genome.fa.s19.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  108  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31164168--31164288	48	2.6	46	78	7	127	18	16	19	45	1.86
31169537--31169603	33	2.0	33	91	0	107	40	10	23	25	1.86
31183602--31183672	25	2.8	25	86	0	88	28	19	18	33	1.95
31191542--31191673	40	3.3	40	82	5	149	27	12	25	34	1.93
31191558--31191679	41	3.0	42	83	4	151	26	13	27	32	1.93
31192357--31192508	23	6.5	23	81	6	128	26	14	18	40	1.89
31192384--31192481	24	4.2	23	89	3	101	23	15	17	43	1.87
31194848--31194905	17	3.5	16	73	15	55	70	3	3	22	1.17
31207598--31207622	3	8.3	3	100	0	50	36	32	0	32	1.58
31210680--31210704	11	2.3	11	100	0	50	8	0	24	68	1.16
31211082--31211124	19	2.3	19	84	11	61	32	6	0	60	1.23
31229514--31229698	79	2.3	81	82	7	218	25	26	22	25	2.00
31229514--31229698	40	4.7	40	80	7	216	25	26	22	25	2.00
31233907--31233984	23	3.4	23	78	0	93	34	29	19	16	1.94
31233898--31234039	46	3.1	46	78	2	133	35	26	19	19	1.95
31234011--31234086	23	3.3	23	77	3	62	40	23	18	17	1.91
31235643--31235747	20	5.2	20	72	0	75	37	18	20	23	1.94
31238830--31238881	25	2.1	25	88	0	77	34	17	25	23	1.96
31239546--31239581	13	2.8	13	91	0	63	27	41	0	30	1.56
31254799--31254862	22	2.8	22	79	9	67	29	31	21	17	1.96
31256445--31256496	19	2.7	20	84	6	70	42	17	17	23	1.89
31256445--31256548	20	5.2	20	72	2	75	37	18	21	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31259628--31259679	25	2.1	25	88	0	77	34	17	25	23	1.96
31260345--31260380	13	2.8	13	91	0	63	27	41	0	30	1.56
31283889--31283914	13	2.0	13	100	0	52	23	15	23	38	1.92
31284623--31284670	23	2.0	26	84	12	66	41	8	2	47	1.45
31284622--31284670	24	2.0	26	84	15	68	40	8	2	48	1.44
31296713--31296746	17	2.0	17	94	0	59	5	17	26	50	1.69
31297320--31297359	19	2.0	21	85	9	57	37	10	10	42	1.72
31298054--31298142	44	2.0	44	91	0	142	46	3	8	41	1.52
31299876--31299924	22	2.3	20	89	10	71	40	6	8	44	1.59
31299793--31299924	20	6.6	20	69	10	83	40	6	10	43	1.64
31301092--31301135	22	2.0	22	95	0	79	34	4	36	25	1.76
31302906--31303118	75	2.8	76	92	2	349	31	27	19	22	1.97
31303093--31303170	27	2.9	27	96	0	138	29	30	23	16	1.96
31307320--31307545	30	7.6	30	78	10	239	24	22	13	39	1.90
31307320--31307565	60	4.1	60	82	8	295	24	23	13	38	1.90
31307320--31307565	89	2.7	90	79	10	281	24	23	13	38	1.90
31311472--31311582	51	2.2	52	83	8	147	45	4	20	29	1.71
31313483--31313512	7	4.3	7	91	0	51	70	0	30	0	0.88
31322668--31322749	42	2.0	42	95	0	146	30	4	13	51	1.62
31328917--31328961	22	2.0	22	83	8	56	40	4	0	55	1.20
31337177--31337237	25	2.4	25	81	5	70	39	1	1	57	1.18
31337520--31337544	11	2.3	11	100	0	50	28	28	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31342783--31342835	26	2.0	26	100	0	106	39	11	18	30	1.86
31343559--31343598	21	1.9	21	84	0	53	22	25	20	32	1.98
31358271--31358364	47	2.0	47	95	0	170	25	18	20	36	1.95
31361007--31361061	25	2.2	25	90	0	83	30	14	12	41	1.83
31362385--31362425	17	2.3	19	83	12	59	26	43	19	9	1.82
31365994--31366052	29	2.0	31	83	6	77	32	6	5	55	1.48
31367549--31367732	96	1.9	96	82	4	228	19	15	31	33	1.93
31373277--31373335	20	3.0	20	76	0	64	23	23	15	37	1.93
31378646--31378676	15	2.1	15	93	0	53	51	12	12	22	1.74
31395542--31395688	75	2.0	75	94	0	258	29	12	8	48	1.71
31398915--31398997	41	2.0	41	83	4	105	30	14	21	33	1.93
31401056--31401096	21	2.0	21	90	0	64	39	21	9	29	1.86
31407410--31407693	138	2.1	138	90	1	444	45	6	8	40	1.60
31408406--31408541	67	2.0	67	97	2	256	29	19	10	40	1.85
31410348--31410377	15	1.9	16	93	6	53	60	0	0	40	0.97
31412110--31412151	22	1.9	21	85	9	57	59	4	2	33	1.31
31413817--31414327	175	2.9	175	89	3	751	28	22	18	29	1.98
31413868--31414495	44	14.3	44	70	12	296	28	21	19	30	1.97
31413985--31414541	305	1.8	302	91	3	913	27	22	19	30	1.98
31414117--31414454	128	2.6	129	85	2	444	28	22	19	29	1.98
31414412--31414500	46	1.9	46	88	0	133	26	23	19	30	1.98
31414542--31414887	87	4.0	87	85	1	388	26	24	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31416011--31416057	21	2.2	21	88	0	67	23	38	12	25	1.90
31416140--31416192	7	8.0	7	87	8	76	15	16	0	67	1.23
31416143--31416191	6	7.7	6	86	8	62	14	16	0	69	1.19
31416140--31416191	13	4.0	13	85	9	79	15	17	0	67	1.24
31416140--31416192	20	2.7	20	94	2	90	15	16	0	67	1.23
31416140--31416200	20	3.1	19	81	11	70	16	18	0	65	1.27
31416924--31416954	15	2.0	16	93	6	55	3	12	0	83	0.75
31420771--31420812	22	1.9	21	85	9	57	59	4	2	33	1.31
31422516--31422599	41	2.0	44	90	6	138	50	13	5	30	1.65
31424355--31424453	41	2.4	41	85	5	130	51	7	22	19	1.70
31432359--31432396	16	2.5	16	87	8	53	31	5	18	44	1.72
31434307--31434388	34	2.5	34	83	13	93	34	7	2	56	1.40
31438753--31439122	185	2.0	185	90	0	578	26	21	17	34	1.95
31441714--31441756	19	2.3	19	88	4	61	39	2	4	53	1.34
31442710--31442740	11	2.8	11	95	0	53	70	3	0	25	1.02
31443239--31443312	20	3.8	18	69	20	51	35	4	1	59	1.25
31447592--31447641	21	2.4	21	96	0	91	42	2	50	6	1.38
31449579--31449619	16	2.5	17	76	15	50	48	4	0	46	1.23
31457489--31457587	28	3.5	28	95	4	173	38	13	0	48	1.42
31457626--31457736	27	4.1	27	95	1	188	24	30	27	17	1.97
31458234--31458294	19	3.3	18	76	4	59	42	8	0	49	1.32
31458242--31458294	18	2.9	18	75	11	54	41	9	0	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31458785--31458868	27	3.1	27	89	1	134	16	27	30	25	1.97
31458887--31458914	10	2.8	10	100	0	56	0	0	10	89	0.49
31458919--31459017	28	3.5	28	94	4	164	47	0	14	38	1.44
31462664--31462704	14	3.0	14	89	3	57	63	4	7	24	1.40
31462664--31462704	13	3.0	13	85	7	55	63	4	7	24	1.40
31478941--31478969	6	4.8	6	100	0	58	34	0	13	51	1.42
31486014--31486067	4	12.5	4	77	14	54	68	5	1	24	1.21
31487061--31487095	17	2.1	17	89	10	54	14	0	8	77	0.99
31487613--31488206	44	13.0	44	72	12	297	28	20	19	32	1.97
31487771--31487957	95	2.0	96	88	1	277	26	17	20	35	1.95
31488046--31488659	87	6.8	88	69	15	253	30	21	18	30	1.97
31488044--31488252	87	2.4	87	84	7	262	28	22	20	28	1.99
31488225--31488613	181	2.1	182	85	2	530	31	20	17	30	1.96
31488498--31488657	45	3.6	45	83	4	182	29	23	19	28	1.98
31490306--31490345	20	2.0	20	100	0	80	20	5	30	45	1.72
31494029--31494062	16	2.1	17	88	5	52	8	17	11	61	1.54
31500037--31500074	14	2.6	15	84	16	53	57	2	39	0	1.12
31501306--31501344	20	1.9	21	89	5	62	43	0	12	43	1.42
31521545--31521592	20	2.4	20	96	0	87	37	0	41	20	1.53
31524128--31524158	10	3.1	10	90	0	53	29	12	22	35	1.91
31527400--31527453	22	2.5	22	76	8	58	64	1	29	3	1.21
31530781--31530833	6	8.8	6	97	0	88	0	32	30	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31532455--31532488	15	2.2	15	89	5	50	52	2	2	41	1.31
31532533--31532614	38	2.2	38	97	0	155	39	2	3	54	1.31
31532785--31532946	8	19.4	8	63	17	53	51	14	1	32	1.50
31532811--31533188	19	20.2	19	69	23	209	53	13	1	31	1.47
31532811--31533035	27	9.1	26	78	19	259	53	13	0	31	1.46
31532758--31533035	49	5.7	49	88	3	413	53	14	1	30	1.48
31532985--31533188	40	5.1	40	77	14	222	53	13	0	31	1.46
31532985--31533203	120	1.8	121	90	5	354	53	14	0	31	1.47
31533022--31533186	21	8.1	21	73	17	134	55	13	1	30	1.46
31533345--31533385	14	2.6	17	75	25	54	0	39	0	60	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230