	1.80
39165457--39165493	16	2.3	16	100	0	74	62	5	18	13	1.50
39171769--39172007	50	4.6	50	82	3	253	27	22	28	21	1.99
39171769--39171997	100	2.2	103	84	6	295	27	23	27	21	1.99
39178579--39178822	50	4.7	50	85	3	299	25	23	28	21	1.99
39178578--39178823	100	2.4	104	86	5	338	26	23	28	21	1.99
39200266--39200487	39	5.7	40	84	8	248	25	21	27	25	1.99
39200317--39200520	79	2.6	79	83	8	204	26	21	27	25	1.99
39208235--39208417	40	4.6	41	81	12	206	25	22	26	25	2.00
39208235--39208417	79	2.3	81	82	11	220	25	22	26	25	2.00
39208236--39208451	79	2.7	79	78	13	191	26	21	26	24	1.99
39230197--39230224	13	2.2	13	100	0	56	25	39	7	28	1.82
39247011--39247036	13	2.0	13	100	0	52	30	0	30	38	1.58
39259468--39259512	22	2.0	22	87	8	65	26	2	20	51	1.59
39263402--39263482	40	2.0	41	85	2	110	44	25	16	13	1.84
39272265--39272291	14	1.9	14	100	0	54	59	3	0	37	1.15
39272424--39272479	29	1.9	29	85	7	78	51	14	7	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39283342--39283588	50	4.8	50	85	3	287	25	22	29	21	1.99
39286644--39286719	36	2.1	36	97	0	143	27	15	7	48	1.73
39286680--39286836	59	2.7	59	100	0	314	29	17	7	45	1.75
39287218--39287326	53	2.1	53	98	0	209	48	13	5	32	1.66
39287454--39287569	50	2.3	50	83	3	142	36	14	16	32	1.89
39299155--39299302	74	2.0	74	93	0	251	46	22	6	25	1.74
39301924--39302164	50	4.7	50	78	5	209	27	21	26	24	1.99
39305240--39305281	14	2.8	15	85	7	50	7	16	0	76	1.00
39308273--39308420	74	2.0	74	91	0	242	47	21	6	23	1.74
39317781--39317842	27	2.2	28	88	8	92	56	17	0	25	1.41
39317890--39317992	51	2.0	51	81	5	120	40	2	14	41	1.61
39318244--39318285	18	2.4	17	81	18	50	35	2	2	59	1.23
39340006--39340062	27	2.1	27	93	3	98	49	21	14	15	1.80
39343060--39343135	34	2.2	34	95	0	134	43	13	7	35	1.73
39345066--39345119	6	9.0	6	83	0	72	5	18	0	75	0.98
39345039--39345117	18	4.4	17	80	3	86	7	20	3	68	1.30
39347575--39347639	33	2.0	33	96	0	121	43	15	7	33	1.75
39356975--39357126	27	5.6	27	93	3	241	26	13	28	30	1.94
39356975--39357126	55	2.8	55	94	0	259	26	13	28	30	1.94
39369301--39369333	17	1.9	17	88	11	50	39	0	12	48	1.40
39384263--39384308	22	2.1	22	83	0	56	36	0	17	45	1.49
39385584--39385645	30	2.1	30	100	0	124	66	3	12	17	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39385769--39385824	29	1.9	29	85	7	78	50	7	16	26	1.70
39395476--39395505	15	1.9	16	93	6	53	13	20	0	66	1.24
39398713--39398770	23	2.5	22	83	10	64	55	6	0	37	1.27
39404376--39404634	39	6.6	40	84	6	298	27	28	20	24	1.99
39412022--39412285	40	6.6	40	90	2	361	26	28	20	24	1.99
39415130--39415168	16	2.4	16	91	0	60	53	30	2	12	1.52
39416637--39416677	21	2.0	21	95	0	73	31	21	12	34	1.91
39418483--39418520	19	2.0	20	89	5	60	44	15	2	36	1.61
39430294--39430502	39	5.4	39	85	6	248	26	29	18	25	1.98
39430294--39430502	75	2.7	75	87	6	276	26	29	18	25	1.98
39430481--39430558	40	1.9	41	82	10	97	26	28	21	23	1.99
39438211--39438420	40	5.3	40	91	0	305	26	29	20	24	1.99
39438211--39438473	120	2.2	119	82	4	316	26	28	20	24	1.99
39438214--39438473	80	3.3	80	85	4	260	25	28	20	24	1.99
39438405--39438482	40	1.9	41	82	10	97	26	28	21	23	1.99
39441519--39441561	19	2.3	18	88	8	59	39	2	0	58	1.11
39461611--39461656	20	2.3	20	84	0	56	36	15	19	28	1.92
39461619--39461664	20	2.3	20	88	0	74	30	13	23	32	1.93
39469460--39469608	41	3.6	41	93	0	244	31	19	24	24	1.98
39469583--39469633	26	2.0	26	92	0	84	23	19	31	25	1.98
39474279--39474414	61	2.3	58	81	12	154	39	2	5	51	1.41
39475868--39475953	9	9.4	9	80	7	84	41	25	8	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39488162--39488201	18	2.3	18	91	4	64	35	5	32	27	1.79
39488168--39488212	18	2.5	18	85	0	54	33	4	33	28	1.77
39499413--39499466	20	2.7	20	97	0	99	20	22	3	53	1.61
39513243--39513284	7	5.6	7	86	13	57	78	0	4	16	0.91
39513243--39513284	16	2.8	16	92	7	70	78	0	4	16	0.91
39513792--39513834	17	2.4	18	76	11	52	69	2	4	23	1.18
39518656--39518735	34	2.4	34	91	4	128	23	30	11	35	1.90
39527049--39527113	21	3.0	21	70	12	60	53	3	1	41	1.25
39527130--39527180	20	2.7	19	81	6	59	56	3	0	39	1.18
39527121--39527223	50	2.0	49	87	7	143	59	2	0	37	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230