genome.fa.s19.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  135  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39527419--39527449	15	2.1	15	100	0	62	38	6	41	12	1.69
39532020--39532177	49	3.2	48	90	2	246	31	7	30	30	1.85
39532295--39532373	37	2.1	37	90	0	122	21	18	32	26	1.97
39536110--39536399	49	5.8	49	80	9	250	22	24	21	31	1.98
39536110--39536399	99	2.9	99	77	9	250	22	24	21	31	1.98
39543682--39543969	50	5.8	50	81	2	294	22	27	22	27	1.99
39543731--39543969	99	2.4	100	84	2	302	22	28	22	27	1.99
39543689--39543959	149	1.8	148	83	4	357	21	27	22	28	1.99
39550230--39550364	50	2.8	48	78	8	132	22	23	20	32	1.98
39554470--39554531	31	2.1	30	82	17	76	46	8	16	29	1.75
39554744--39554957	107	2.0	107	94	0	374	22	14	23	39	1.91
39558417--39558713	50	5.8	50	83	3	310	26	21	28	23	1.99
39560296--39560332	19	1.9	19	88	0	56	8	32	0	59	1.27
39562936--39562975	20	2.0	20	90	0	62	20	15	12	52	1.74
39563278--39563405	52	2.5	52	89	3	188	27	30	14	28	1.95
39569875--39569932	28	2.1	28	96	0	107	20	37	20	20	1.94
39572275--39572403	52	2.5	52	86	3	163	27	29	15	27	1.96
39574434--39574531	40	2.5	40	98	0	187	34	15	34	15	1.89
39574434--39574531	20	4.9	20	70	18	87	34	15	34	15	1.89
39576977--39577127	60	2.5	61	76	5	155	25	20	15	37	1.93
39578652--39578807	79	2.0	78	88	1	231	28	23	14	33	1.94
39586935--39586999	20	3.2	20	76	8	69	23	23	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39598396--39598578	38	4.8	38	89	2	251	35	30	18	15	1.92
39598445--39598516	22	3.5	22	66	24	59	31	33	19	15	1.93
39604934--39604972	19	2.1	19	100	0	78	30	5	0	64	1.15
39604936--39604972	6	6.0	6	93	6	65	32	2	0	64	1.07
39605373--39605397	13	1.9	13	100	0	50	36	24	0	40	1.55
39611442--39611682	29	8.3	29	66	11	93	38	21	15	25	1.92
39611454--39611642	58	3.3	58	82	3	193	37	19	15	27	1.92
39611480--39611651	58	3.0	58	86	1	229	37	20	15	26	1.92
39623961--39624016	25	2.2	25	96	0	103	41	23	5	30	1.76
39632209--39632264	25	2.2	25	96	0	103	41	23	5	30	1.76
39635514--39635541	5	5.6	5	100	0	56	42	0	0	57	0.99
39641705--39641745	20	2.0	20	100	0	82	26	4	14	53	1.61
39649574--39649754	95	1.9	94	81	1	218	28	27	12	31	1.93
39652843--39652869	14	1.9	14	100	0	54	14	25	22	37	1.93
39672246--39672291	21	2.2	21	85	14	60	50	0	10	39	1.38
39680205--39680240	5	7.2	5	100	0	72	38	0	0	61	0.96
39681054--39681090	18	2.2	18	85	9	51	70	2	5	21	1.20
39684426--39684457	16	2.0	16	93	0	55	37	18	9	34	1.83
39690818--39690887	35	2.0	35	100	0	140	20	2	25	51	1.61
39692404--39692590	51	3.7	49	75	7	187	22	15	28	32	1.95
39692601--39692686	45	1.9	45	92	0	145	25	15	24	34	1.94
39697733--39697799	33	2.0	33	100	0	134	38	11	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39701650--39701691	18	2.3	18	81	18	52	71	4	11	11	1.29
39706779--39707070	29	10.0	29	78	8	254	36	14	28	21	1.92
39706782--39707071	59	5.0	58	76	6	246	36	14	27	21	1.92
39706755--39707071	88	3.6	88	89	3	437	36	13	27	22	1.92
39716695--39716904	39	5.3	39	91	2	307	25	27	21	25	2.00
39716695--39716955	78	3.3	79	83	11	299	25	26	22	25	2.00
39724447--39724656	39	5.3	39	91	2	307	25	27	21	25	2.00
39724447--39724707	78	3.3	79	82	12	292	24	26	22	26	2.00
39727048--39727198	51	3.0	51	85	2	189	35	24	12	27	1.92
39757026--39757223	50	3.8	50	82	4	189	26	22	28	22	1.99
39758672--39758711	20	2.0	20	90	0	62	27	10	12	50	1.72
39758657--39758723	34	1.9	35	90	3	109	31	8	13	46	1.74
39758651--39758727	14	5.0	15	71	20	52	33	9	14	42	1.77
39765241--39765413	50	3.5	50	81	3	172	28	22	27	21	1.99
39765179--39765413	50	4.6	50	78	7	165	28	21	26	23	1.99
39765746--39765779	14	2.3	15	90	5	52	11	17	0	70	1.16
39769425--39769564	48	2.9	48	77	3	122	40	21	16	21	1.91
39771718--39771806	28	3.2	28	88	6	128	26	24	25	22	2.00
39776102--39776127	10	2.6	10	100	0	52	19	11	7	61	1.53
39785886--39785924	20	2.0	20	90	10	62	69	2	23	5	1.21
39785886--39785930	20	2.2	20	84	11	56	66	4	22	6	1.33
39788026--39788350	173	1.9	174	88	0	499	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39788026--39788352	87	3.8	87	88	2	469	28	22	22	26	1.99
39788464--39788563	44	2.3	45	77	8	107	30	17	22	31	1.96
39788514--39788692	44	4.1	43	68	11	114	30	17	21	30	1.97
39788467--39788741	129	2.1	129	90	1	426	29	17	21	31	1.96
39788799--39788958	50	3.2	50	73	3	178	33	24	18	24	1.97
39788770--39789012	100	2.4	100	92	0	387	32	25	18	23	1.97
39788818--39788974	50	3.1	50	73	3	181	32	24	17	24	1.97
39788838--39789026	50	3.8	50	75	2	166	35	24	17	22	1.95
39789271--39789303	12	2.8	12	90	0	57	72	0	0	27	0.85
39789744--39789776	18	1.9	17	88	11	50	75	12	0	12	1.04
39798441--39798470	16	1.9	16	93	6	53	50	20	0	30	1.49
39806718--39806762	23	2.0	23	100	0	90	40	17	8	33	1.81
39818658--39818847	95	2.0	95	97	1	364	33	11	12	43	1.78
39838673--39838770	27	3.6	27	80	0	115	40	30	10	18	1.84
39842810--39842919	54	2.0	54	91	3	177	32	6	13	47	1.68
39846347--39846391	19	2.4	18	85	7	63	53	2	0	44	1.13
39848193--39848261	27	2.5	28	83	6	88	23	2	20	53	1.59
39848229--39848305	35	2.2	36	90	4	129	27	2	16	53	1.57
39849620--39849696	14	5.0	15	72	20	61	41	16	9	32	1.80
39849636--39849675	20	2.0	20	90	0	62	50	12	10	27	1.72
39873961--39874023	20	3.3	20	64	28	55	31	19	7	41	1.80
39873960--39874036	37	2.1	37	95	0	136	29	19	9	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39874051--39874107	26	2.2	26	100	0	114	35	28	3	33	1.74
39877324--39877449	66	1.9	65	88	1	189	44	23	13	19	1.85
39883076--39883109	14	2.3	15	90	5	52	76	2	5	14	1.09
39886928--39887037	41	2.9	36	73	21	116	19	28	22	30	1.98
39888475--39888625	28	5.2	28	84	5	178	27	22	24	25	2.00
39888727--39888800	26	2.8	27	81	6	89	33	25	25	14	1.94
39889039--39889302	27	10.0	27	79	5	207	20	16	20	43	1.88
39889187--39889270	28	3.0	28	82	1	89	21	13	22	42	1.87
39894097--39894397	39	7.6	39	90	5	407	24	27	22	25	2.00
39901973--39902156	79	2.3	80	83	11	229	25	27	22	25	2.00
39901973--39902156	40	4.6	41	82	12	208	25	27	22	25	2.00
39904290--39904347	30	1.9	30	85	0	80	36	6	25	31	1.83
39904688--39904929	50	4.7	50	86	6	317	26	22	28	21	1.99
39904688--39904930	99	2.4	102	86	6	323	26	22	28	22	1.99
39917445--39917730	50	5.6	50	78	3	252	27	20	28	23	1.99
39922674--39922711	19	2.0	19	100	0	76	31	26	10	31	1.90
39928641--39928685	24	1.9	23	86	4	63	17	33	6	42	1.76
39930757--39930794	19	2.0	20	94	5	69	18	34	10	36	1.85
39930759--39930804	20	2.3	19	85	7	56	23	34	10	30	1.89
39933191--39933245	18	3.1	18	78	5	58	76	3	12	7	1.12
39933226--39933288	24	2.5	24	84	7	72	68	3	17	11	1.33
39933227--39933293	12	5.3	12	74	10	53	67	2	17	11	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39933273--39933311	18	2.2	18	90	9	62	64	0	15	20	1.30
39935416--39935453	19	1.9	19	89	5	58	21	31	10	36	1.87
39936373--39936551	51	3.5	51	82	3	184	24	16	28	31	1.96
39936473--39936553	26	3.2	26	62	28	64	22	13	29	34	1.92
39936555--39936649	45	2.1	45	94	0	163	27	20	21	31	1.97
39943819--39943857	5	7.6	5	82	5	51	0	38	0	61	0.96
39944551--39944788	27	8.8	27	88	1	309	42	21	19	16	1.89
39944990--39945037	26	1.9	24	86	4	60	14	22	25	37	1.92
39945146--39945228	28	3.0	28	90	0	130	22	24	21	31	1.98
39945981--39946040	20	3.1	20	66	9	52	28	5	21	45	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230