genome.fa.s19.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  142  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41726125--41726609	47	10.3	47	93	0	799	32	9	29	29	1.88
41726732--41726806	37	2.0	37	87	5	107	21	21	30	26	1.98
41750394--41750446	15	3.5	16	76	16	51	16	43	0	39	1.49
41759542--41759664	51	2.4	51	82	2	140	23	17	28	30	1.97
41759494--41759681	102	1.9	101	84	3	252	24	17	28	29	1.97
41759899--41759930	16	2.0	16	100	0	64	62	0	12	25	1.30
41760291--41760315	11	2.3	11	100	0	50	36	0	44	20	1.52
41761466--41761585	59	2.0	60	95	1	215	36	2	12	48	1.55
41761774--41761818	22	2.0	23	83	12	58	57	0	4	37	1.19
41764628--41764677	25	2.0	25	84	0	64	36	20	18	26	1.95
41764503--41766134	125	13.1	125	94	0	2834	35	19	18	26	1.95
41764878--41764927	25	2.0	25	84	0	64	36	20	18	26	1.95
41765128--41765177	25	2.0	25	84	0	64	36	20	18	26	1.95
41767738--41767780	3	14.3	3	95	0	77	30	0	2	67	1.03
41768414--41768809	109	3.6	110	93	2	638	31	16	19	33	1.94
41769779--41769836	23	2.5	23	78	15	57	56	1	1	39	1.19
41771127--41771224	32	3.2	32	68	13	82	35	14	4	45	1.64
41771111--41771250	63	2.3	59	81	10	165	35	17	6	41	1.75
41771751--41771780	15	1.9	16	93	6	53	40	0	3	56	1.16
41772490--41772627	27	5.1	27	74	6	109	42	7	23	26	1.82
41775150--41775242	49	1.9	48	88	2	141	38	17	15	29	1.90
41778303--41779008	353	2.0	353	99	0	1385	27	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41780255--41780345	45	2.0	44	82	2	110	27	28	4	39	1.76
41780395--41780447	24	2.1	26	86	10	74	41	0	5	52	1.25
41782648--41782693	20	2.2	21	85	11	60	41	23	10	23	1.86
41782724--41782869	27	5.4	27	90	3	224	33	15	18	32	1.92
41789912--41789975	34	1.9	32	90	6	101	21	23	23	31	1.99
41790256--41790321	27	2.4	27	89	0	105	36	12	18	33	1.88
41818853--41818895	15	2.7	17	79	17	56	11	2	4	81	0.93
41820143--41820173	14	2.2	14	100	0	62	29	12	29	29	1.94
41825515--41825891	43	8.8	42	89	2	506	29	32	18	19	1.95
41828752--41828890	16	9.0	16	69	15	71	29	2	20	47	1.64
41828740--41828831	25	3.7	25	80	2	87	32	2	18	46	1.61
41828748--41829111	9	43.3	9	66	21	141	31	2	20	45	1.64
41828752--41828916	41	4.0	41	80	3	163	29	3	20	47	1.64
41828820--41828875	25	2.2	25	90	0	85	30	3	21	44	1.69
41828828--41828918	25	3.7	25	73	15	75	27	3	20	48	1.65
41828994--41829076	16	4.9	16	76	13	76	36	0	22	40	1.55
41829200--41829324	37	3.5	36	75	17	127	41	3	9	45	1.53
41829251--41829457	94	2.2	94	83	5	258	41	5	7	45	1.56
41829379--41829546	20	8.6	20	71	13	127	41	5	5	47	1.51
41829345--41829535	57	3.3	57	88	1	265	41	5	6	46	1.53
41831380--41831428	18	2.7	18	77	22	50	57	4	8	30	1.47
41834938--41835115	28	6.4	28	88	2	225	25	14	28	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41837092--41837509	228	1.8	228	80	5	504	26	20	23	30	1.98
41839592--41839690	38	2.7	38	84	12	118	59	4	7	29	1.42
41842448--41842477	15	2.0	15	93	0	51	43	20	6	30	1.77
41855736--41855811	29	2.6	29	82	4	89	48	14	11	25	1.77
41858739--41858771	14	2.3	15	90	10	52	48	3	0	48	1.17
41865850--41865893	22	2.0	22	100	0	88	13	31	18	36	1.90
41865855--41865902	22	2.2	22	88	0	69	16	39	14	29	1.88
41867036--41867202	26	6.3	26	81	2	172	29	27	12	30	1.93
41867036--41867202	52	3.2	52	84	1	199	29	27	12	30	1.93
41871540--41871594	21	2.6	21	83	8	67	25	32	20	21	1.97
41874628--41874761	57	2.4	57	83	3	155	29	23	19	27	1.98
41874626--41874723	28	3.5	28	74	9	92	29	24	20	25	1.99
41874626--41874761	29	4.8	27	72	14	78	29	23	19	27	1.98
41893074--41893296	26	8.5	26	81	3	259	28	26	10	34	1.89
41893655--41893923	26	10.3	25	81	6	252	28	26	11	34	1.90
41892765--41893871	575	1.9	576	86	2	1591	29	23	12	34	1.92
41893672--41893923	78	3.2	77	83	4	301	28	26	11	34	1.90
41900195--41900234	20	1.9	21	85	10	55	25	2	12	60	1.45
41903360--41903537	27	6.6	27	84	3	205	29	28	15	26	1.96
41903381--41903536	82	1.9	81	88	3	233	29	28	15	26	1.96
41904015--41904040	12	2.2	12	100	0	52	42	0	7	50	1.31
41911452--41911629	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41911473--41911628	82	1.9	81	88	3	233	29	28	15	26	1.96
41912105--41912130	12	2.2	12	100	0	52	42	0	7	50	1.31
41914289--41914344	26	2.2	26	90	0	85	28	21	26	23	1.99
41921614--41921654	21	2.0	20	90	4	64	9	19	29	41	1.83
41921638--41921791	43	3.6	43	89	3	229	27	30	18	23	1.98
41921994--41922061	35	2.0	35	82	8	86	55	2	1	39	1.24
41922183--41922248	19	3.3	19	66	25	55	57	19	4	18	1.57
41922171--41922248	41	1.9	41	100	0	156	56	19	7	16	1.64
41923268--41923507	68	3.5	68	98	0	462	46	18	12	22	1.83
41925851--41925892	21	2.0	22	85	4	59	38	33	0	28	1.58
41925943--41926015	33	2.2	33	82	4	85	31	41	5	21	1.76
41925888--41926096	115	1.8	116	81	11	268	43	26	2	27	1.69
41927388--41927623	41	5.8	41	90	0	357	28	27	24	19	1.99
41927664--41927796	40	3.4	38	80	8	133	21	22	20	36	1.96
41930278--41930339	30	2.1	30	96	0	115	43	25	3	27	1.70
41937234--41937260	5	5.4	5	100	0	54	18	0	0	81	0.69
41938672--41938732	20	3.0	20	81	9	79	8	26	19	45	1.78
41942474--41942498	5	5.0	5	100	0	50	80	0	0	20	0.72
41945536--41945571	16	2.2	16	90	0	54	22	0	2	75	0.94
41946099--41946131	16	2.0	17	88	5	50	69	3	0	27	1.03
41960136--41960166	16	1.9	16	93	0	53	48	0	9	41	1.36
41969631--41969670	19	2.1	19	86	9	55	32	2	5	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41977753--41977828	26	2.9	26	80	0	89	36	9	19	34	1.84
41980401--41980475	20	3.7	19	75	7	60	44	25	21	9	1.82
41982771--41982824	26	2.0	27	82	3	65	11	11	1	75	1.11
41985174--41985230	22	2.5	24	80	13	66	43	0	7	49	1.29
41985187--41985236	24	2.1	24	85	14	68	52	0	6	42	1.26
41985456--41985489	18	1.9	18	94	5	61	38	32	0	29	1.58
41993006--41993213	46	4.5	46	79	3	177	27	20	20	31	1.97
41997316--41997385	28	2.6	27	81	4	88	35	24	12	27	1.92
41997278--41997414	54	2.5	55	81	9	156	37	21	13	27	1.91
41998978--41999038	21	3.0	20	75	22	56	50	6	0	42	1.28
42000394--42000515	45	2.7	45	77	13	126	27	30	18	22	1.98
42000355--42000687	44	7.6	45	70	11	174	29	26	17	26	1.98
42000241--42000713	218	2.2	216	87	2	606	29	26	17	26	1.97
42002180--42002259	6	12.8	6	78	12	54	11	8	11	68	1.39
42005956--42006085	62	2.1	63	82	4	156	31	11	7	49	1.67
42007210--42007269	16	3.9	15	76	12	50	73	3	0	23	0.98
42010335--42010372	19	2.1	19	85	5	51	55	10	2	31	1.48
42021203--42021300	27	3.5	28	86	5	119	33	28	13	24	1.93
42021202--42021300	28	3.5	28	86	5	112	33	29	13	24	1.93
42029433--42029530	27	3.5	28	86	5	119	33	28	13	24	1.93
42029432--42029530	28	3.5	28	86	5	112	33	29	13	24	1.93
42033224--42033283	29	2.1	29	81	3	68	48	11	6	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42039358--42039427	28	2.5	29	74	6	72	32	24	25	17	1.96
42041773--42041862	43	2.1	43	97	0	171	27	13	30	28	1.94
42044837--42044868	15	2.1	15	94	0	55	68	9	6	15	1.36
42046730--42046844	27	4.3	27	76	8	117	43	18	15	22	1.87
42049791--42049833	22	2.0	22	90	0	68	53	9	25	11	1.67
42061415--42061521	23	4.9	23	82	10	125	35	22	21	20	1.96
42063716--42063812	32	2.9	33	74	10	99	51	9	19	19	1.73
42064257--42064298	21	2.0	21	81	9	50	54	0	2	42	1.13
42066029--42066078	24	2.0	24	85	11	66	12	8	6	74	1.22
42071130--42071164	9	3.9	9	88	0	52	68	0	20	11	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230