genome.fa.s19.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  224  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66290558--66291992	44	33.6	43	68	13	409	28	15	26	29	1.96
66290788--66292162	255	5.4	255	98	0	2599	28	16	26	28	1.97
66292098--66292448	46	7.8	46	64	15	142	26	20	23	29	1.99
66292104--66292517	134	3.1	134	93	0	702	27	19	22	29	1.98
66292419--66292612	95	2.0	95	94	2	336	31	19	20	28	1.97
66292965--66293671	177	4.0	177	95	0	1234	28	16	24	29	1.97
66293446--66293537	45	2.3	38	74	24	105	29	18	23	28	1.98
66292684--66293678	132	7.5	132	86	3	1106	28	16	25	29	1.97
66295440--66295530	3	30.3	3	76	8	78	29	7	2	60	1.36
66295446--66295530	12	6.8	12	81	7	89	30	8	2	58	1.40
66299642--66299700	28	2.1	28	81	15	68	37	5	13	44	1.66
66301903--66301936	14	2.5	14	85	4	52	5	11	11	70	1.32
66321773--66321840	35	2.0	35	97	2	129	20	11	50	17	1.77
66322423--66322619	76	2.7	76	85	12	270	32	20	17	29	1.95
66322819--66323007	68	2.7	67	82	13	231	35	17	15	30	1.91
66322473--66323102	189	3.3	189	86	7	870	36	20	14	28	1.92
66322957--66323057	50	2.0	49	81	11	116	42	18	11	26	1.85
66328500--66328530	15	2.0	16	93	6	55	41	6	25	25	1.79
66329988--66330037	24	2.1	25	88	7	77	56	8	6	30	1.52
66330135--66330166	4	7.8	4	93	6	55	75	0	0	25	0.81
66331634--66331672	20	1.9	21	94	5	71	64	0	2	33	1.08
66332294--66332382	35	2.5	35	87	5	115	31	7	1	59	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66332407--66332473	19	3.3	20	75	14	66	32	1	1	64	1.12
66332422--66332472	10	5.3	10	74	9	52	29	0	1	68	1.00
66332422--66332491	9	7.4	9	73	19	54	28	0	5	65	1.15
66333256--66333320	32	2.0	32	96	0	121	66	13	6	13	1.43
66334464--66334498	16	2.3	15	90	5	52	62	2	2	31	1.24
66334639--66334681	20	2.1	21	82	4	52	62	6	2	27	1.33
66334811--66334853	23	2.0	23	86	9	63	51	6	13	27	1.67
66334817--66334866	23	2.2	23	82	13	59	54	10	12	24	1.67
66335420--66335444	13	1.9	13	100	0	50	88	0	0	12	0.53
66335410--66335466	29	1.9	30	82	10	73	77	0	12	10	1.00
66335681--66335734	24	2.2	24	87	6	74	3	3	22	70	1.19
66335692--66335750	24	2.5	24	91	2	93	5	3	18	72	1.17
66347571--66347626	15	3.9	15	75	6	55	37	1	0	60	1.07
66347565--66347626	21	2.9	21	80	4	70	33	1	0	64	1.03
66353710--66353851	37	3.8	37	80	5	135	23	15	26	35	1.94
66373380--66373418	16	2.4	16	100	0	78	58	10	5	25	1.51
66380392--66380440	23	2.1	23	96	0	89	51	22	20	6	1.69
66380982--66381034	26	2.0	26	96	0	97	35	37	0	26	1.57
66381621--66381854	69	3.4	68	85	3	299	36	13	23	27	1.92
66388190--66388366	64	2.8	64	87	10	249	31	8	17	42	1.79
66388486--66388643	41	3.9	41	83	5	176	20	18	27	33	1.96
66389308--66389342	15	2.3	15	90	9	54	25	0	22	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66395084--66395260	64	2.8	64	87	10	249	31	8	17	42	1.79
66395380--66395537	41	3.9	41	83	5	176	20	17	27	34	1.95
66396206--66396240	15	2.3	15	90	9	54	25	0	22	51	1.48
66398014--66398057	22	2.0	22	100	0	88	40	22	22	13	1.89
66399049--66399093	12	3.6	12	85	11	63	86	11	0	2	0.65
66399050--66399093	13	3.4	13	84	12	63	88	9	0	2	0.59
66399051--66399093	18	2.3	19	84	4	61	88	9	0	2	0.60
66399483--66399523	19	2.2	19	91	4	66	78	4	14	2	1.03
66399469--66399537	10	6.9	9	80	19	59	81	4	13	1	0.91
66399825--66400112	97	3.0	97	93	0	477	27	16	7	47	1.75
66400776--66400811	16	2.3	16	90	4	56	38	19	8	33	1.82
66401022--66401358	46	7.4	46	92	0	552	23	16	29	30	1.96
66401441--66401719	99	2.8	100	81	6	323	31	21	21	26	1.98
66401711--66401979	132	2.0	132	82	2	326	33	18	21	26	1.97
66405236--66405261	13	2.0	13	100	0	52	46	0	7	46	1.31
66409116--66409140	13	1.9	13	100	0	50	44	0	0	56	0.99
66412979--66413041	29	2.2	29	85	0	81	52	3	1	42	1.27
66413274--66413313	20	2.0	21	85	5	55	57	0	0	42	0.98
66419676--66419716	21	2.0	21	90	0	64	19	29	21	29	1.98
66425126--66425158	15	2.2	15	100	0	66	45	36	0	18	1.49
66428902--66428934	16	2.0	17	88	5	50	51	12	6	30	1.63
66429141--66429165	13	1.9	13	100	0	50	56	0	12	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66430488--66430531	22	2.0	22	100	0	88	31	0	22	45	1.53
66430680--66430706	5	5.4	5	100	0	54	59	0	0	40	0.98
66430729--66430801	5	14.8	5	98	1	139	41	0	0	58	0.98
66431798--66431854	22	2.6	23	80	8	73	12	24	19	43	1.85
66433494--66433537	22	2.0	22	82	8	54	63	0	6	29	1.20
66438062--66438102	21	2.0	21	81	18	50	21	26	19	31	1.97
66459232--66459391	27	5.9	26	91	5	223	18	20	36	24	1.94
66459232--66459391	81	2.0	81	91	2	259	18	20	36	24	1.94
66459458--66459502	22	2.1	21	87	4	63	64	2	31	2	1.18
66459450--66459505	24	2.3	24	82	11	62	66	1	30	1	1.12
66462824--66462867	6	7.3	6	86	0	61	2	31	31	34	1.70
66462824--66462870	24	2.0	24	91	0	76	2	31	34	31	1.70
66464572--66464653	38	2.2	38	95	0	146	40	2	3	53	1.32
66464849--66465351	19	26.2	19	64	24	136	53	12	1	32	1.47
66464849--66465215	27	15.1	26	75	20	293	52	13	1	32	1.50
66464796--66465215	49	8.7	49	77	13	392	52	13	1	32	1.50
66464802--66465183	115	3.2	119	86	6	504	52	14	1	31	1.51
66465191--66465349	21	7.7	21	71	15	100	55	12	0	31	1.37
66465274--66465351	20	3.8	20	81	8	86	55	11	0	33	1.36
66465164--66465420	122	2.1	123	80	11	287	54	11	0	33	1.42
66465518--66465554	14	2.5	14	91	8	56	0	40	0	59	0.97
66465516--66465557	14	3.2	13	83	12	50	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66465712--66465737	13	2.0	13	100	0	52	15	23	15	46	1.83
66465760--66465794	16	2.1	17	89	5	54	42	0	0	57	0.99
66470652--66470726	18	4.2	18	85	0	105	32	16	22	29	1.95
66473827--66473868	15	2.9	15	80	16	52	40	0	2	57	1.12
66474420--66474461	20	2.1	20	86	8	59	59	4	4	30	1.39
66475871--66475914	23	1.9	23	81	9	54	54	0	2	43	1.12
66476482--66476533	24	2.2	24	89	0	77	55	9	1	32	1.43
66478453--66478504	24	2.2	24	85	0	68	53	11	1	32	1.48
66480926--66480968	16	2.6	16	85	10	52	37	2	4	55	1.33
66482059--66482136	40	2.0	40	82	7	97	32	5	19	43	1.73
66489249--66489295	21	2.2	21	81	7	51	61	10	0	27	1.29
66497735--66497847	41	2.8	41	95	0	199	23	20	29	27	1.99
66507899--66507963	28	2.4	28	89	2	96	49	1	12	36	1.50
66509342--66509386	22	2.0	22	95	0	81	57	11	20	11	1.63
66509437--66509472	11	3.3	11	100	0	72	33	8	11	47	1.69
66509409--66509693	83	3.3	83	64	15	218	44	17	9	28	1.79
66509514--66509556	22	2.0	22	100	0	86	65	11	13	9	1.48
66509284--66509709	175	2.4	175	98	0	807	46	16	10	26	1.78
66509612--66509646	11	3.2	11	100	0	70	34	8	11	45	1.71
66533651--66533705	27	2.0	27	96	0	101	27	9	23	40	1.85
66550206--66550250	20	2.2	20	88	0	63	22	28	42	6	1.79
66550297--66550325	12	2.5	12	94	5	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66563036--66563101	31	2.1	31	91	0	105	30	6	10	53	1.60
66564675--66564728	23	2.4	23	80	19	69	35	0	0	64	0.94
66572419--66572449	11	2.8	11	95	0	53	19	48	3	29	1.64
66575442--66575493	21	2.5	21	90	0	77	50	5	38	5	1.51
66594327--66594377	13	3.9	13	77	10	59	37	0	1	60	1.08
66602535--66602587	16	3.5	16	75	19	60	52	0	0	47	1.00
66602512--66602589	29	2.5	32	84	16	101	52	0	1	46	1.08
66608424--66608497	29	2.5	31	86	4	98	22	10	14	51	1.74
66609319--66609348	7	4.3	7	100	0	60	30	13	30	26	1.94
66610454--66610488	17	2.1	17	89	5	54	37	0	5	57	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230