genome.fa.s19.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  132  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38491849--38491957	30	3.7	29	79	4	128	30	14	22	32	1.94
38494915--38494992	37	2.0	39	87	7	115	64	0	1	34	1.02
38503120--38503592	47	10.1	47	94	0	750	32	9	29	28	1.88
38503710--38503788	37	2.1	37	88	4	115	25	18	30	25	1.98
38505641--38505786	43	3.4	43	99	0	283	23	15	34	26	1.94
38505768--38505841	29	2.6	29	82	4	87	27	16	29	27	1.97
38506152--38506347	40	4.9	40	81	5	184	26	22	27	24	2.00
38506152--38506348	80	2.5	81	82	5	222	25	22	26	24	2.00
38509926--38510398	47	10.1	47	94	0	759	32	9	29	28	1.88
38510517--38510595	37	2.1	37	88	4	115	25	18	30	25	1.98
38513641--38513705	29	2.2	30	94	2	114	30	7	30	30	1.85
38515103--38515177	33	2.2	34	92	2	125	42	13	6	37	1.70
38518391--38518429	18	2.2	18	90	9	62	5	20	2	71	1.17
38521177--38521218	20	2.1	20	100	0	84	33	9	14	42	1.78
38526076--38526199	41	3.0	40	84	6	142	20	18	18	42	1.89
38531333--38531398	25	2.6	25	82	0	78	33	18	21	27	1.96
38531484--38531613	13	9.8	13	66	9	57	38	3	19	38	1.70
38537634--38537807	85	2.0	85	97	0	330	29	9	20	40	1.84
38538738--38538794	27	2.1	27	90	3	89	38	5	5	50	1.47
38544238--38544287	24	2.2	24	82	13	61	30	32	4	34	1.76
38545610--38545684	27	2.6	29	82	16	77	36	20	1	42	1.60
38545854--38545939	24	3.5	24	76	7	84	30	23	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38551756--38551843	45	2.0	45	93	0	149	34	21	18	26	1.96
38551854--38552040	51	3.7	50	80	4	232	30	27	17	24	1.97
38551852--38552036	101	1.8	101	89	3	291	30	27	17	23	1.97
38554680--38554725	23	2.0	23	95	0	83	26	45	0	28	1.54
38554940--38554977	19	2.0	20	84	5	51	31	7	2	57	1.41
38555415--38555472	13	4.5	13	77	0	62	50	1	15	32	1.55
38555415--38555486	26	2.7	26	91	4	117	51	2	15	30	1.57
38555463--38555540	40	1.9	41	82	7	97	42	2	15	39	1.61
38555573--38555608	13	2.8	13	91	0	54	44	0	22	33	1.53
38568543--38568699	74	2.1	74	79	6	167	35	21	24	18	1.96
38574282--38574356	19	3.8	19	91	6	114	36	18	10	34	1.86
38577831--38577890	30	2.0	31	83	9	79	20	38	0	41	1.52
38580542--38580584	21	2.0	21	100	0	86	18	9	4	67	1.36
38581931--38582000	21	3.4	21	65	23	58	34	4	10	51	1.55
38581931--38582007	40	1.9	40	100	0	154	33	5	10	50	1.59
38582246--38582281	18	2.0	18	100	0	72	33	11	22	33	1.89
38588362--38588539	27	6.6	27	83	3	205	26	15	28	29	1.96
38588363--38588518	82	1.9	81	88	3	233	26	15	28	29	1.96
38588359--38588539	82	2.2	81	83	2	229	27	15	27	29	1.96
38591923--38591990	30	2.3	31	87	5	95	39	11	26	22	1.88
38591978--38592140	29	5.5	29	71	11	125	42	13	23	19	1.87
38591979--38592182	30	6.9	30	71	8	148	40	14	24	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38591942--38592181	89	2.7	89	84	2	320	40	15	23	20	1.90
38597431--38597895	40	11.6	40	92	0	752	27	19	27	24	1.99
38600403--38600600	30	6.6	30	76	10	140	39	13	23	23	1.90
38600399--38600511	60	1.9	60	87	3	165	37	13	23	26	1.91
38600492--38600624	30	4.5	30	76	6	137	41	14	24	19	1.89
38604756--38604895	50	2.8	52	83	5	196	32	29	15	23	1.95
38604751--38604886	51	2.7	50	86	3	184	31	28	15	24	1.95
38605003--38605032	15	1.9	16	93	6	53	20	13	0	66	1.24
38610413--38610494	42	2.0	42	95	0	146	21	20	39	18	1.93
38616135--38616248	44	2.6	44	81	0	138	21	25	23	28	1.99
38616257--38616374	44	2.7	43	77	10	125	26	20	20	33	1.97
38616428--38616864	87	5.0	87	91	0	694	23	24	23	28	1.99
38618080--38618117	7	5.6	7	84	6	51	13	15	0	71	1.16
38618070--38618112	13	3.2	13	83	9	50	16	13	0	69	1.19
38618080--38618117	20	1.9	20	88	0	58	13	15	0	71	1.16
38618542--38618624	42	2.0	42	83	11	107	7	10	8	73	1.25
38626103--38626301	54	3.7	54	86	1	292	36	13	23	26	1.92
38626428--38626523	29	3.2	29	73	5	86	17	12	27	42	1.85
38626431--38626543	58	1.9	58	84	12	149	18	13	27	40	1.88
38630174--38630215	15	2.7	16	82	14	52	52	2	0	45	1.13
38630183--38630224	15	2.9	15	82	10	52	52	0	0	47	1.00
38630177--38630948	120	6.4	120	97	0	1422	49	5	2	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38630289--38630344	15	3.8	15	79	13	55	51	1	0	46	1.11
38630413--38630464	15	3.6	15	80	12	56	53	1	0	44	1.11
38630533--38630584	15	3.6	15	80	12	56	53	1	0	44	1.11
38630653--38630704	15	3.6	15	80	12	56	53	1	0	44	1.11
38630774--38630824	15	3.5	15	82	12	54	52	1	0	45	1.12
38630989--38631049	28	2.2	28	85	5	81	50	3	0	45	1.17
38630945--38631152	91	2.3	91	87	3	276	50	3	2	43	1.33
38630996--38631139	47	3.1	46	67	23	122	50	3	2	44	1.30
38630989--38631131	44	3.2	43	69	13	126	48	2	2	46	1.28
38631014--38631152	47	3.0	47	69	14	144	50	3	2	43	1.31
38632578--38632604	11	2.5	11	100	0	54	51	18	7	22	1.70
38634181--38634216	15	2.4	15	100	0	72	44	11	8	36	1.70
38641152--38641197	18	2.6	18	86	3	58	23	0	2	73	0.94
38647765--38647816	18	2.9	17	78	13	59	75	1	3	19	1.06
38648094--38648180	20	4.3	21	76	11	83	35	4	0	59	1.18
38652286--38653334	522	2.0	522	97	0	1983	30	13	22	32	1.93
38655058--38655276	39	5.6	39	88	2	296	31	2	18	47	1.61
38662662--38662733	36	2.0	36	88	0	108	27	15	20	36	1.93
38667426--38667493	30	2.3	29	92	2	109	57	17	2	22	1.53
38672902--38673142	50	4.7	49	80	4	212	23	29	20	26	1.99
38672913--38673142	100	2.2	104	83	4	270	23	30	20	26	1.99
38674821--38674884	33	1.9	33	100	0	128	42	4	21	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38674865--38674895	12	2.6	12	100	0	62	41	0	25	32	1.56
38675931--38675973	17	2.5	17	96	0	77	20	32	25	20	1.97
38677385--38677524	25	5.6	25	83	4	131	32	21	22	23	1.98
38678754--38678942	59	3.2	57	71	16	152	40	11	25	22	1.88
38678840--38678913	29	2.5	29	93	2	121	40	9	25	24	1.85
38678901--38679007	30	3.6	30	82	6	137	38	11	29	20	1.87
38678812--38679016	59	3.5	60	77	8	186	39	12	27	20	1.89
38678745--38679002	118	2.2	118	85	2	347	39	12	25	22	1.88
38678813--38679015	89	2.3	89	84	5	259	38	12	27	21	1.89
38681437--38681464	8	3.5	8	100	0	56	10	0	0	89	0.49
38681458--38681487	11	2.6	11	94	5	51	36	3	0	60	1.14
38681437--38681503	8	7.3	9	80	11	50	25	1	0	73	0.92
38681470--38681541	28	2.4	32	86	11	107	31	2	1	63	1.17
38683297--38683346	25	2.0	25	92	0	82	44	8	18	30	1.78
38692262--38692321	9	6.4	9	79	11	59	41	0	3	55	1.16
38692262--38692321	19	3.2	19	78	2	68	41	0	3	55	1.16
38692274--38692317	10	4.7	9	88	8	61	50	0	2	47	1.13
38699750--38699853	41	2.6	40	84	4	129	48	5	24	22	1.72
38699818--38699871	24	2.2	24	83	0	72	59	7	18	14	1.58
38699925--38699991	21	3.4	21	68	16	70	46	13	4	35	1.63
38699918--38699995	38	2.1	38	97	0	147	44	14	3	37	1.63
38699936--38699999	21	3.2	21	63	24	57	45	15	3	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38714729--38714801	19	3.8	19	92	0	128	38	16	8	36	1.79
38714706--38714801	38	2.4	39	87	6	131	39	16	7	36	1.77
38723884--38724062	42	4.3	41	80	10	166	43	18	20	17	1.88
38723900--38724062	84	1.9	84	85	2	220	42	19	20	17	1.89
38723893--38724095	21	9.7	21	66	5	97	42	18	20	19	1.90
38730681--38730725	22	2.0	22	95	0	81	35	2	0	62	1.08
38730784--38730850	27	2.5	27	95	0	116	28	29	26	14	1.96
38730893--38731022	4	31.8	4	69	18	81	66	0	33	0	0.98
38730882--38730949	18	4.1	18	73	21	67	61	0	38	0	0.96
38730895--38731063	40	4.3	41	75	18	128	66	0	33	0	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230