genome.fa.s19.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  117  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33992563--33992607	17	2.4	18	82	14	56	33	0	20	46	1.51
33996300--33996337	19	2.0	19	85	10	51	21	42	0	36	1.53
33998918--33999056	46	3.0	46	87	2	199	35	8	25	30	1.86
34002436--34002676	10	25.2	9	68	20	86	58	1	5	34	1.29
34002435--34002610	29	6.0	29	69	17	89	59	0	3	36	1.18
34002429--34002500	26	2.7	26	80	6	81	65	1	0	33	1.02
34002483--34002544	30	2.1	30	90	6	99	62	0	4	32	1.16
34002618--34002673	19	2.9	19	77	15	62	62	1	8	26	1.35
34002623--34002676	9	5.9	9	73	26	51	62	1	5	29	1.28
34002712--34002741	16	1.9	15	93	6	51	16	0	3	80	0.85
34002860--34002968	9	11.8	9	67	15	62	37	0	0	60	1.09
34002849--34002909	19	3.3	19	81	6	72	27	3	3	65	1.24
34002859--34002915	27	2.0	29	86	6	82	36	1	1	59	1.18
34002865--34002936	27	2.7	26	78	6	81	37	1	1	59	1.15
34003123--34003347	89	2.5	87	88	7	328	34	11	19	34	1.87
34004534--34004597	31	2.1	31	96	0	119	42	3	3	51	1.33
34008303--34008577	93	3.0	93	86	0	354	30	8	15	46	1.75
34008550--34008599	23	2.2	23	85	0	64	30	12	16	42	1.84
34008303--34008577	31	8.9	31	86	0	309	30	8	15	46	1.75
34008557--34008602	23	2.0	23	95	0	83	26	10	21	41	1.86
34012648--34012685	20	1.9	20	88	0	58	7	28	21	42	1.81
34014877--34014938	20	3.0	20	81	11	54	37	1	1	59	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34015513--34015554	22	1.9	22	85	9	59	14	0	35	50	1.43
34024851--34025162	33	8.8	33	68	23	170	20	18	27	33	1.96
34024819--34025048	102	2.3	102	93	0	388	20	19	28	32	1.96
34024949--34025160	76	2.8	75	91	0	334	21	18	27	32	1.97
34028567--34028616	20	2.4	22	80	12	61	74	4	18	4	1.14
34028565--34028616	21	2.7	19	85	11	63	75	3	17	3	1.11
34041087--34041121	4	9.0	4	93	6	63	74	0	25	0	0.82
34046654--34046720	35	1.9	35	90	3	109	32	8	11	46	1.72
34050658--34050704	22	2.1	22	88	0	67	19	19	46	14	1.84
34050808--34050854	22	2.1	22	92	0	76	14	17	51	17	1.77
34050913--34050943	8	3.8	8	91	8	53	35	0	54	9	1.33
34050913--34050941	9	3.3	9	95	4	51	31	0	58	10	1.31
34051494--34051533	18	2.2	18	86	8	55	67	0	0	32	0.91
34051931--34051960	16	1.9	16	93	6	53	63	0	3	33	1.11
34054654--34054779	35	3.6	35	91	0	180	24	13	18	43	1.86
34054877--34054976	49	2.0	49	84	3	130	24	21	20	35	1.96
34058239--34058263	10	2.5	10	100	0	50	16	40	0	44	1.47
34060563--34060591	3	9.7	3	100	0	58	65	0	0	34	0.93
34060593--34060704	4	28.0	4	94	0	197	48	0	25	25	1.52
34060734--34060819	43	2.0	43	100	0	172	53	6	13	25	1.65
34065789--34065854	25	2.6	25	71	17	73	43	3	16	36	1.64
34071926--34071961	18	2.0	18	100	0	72	44	5	11	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34074468--34074504	18	2.1	18	94	0	65	54	16	13	16	1.72
34074679--34074729	18	2.9	16	81	18	50	33	1	23	41	1.66
34075837--34076125	43	6.7	43	78	6	257	28	29	17	24	1.97
34075845--34076081	87	2.7	87	82	3	291	28	30	16	24	1.97
34075837--34076137	129	2.3	128	79	9	319	28	29	16	24	1.97
34078670--34078699	15	2.1	15	93	6	53	36	16	0	46	1.47
34080099--34080225	37	3.3	38	77	9	123	22	20	20	36	1.95
34082744--34082774	14	2.2	14	94	0	53	74	0	9	16	1.07
34093937--34093990	27	2.0	28	85	10	76	12	14	11	61	1.58
34128491--34128539	20	2.5	20	82	0	71	26	32	14	26	1.94
34138377--34138642	125	2.1	125	90	0	426	30	16	23	30	1.96
34138923--34138961	16	2.4	16	78	0	51	15	0	28	56	1.40
34138933--34138969	9	4.3	9	83	10	51	13	0	29	56	1.37
34138188--34139423	644	1.9	639	93	2	2147	25	16	26	30	1.97
34140515--34140575	25	2.3	26	80	8	79	55	0	1	42	1.09
34149653--34149686	17	2.0	17	88	0	50	44	2	0	52	1.16
34152088--34152125	19	2.0	19	94	0	67	47	2	0	50	1.15
34155449--34155491	22	2.0	21	82	13	52	34	4	20	39	1.74
34156733--34156775	11	3.9	11	87	6	61	48	11	30	9	1.71
34156931--34156979	20	2.5	20	86	0	62	51	0	26	22	1.49
34156932--34156987	20	2.8	19	81	5	58	50	0	28	21	1.49
34170522--34170648	39	3.3	39	92	2	202	17	31	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34172213--34172254	21	2.0	21	85	0	57	47	0	26	26	1.52
34180324--34180391	27	2.5	28	78	9	77	27	30	19	22	1.97
34180324--34180455	28	4.7	27	70	14	72	27	27	15	29	1.96
34180365--34180485	57	2.1	57	83	3	145	24	23	17	34	1.96
34181863--34181953	39	2.3	38	85	12	121	36	21	18	23	1.95
34182499--34182658	7	22.4	7	69	8	63	21	1	31	45	1.62
34182567--34182688	29	4.3	28	75	9	104	23	0	34	40	1.61
34186358--34186401	23	1.9	22	82	17	54	36	25	0	38	1.56
34186536--34186731	51	3.9	50	81	4	232	30	29	17	22	1.97
34186542--34186727	101	1.8	99	88	5	275	31	28	17	22	1.97
34190363--34190490	43	3.0	43	84	2	159	22	17	27	32	1.96
34191069--34191213	39	3.7	39	95	0	254	30	2	21	45	1.66
34191084--34191213	8	16.6	8	67	19	51	30	2	21	46	1.64
34191069--34191234	39	4.2	40	90	6	234	29	3	21	45	1.67
34191183--34191263	39	2.1	38	81	6	92	35	4	19	39	1.74
34194754--34195016	40	6.6	40	87	3	316	27	27	20	24	1.99
34196596--34196724	53	2.4	53	88	0	186	29	24	12	33	1.92
34196596--34196750	53	2.9	53	83	1	150	29	23	13	32	1.93
34197784--34197845	30	2.1	30	96	0	115	29	25	19	25	1.99
34202925--34202971	19	2.4	20	92	3	78	38	12	10	38	1.78
34212441--34212525	17	4.8	18	71	17	63	55	1	2	41	1.20
34212411--34212477	27	2.5	26	79	15	66	56	1	2	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34214350--34214447	4	24.5	4	97	0	178	47	24	2	25	1.62
34221342--34221371	15	2.0	15	93	0	51	30	16	13	40	1.87
34229920--34229987	34	2.0	34	91	0	109	30	26	10	32	1.90
34233784--34233840	14	4.0	15	86	8	84	36	5	17	40	1.72
34233815--34233901	33	2.7	32	74	15	88	26	8	19	45	1.78
34233934--34234052	38	3.2	38	66	17	104	32	4	5	57	1.39
34235292--34235360	35	1.9	36	97	2	131	52	18	2	26	1.60
34237136--34237202	33	2.0	33	91	0	107	40	2	43	13	1.59
34244533--34244563	13	2.4	13	94	0	53	54	12	0	32	1.38
34245651--34245751	27	3.7	27	75	10	82	39	11	22	25	1.88
34248661--34248951	50	5.9	50	82	3	295	23	28	21	26	1.99
34253105--34253154	24	2.1	24	100	0	100	26	30	4	40	1.74
34256019--34256089	29	2.4	29	80	0	70	36	28	16	18	1.93
34260272--34260453	91	2.0	91	94	0	319	31	20	3	43	1.70
34273062--34273159	28	3.6	26	86	9	133	31	12	26	29	1.92
34274146--34274433	47	6.1	47	89	2	348	25	12	18	43	1.85
34275245--34275284	15	2.7	14	88	11	62	60	2	37	0	1.11
34285945--34286132	50	3.6	50	82	4	205	23	29	20	26	1.99
34289194--34289250	25	2.3	25	84	6	71	24	19	24	31	1.98
34298100--34298139	21	1.9	21	89	0	62	27	32	5	35	1.79
34305887--34306011	62	2.0	62	100	0	250	28	27	8	36	1.85
34308149--34308243	25	3.8	25	78	0	100	28	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34312686--34312771	45	1.9	45	90	0	136	34	22	15	27	1.94
34312773--34312968	51	3.9	50	79	4	223	31	29	16	22	1.96
34312780--34312964	101	1.8	101	90	3	300	31	28	16	22	1.96
34316996--34317034	6	6.5	6	100	0	78	33	51	0	15	1.44
34322526--34322882	27	13.3	27	84	3	371	45	18	17	18	1.86
34322545--34322883	81	4.2	81	85	1	412	45	17	18	19	1.86
34323057--34323133	27	2.9	26	78	3	91	15	24	23	36	1.94
34323251--34323320	30	2.4	30	88	4	99	25	21	24	28	1.99
34327212--34327500	119	2.4	120	92	2	483	42	2	4	50	1.35
34327332--34327387	15	3.5	18	75	24	63	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230