genome.fa.s19.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  144  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42462193--42462253	32	2.0	30	90	6	95	14	6	40	37	1.72
42462200--42462252	16	3.3	16	74	10	54	16	3	41	37	1.67
42462606--42462808	44	4.7	43	77	8	216	29	20	19	30	1.97
42462908--42463083	45	3.9	45	92	0	280	28	25	18	27	1.98
42471532--42471562	9	3.4	9	95	0	53	51	3	22	22	1.62
42475368--42475396	9	3.3	9	95	4	51	68	10	0	20	1.18
42475843--42475905	3	20.0	3	76	12	56	66	3	1	28	1.16
42475844--42475907	15	4.1	15	80	13	67	68	3	1	26	1.13
42475835--42475905	12	5.9	12	73	20	51	67	2	1	28	1.13
42478447--42478526	17	4.8	16	70	13	54	67	2	0	30	1.04
42478444--42478533	8	11.2	8	69	20	55	68	2	0	28	1.01
42478448--42478533	25	3.5	24	75	12	68	68	2	0	29	1.02
42480056--42480418	124	2.9	124	90	1	541	30	14	21	33	1.93
42486226--42486274	20	2.4	20	79	3	53	24	20	4	51	1.65
42489088--42489144	29	1.9	30	82	10	73	0	26	7	66	1.17
42490476--42490505	3	10.0	3	100	0	60	66	0	0	33	0.92
42494872--42495014	65	2.2	65	81	2	153	26	17	20	35	1.95
42495069--42495120	26	2.0	26	84	0	68	23	19	19	38	1.93
42510087--42510144	26	2.2	26	87	0	80	27	17	15	39	1.90
42510193--42510249	26	2.2	26	84	6	71	15	17	24	42	1.88
42515046--42515195	44	3.4	44	71	9	126	36	9	18	36	1.83
42517750--42517847	37	2.6	36	74	20	92	28	19	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42520464--42520531	34	2.0	34	100	0	136	44	14	17	23	1.86
42521691--42521728	13	3.0	13	84	3	51	39	21	0	39	1.53
42524839--42524930	47	2.0	46	89	2	139	35	21	10	31	1.88
42524976--42525016	20	2.0	21	90	4	66	36	12	0	51	1.40
42526347--42526395	21	2.3	20	80	16	55	30	16	20	32	1.94
42533548--42533646	53	1.9	52	80	12	114	32	4	3	60	1.30
42533696--42533763	10	6.6	10	74	15	50	33	4	2	58	1.33
42533717--42533755	10	3.8	10	86	6	51	30	2	2	64	1.21
42540879--42540917	19	2.1	19	90	0	60	38	0	17	43	1.50
42540958--42540996	18	2.2	18	90	0	60	41	2	7	48	1.45
42542569--42542614	16	2.9	16	81	12	58	19	4	4	71	1.20
42547941--42547988	24	2.0	24	100	0	96	37	0	12	50	1.41
42547950--42548001	24	2.2	24	82	0	59	42	3	9	44	1.55
42554432--42554491	19	3.1	19	82	2	66	31	3	3	61	1.28
42557309--42557358	24	2.0	25	85	11	68	60	0	10	30	1.30
42557384--42557426	22	2.0	22	86	4	61	72	0	11	16	1.13
42557835--42557880	6	7.5	6	90	4	74	17	2	0	80	0.81
42557828--42557880	18	2.9	19	86	8	83	16	3	0	79	0.88
42559029--42559061	16	2.1	16	94	0	57	12	0	9	78	0.95
42559002--42559059	24	2.5	23	88	5	82	13	3	8	74	1.19
42564517--42564610	47	2.0	48	85	6	129	32	28	15	22	1.95
42567633--42567657	9	2.8	9	100	0	50	56	0	12	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42585882--42585925	20	2.2	20	85	14	65	52	31	4	11	1.57
42588607--42588653	24	2.0	24	86	0	67	38	23	2	36	1.67
42589009--42589062	26	2.1	26	100	0	108	46	11	14	27	1.79
42590336--42590373	19	2.0	19	100	0	76	52	10	0	36	1.36
42594083--42594560	47	10.1	47	92	1	785	32	9	29	28	1.89
42594083--42594560	143	3.4	143	94	0	816	32	9	29	28	1.89
42594679--42594757	37	2.1	37	90	0	122	24	18	31	25	1.98
42596918--42596950	16	2.1	16	100	0	66	36	6	36	21	1.78
42597162--42597695	119	4.5	120	93	2	880	49	5	2	42	1.40
42597259--42597684	54	7.2	57	65	23	186	49	5	2	42	1.40
42597541--42597575	18	2.0	17	88	5	52	54	0	0	45	0.99
42599936--42600069	46	3.3	38	81	16	171	54	11	29	4	1.55
42603683--42603711	13	2.2	13	100	0	58	34	13	0	51	1.42
42612072--42612138	25	2.7	25	83	0	80	32	16	25	25	1.96
42612249--42612319	26	2.8	26	82	2	90	36	22	23	16	1.94
42631429--42631506	31	2.5	31	85	2	95	33	3	10	52	1.53
42640897--42640923	11	2.5	11	100	0	54	22	7	18	51	1.70
42642323--42642516	92	2.1	92	88	5	286	44	4	4	46	1.41
42642494--42642592	52	2.0	52	80	11	118	45	6	2	46	1.39
42642549--42642582	17	2.0	17	94	0	59	44	5	0	50	1.26
42642554--42642601	17	3.0	16	79	17	55	45	6	2	45	1.40
42642642--42642676	18	2.0	17	88	5	52	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42642589--42642821	129	1.8	129	94	1	414	42	2	6	49	1.39
42642771--42642805	18	2.0	17	88	5	52	45	0	0	54	0.99
42642771--42642812	17	2.5	17	85	14	52	45	0	0	54	0.99
42642759--42643029	143	1.9	147	93	4	478	46	2	3	46	1.34
42642914--42642948	18	2.0	17	88	5	52	45	0	0	54	0.99
42643110--42643204	45	2.1	45	88	1	138	32	27	5	34	1.79
42643183--42643215	16	2.1	16	94	0	57	30	36	0	33	1.58
42643196--42643238	21	2.0	21	95	0	77	34	37	0	27	1.57
42646581--42646708	25	5.0	25	88	2	166	42	9	16	31	1.80
42646623--42646727	25	4.2	24	90	4	104	40	4	19	35	1.72
42659854--42659920	27	2.3	29	92	7	111	41	14	8	34	1.78
42667149--42667207	29	2.0	29	96	0	109	32	13	18	35	1.90
42677419--42677488	27	2.4	29	76	9	72	31	14	8	45	1.75
42684822--42684914	18	5.2	18	88	0	141	27	23	16	32	1.96
42695998--42696051	28	1.9	28	82	14	67	59	0	0	40	0.98
42695985--42696051	21	3.1	21	80	4	71	55	0	1	43	1.09
42740087--42740311	80	2.8	79	81	4	247	24	21	28	25	1.99
42740087--42740309	40	5.6	39	82	7	216	25	21	27	25	1.99
42740167--42740344	79	2.2	80	80	3	191	25	21	28	24	1.99
42744896--42745132	33	6.8	33	72	19	153	21	19	27	31	1.98
42744789--42745019	102	2.3	102	91	0	372	20	18	28	32	1.96
42744919--42745130	76	2.8	75	91	0	334	22	19	27	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42751132--42751169	19	2.0	19	85	10	51	21	42	0	36	1.53
42756064--42756102	17	2.3	17	86	8	53	41	0	17	41	1.50
42756696--42756751	20	2.8	20	77	0	67	10	30	17	41	1.84
42758287--42758334	15	3.3	14	80	8	51	52	12	0	35	1.40
42763469--42763644	50	3.5	49	73	6	147	21	17	25	36	1.94
42763465--42763736	100	2.8	100	79	5	265	22	18	25	33	1.96
42763788--42764175	44	8.5	44	65	19	141	28	20	18	32	1.96
42763812--42764239	142	3.0	142	93	1	718	27	20	17	34	1.95
42764146--42764268	44	2.8	44	79	7	142	29	21	18	30	1.97
42764357--42764590	130	1.8	130	88	0	360	24	23	22	29	1.99
42766625--42766669	6	7.5	6	92	0	63	17	0	13	68	1.20
42774474--42774817	27	12.8	27	79	7	360	43	16	14	25	1.86
42775042--42775109	26	2.6	26	80	0	91	17	17	25	39	1.91
42775223--42775298	30	2.6	29	87	4	100	22	27	21	28	1.99
42775223--42775311	30	3.0	30	78	3	92	22	25	20	31	1.98
42780934--42781278	27	12.8	27	77	8	301	42	19	15	23	1.89
42780934--42781278	81	4.3	80	80	5	399	42	19	15	23	1.89
42780934--42781278	54	6.4	54	77	6	351	42	19	15	23	1.89
42781488--42781542	26	2.1	26	86	0	74	21	21	21	34	1.97
42781637--42781720	30	2.9	29	85	3	98	22	22	20	34	1.97
42781666--42781744	30	2.6	30	81	0	86	22	24	22	30	1.99
42785783--42785822	19	2.0	21	85	9	57	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42785817--42785858	12	3.7	12	75	12	52	30	0	0	69	0.89
42785823--42785868	10	4.4	10	84	10	56	30	0	0	69	0.89
42792021--42792135	46	2.5	46	92	0	194	41	24	18	15	1.89
42792339--42792581	27	9.0	27	79	6	226	23	15	17	44	1.86
42798145--42798175	16	2.0	15	93	6	53	38	32	16	12	1.86
42798143--42798235	38	2.4	38	83	3	125	39	30	17	12	1.87
42798204--42798245	22	1.9	22	95	0	75	42	33	14	9	1.78
42798204--42798257	22	2.5	22	87	0	72	44	29	14	11	1.80
42798166--42798278	60	1.9	60	87	3	165	43	26	16	13	1.85
42801505--42801549	23	2.0	23	81	0	54	62	4	4	28	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230