Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  146  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43037432--43037700
46
5.6
46
84
10
340
28
22
14
34
1.93
43037475--43037694
52
4.3
52
85
8
299
27
22
14
35
1.93
43037432--43037700
98
2.7
98
93
0
457
28
22
14
34
1.93
43048567--43048605
18
2.2
17
86
13
53
33
0
20
46
1.51
43048831--43048952
23
5.3
23
85
0
172
22
20
25
31
1.98
43048831--43048945
46
2.5
46
94
0
203
21
21
25
31
1.98
43050683--43050934
42
6.0
42
76
3
202
29
25
17
28
1.97
43051716--43051753
16
2.5
15
91
8
67
60
0
0
39
0.97
43051786--43051825
20
2.0
21
85
5
55
60
5
0
35
1.19
43051793--43051871
26
2.8
28
81
12
92
55
1
0
43
1.07
43060603--43060637
17
2.1
17
94
0
61
85
0
14
0
0.59
43060607--43060635
13
2.2
13
100
0
58
86
0
13
0
0.58
43060707--43060752
20
2.3
20
92
0
74
28
13
28
30
1.94
43061564--43061692
7
18.1
7
74
9
73
42
35
0
20
1.58
43061565--43061776
14
14.9
14
70
11
81
44
31
1
22
1.62
43061565--43061760
43
4.4
43
73
11
112
43
31
1
23
1.63
43061645--43061713
22
3.2
22
83
4
86
47
31
0
20
1.50
43061737--43061781
7
6.4
7
81
0
54
51
26
0
22
1.49
43061594--43061776
21
8.6
21
73
10
102
45
30
1
22
1.62
43061594--43061781
14
13.2
14
72
9
94
46
29
1
22
1.62
43061980--43062013
14
2.4
14
90
0
50
50
35
0
14
1.44
43062310--43062546
41
5.8
41
75
5
201
31
26
18
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43062586--43062662
40
1.9
39
86
2
109
25
20
15
37
1.92
43082260--43082306
19
2.5
19
100
0
94
19
42
4
34
1.70
43089633--43089739
56
1.9
56
86
3
153
25
21
13
40
1.89
43090363--43090417
20
2.8
20
88
0
83
29
16
29
25
1.97
43092641--43092687
20
2.3
20
85
0
67
21
12
36
29
1.91
43099155--43099260
48
2.2
47
83
12
128
15
24
1
58
1.47
43100271--43100306
10
3.8
9
89
10
54
2
8
2
86
0.77
43100262--43100325
22
3.0
21
81
6
67
4
14
3
78
1.04
43101851--43101897
20
2.3
20
85
0
67
21
12
36
29
1.91
43106539--43106585
20
2.3
20
81
0
58
29
34
12
23
1.92
43115639--43115735
30
3.2
30
75
2
106
28
26
15
28
1.96
43117449--43117498
11
4.7
11
80
7
59
80
4
10
6
1.02
43117447--43117499
21
2.5
21
87
0
70
77
5
9
7
1.12
43118424--43118484
16
3.9
16
77
12
56
77
1
18
3
0.99
43118424--43118487
6
10.8
6
76
17
55
76
1
18
3
1.00
43118424--43118487
21
3.0
21
81
4
74
76
1
18
3
1.00
43118414--43118486
37
2.0
37
86
10
105
75
2
19
2
1.05
43118533--43118563
12
2.6
12
94
0
53
48
9
16
25
1.76
43120731--43120827
30
3.2
30
75
2
106
28
26
15
28
1.96
43123275--43123299
6
4.2
6
100
0
50
16
0
16
68
1.22
43130813--43130837
13
1.9
13
100
0
50
36
16
32
16
1.90
43134022--43134055
13
2.6
13
95
0
59
8
2
5
82
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43134115--43134148
12
2.7
13
95
4
61
5
2
5
85
0.83
43136662--43136686
6
4.2
6
100
0
50
16
0
16
68
1.22
43141511--43141557
20
2.3
20
92
0
76
25
34
17
23
1.96
43141522--43141559
10
3.8
10
83
13
51
28
28
15
26
1.96
43143775--43143962
45
4.2
45
95
0
322
38
15
20
25
1.92
43144755--43144802
20
2.3
20
85
7
60
60
2
10
27
1.41
43148583--43148632
13
4.0
12
82
7
64
74
2
12
12
1.17
43149694--43149735
18
2.3
18
87
0
57
71
4
16
7
1.26
43154227--43154277
25
2.0
26
85
11
70
43
31
1
23
1.65
43154476--43154522
17
2.8
17
80
9
60
12
10
4
72
1.25
43155296--43155393
45
2.2
45
86
0
133
24
19
14
41
1.88
43163812--43163952
45
3.1
45
98
0
273
25
21
14
37
1.92
43166881--43166922
14
2.9
14
85
3
57
73
0
21
4
1.01
43172324--43172376
14
3.6
14
85
12
70
56
5
13
24
1.58
43172340--43172376
17
2.2
17
95
0
65
59
5
10
24
1.52
43174813--43174854
13
3.4
13
90
6
61
76
2
4
16
1.07
43174895--43174919
13
1.9
13
100
0
50
84
0
16
0
0.63
43174892--43174968
32
2.5
30
81
12
84
75
2
10
11
1.15
43174899--43174969
29
2.4
29
88
2
97
77
2
9
9
1.09
43175926--43175963
18
2.1
18
90
9
60
55
0
23
21
1.44
43183728--43183766
14
2.7
15
84
7
55
33
10
7
48
1.66
43190304--43190328
12
2.1
12
100
0
50
16
0
8
76
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43191364--43191410
20
2.3
20
85
0
67
29
36
12
21
1.91
43193331--43193378
20
2.4
20
67
0
51
33
18
27
20
1.96
43202276--43202314
17
2.3
16
86
8
51
10
7
2
79
1.02
43204920--43204950
4
7.8
4
92
0
53
22
3
0
74
0.96
43213115--43213143
10
2.7
11
89
10
51
86
6
6
0
0.72
43214130--43214270
6
23.3
6
67
8
72
70
2
18
7
1.23
43214131--43214270
18
7.7
18
71
10
97
70
2
18
7
1.24
43214285--43214347
33
1.9
33
84
12
85
53
6
26
12
1.62
43225418--43225448
12
2.6
12
100
0
62
25
16
12
45
1.83
43225498--43225568
37
1.9
37
85
5
99
4
16
2
76
1.07
43225496--43225558
16
4.0
16
72
10
58
4
17
1
76
1.04
43226486--43226526
10
3.7
11
84
15
50
4
7
2
85
0.81
43232068--43232114
23
2.1
23
84
7
62
51
12
4
31
1.59
43237295--43237323
12
2.5
12
94
5
51
82
6
0
10
0.83
43237335--43237392
24
2.3
25
82
5
64
75
6
10
6
1.17
43239789--43239823
18
1.9
18
88
11
54
57
0
20
22
1.41
43245047--43245091
12
3.8
12
91
5
74
17
2
6
73
1.15
43245050--43245094
11
4.0
11
91
2
72
17
2
8
71
1.23
43246084--43246130
23
2.1
23
84
7
62
51
12
4
31
1.59
43253838--43253873
16
2.3
16
90
4
56
77
2
11
8
1.08
43273204--43273254
23
2.3
21
78
18
50
9
23
1
64
1.34
43273248--43273286
18
2.2
18
85
0
51
12
23
2
61
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43277006--43277056
23
2.3
21
78
18
50
9
23
1
64
1.34
43277050--43277088
18
2.2
18
85
0
51
12
23
2
61
1.43
43285943--43286019
30
2.6
30
77
4
84
29
25
16
27
1.97
43295983--43296026
22
2.0
22
95
0
79
25
36
4
34
1.76
43302872--43302924
23
2.4
22
76
20
56
9
18
1
69
1.25
43309939--43309991
23
2.4
22
76
20
56
9
18
1
69
1.25
43317677--43317711
18
1.9
18
88
11
54
22
20
0
57
1.41
43318646--43318680
11
3.3
11
92
4
54
14
2
8
74
1.17
43318759--43318787
10
2.7
11
94
5
51
6
3
6
82
0.93
43320519--43320565
20
2.3
20
81
0
58
29
34
14
21
1.93
43322114--43322153
11
3.8
10
81
12
53
85
2
10
2
0.80
43322098--43322159
22
2.7
22
82
12
72
77
3
14
4
1.06
43324981--43325027
20
2.3
20
75
13
51
27
34
12
25
1.92
43328415--43328443
15
1.9
15
100
0
58
72
6
6
13
1.26
43330671--43330724
23
2.2
25
78
15
60
62
3
22
11
1.43
43337794--43337844
11
3.8
13
80
20
52
74
1
11
11
1.15
43337812--43337842
11
2.7
11
95
5
53
77
0
9
12
0.99
43340058--43340107
15
2.9
17
77
17
50
74
2
14
10
1.16
43347544--43347583
14
2.9
13
88
7
53
10
35
7
47
1.65
43358666--43358720
20
2.8
20
85
0
74
25
27
18
29
1.98
43360720--43360760
11
3.6
11
96
3
73
75
7
2
14
1.12
43363276--43363330
20
2.8
20
85
0
74
23
29
18
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43365725--43365760
14
2.6
14
95
0
63
41
2
36
19
1.66
43366785--43366838
20
2.7
20
82
0
63
24
20
18
37
1.94
43366785--43366858
30
2.5
30
86
8
98
21
20
18
39
1.93
43366785--43366849
20
3.2
20
71
16
53
23
21
16
38
1.93
43369546--43369570
13
1.9
13
100
0
50
64
8
0
28
1.22
43369795--43369850
21
2.7
21
86
2
69
37
19
25
17
1.94
43371809--43371850
11
3.8
11
87
6
59
76
2
7
14
1.10
43372756--43372822
26
2.6
27
76
11
68
74
5
17
1
1.09
43372870--43372900
12
2.6
12
100
0
62
45
12
16
25
1.83
43381619--43381663
14
3.3
14
84
6
65
48
13
0
37
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230