genome.fa.s19.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  164  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48760394--48760823	86	5.0	86	91	2	621	25	23	22	29	1.99
48760553--48760687	42	3.2	42	62	12	103	28	23	20	27	1.99
48760681--48760819	44	3.2	43	67	15	104	25	22	23	28	1.99
48765102--48765145	19	2.3	20	84	7	56	36	11	25	27	1.90
48767032--48767063	12	2.7	12	95	0	55	71	0	9	18	1.12
48767719--48767771	3	17.7	3	77	14	56	62	1	1	33	1.17
48767719--48767749	16	1.9	16	93	0	53	64	0	3	32	1.09
48770870--48770902	16	2.1	16	94	0	57	42	3	18	36	1.66
48789790--48789847	27	2.1	27	100	0	116	29	18	6	44	1.76
48790998--48791132	46	2.9	46	78	0	153	34	24	18	22	1.96
48796386--48796503	21	5.7	21	77	4	123	47	16	18	16	1.83
48796386--48796503	40	2.9	42	79	5	132	47	16	18	16	1.83
48796386--48796500	61	1.9	61	87	0	167	46	17	19	16	1.84
48799840--48799876	17	2.2	17	90	9	58	51	18	0	29	1.47
48801956--48801995	19	2.2	19	86	13	57	12	17	10	60	1.59
48809893--48809923	6	5.2	6	96	0	53	64	16	19	0	1.29
48810820--48810850	12	2.6	12	89	0	53	0	9	0	90	0.46
48811966--48812030	22	3.0	22	86	6	71	24	32	0	43	1.55
48811980--48812030	22	2.3	22	96	0	93	27	31	0	41	1.56
48812085--48812151	31	2.2	31	94	2	118	37	0	0	62	0.95
48813900--48813934	18	1.9	18	88	0	52	28	31	8	31	1.87
48814334--48814382	25	1.9	26	91	4	82	42	2	16	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48814423--48814486	18	3.7	18	68	19	55	46	26	1	25	1.61
48814453--48814892	29	14.8	29	88	5	621	45	31	0	22	1.55
48814507--48814579	6	12.5	6	76	11	55	42	39	0	17	1.50
48814444--48814892	122	3.8	120	90	4	667	45	31	0	22	1.55
48814890--48815218	56	5.9	55	85	6	468	35	11	5	47	1.63
48814891--48815222	110	3.0	110	95	1	592	35	11	5	46	1.64
48818828--48819052	40	5.7	40	83	8	264	24	21	28	25	1.99
48821559--48821912	125	2.8	126	92	3	606	32	22	15	29	1.95
48823907--48823987	21	4.1	19	69	15	58	65	0	1	33	1.01
48823993--48824047	18	2.8	20	71	20	53	70	1	3	23	1.12
48824218--48824320	19	5.4	19	73	13	70	26	3	3	66	1.27
48824290--48824360	19	3.5	20	72	12	56	33	1	0	64	1.02
48828941--48828993	21	2.5	21	84	6	63	32	3	5	58	1.39
48831782--48832071	43	6.8	43	79	5	241	26	27	18	27	1.98
48831781--48832037	129	2.0	128	80	3	293	25	26	19	28	1.99
48836942--48836983	6	6.8	6	82	15	50	19	2	0	78	0.86
48842326--48842398	23	3.2	23	88	0	119	31	24	20	23	1.98
48842485--48842513	8	3.6	8	100	0	58	34	27	13	24	1.93
48844282--48844477	50	3.9	50	89	0	284	20	30	22	26	1.98
48846590--48846621	6	4.9	7	92	7	50	46	43	0	9	1.35
48846650--48846688	20	1.9	20	89	5	60	38	51	0	10	1.36
48846660--48846698	20	2.0	20	85	5	53	38	43	0	17	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48847421--48847738	41	7.8	40	79	3	242	27	26	22	23	2.00
48847428--48847742	82	3.8	82	79	5	289	27	26	22	23	1.99
48849024--48849054	3	10.3	3	100	0	62	35	0	32	32	1.58
48850199--48850290	45	2.0	45	100	0	184	27	19	13	40	1.88
48850520--48850773	86	3.0	86	98	0	490	31	22	14	32	1.94
48852681--48852730	18	2.8	18	78	0	64	10	38	4	48	1.56
48861570--48861605	18	2.0	18	100	0	72	27	27	5	38	1.79
48861951--48861989	18	2.2	18	95	0	69	23	5	17	53	1.63
48862195--48862241	21	2.3	20	82	7	60	40	4	2	53	1.32
48862209--48862249	21	2.0	22	90	9	68	34	4	7	53	1.50
48862521--48862571	16	3.2	16	75	10	59	29	17	1	50	1.57
48862798--48862831	17	1.9	18	88	5	52	47	2	11	38	1.55
48866525--48866563	20	2.0	20	94	0	69	28	12	15	43	1.83
48879010--48879186	27	6.6	27	83	5	196	29	28	15	26	1.96
48879031--48879185	81	1.9	81	89	2	240	29	28	15	26	1.96
48886922--48887099	27	6.6	27	83	3	196	30	28	14	26	1.95
48886943--48887098	82	1.9	81	86	3	224	30	28	14	26	1.95
48892305--48892482	51	3.5	49	84	5	214	25	16	27	29	1.97
48892493--48892580	46	2.0	44	82	8	106	25	17	22	35	1.95
48892687--48892759	37	1.9	38	86	2	103	43	2	20	32	1.66
48897761--48897913	50	3.0	51	78	1	182	27	15	28	28	1.96
48905126--48905182	29	2.0	29	96	0	105	21	36	5	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48908690--48908809	28	4.2	28	74	5	98	36	20	19	24	1.95
48908734--48908805	29	2.5	27	78	10	72	43	18	19	19	1.89
48915708--48915734	13	2.1	13	100	0	54	33	14	7	44	1.73
48936343--48936397	17	3.0	18	80	20	69	45	1	3	49	1.30
48948962--48948993	13	2.3	15	89	10	50	37	15	6	40	1.73
48970438--48970607	40	4.3	40	87	0	216	27	28	20	24	1.99
49005866--49005917	24	2.2	24	89	0	77	34	3	7	53	1.48
49009003--49009030	3	9.3	3	100	0	56	0	32	0	67	0.91
49020605--49020769	46	3.6	45	76	6	161	27	20	21	31	1.98
49024076--49024114	20	2.0	20	84	0	51	58	0	2	38	1.12
49024406--49024445	17	2.3	19	79	12	50	45	0	0	55	0.99
49025178--49025207	5	5.8	5	96	4	51	76	0	0	23	0.78
49026092--49026140	23	2.2	23	96	3	91	51	8	2	38	1.43
49026446--49026498	26	2.0	26	88	0	79	24	13	15	47	1.81
49026826--49026909	44	1.9	44	82	4	107	50	2	4	42	1.36
49035034--49035083	25	2.0	26	88	4	75	38	12	8	42	1.71
49037975--49038008	17	2.0	17	94	0	59	26	11	20	41	1.87
49039273--49039455	69	2.7	69	87	0	249	42	19	14	24	1.88
49040684--49040741	30	1.9	31	85	3	82	24	24	6	44	1.77
49041773--49042576	152	5.3	152	85	7	1087	31	9	7	51	1.63
49041773--49042576	302	2.6	303	86	6	1133	31	9	7	51	1.63
49048264--49048449	69	2.7	69	88	0	273	42	17	15	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49049231--49049338	42	2.5	42	80	4	128	30	21	17	30	1.96
49056133--49056172	18	2.3	19	87	12	59	20	7	12	60	1.56
49058917--49058945	11	2.7	11	94	5	51	20	10	0	68	1.18
49061579--49061692	56	2.0	56	84	3	149	31	21	27	20	1.98
49061619--49061653	17	2.0	18	88	5	54	20	22	37	20	1.95
49065472--49065536	25	2.5	26	80	2	78	33	6	23	36	1.80
49065472--49065536	13	5.1	13	79	3	78	33	6	23	36	1.80
49075440--49075464	13	1.9	13	100	0	50	32	16	12	40	1.84
49089338--49089484	73	2.0	74	93	1	251	44	21	9	24	1.81
49096843--49097012	40	4.3	40	85	0	207	24	30	21	23	1.99
49104743--49104964	40	5.6	39	81	3	203	24	29	21	24	1.99
49104741--49104911	78	2.2	79	83	3	218	25	30	21	23	1.99
49108138--49108291	42	3.6	41	81	8	159	26	24	16	32	1.96
49120397--49120521	6	20.3	6	69	16	60	49	13	18	18	1.79
49120408--49120493	37	2.3	37	84	4	102	51	10	18	19	1.75
49120639--49120746	27	4.0	26	83	5	108	36	20	23	20	1.95
49121483--49121616	27	5.0	27	87	0	180	26	21	17	35	1.95
49133858--49134025	40	4.3	40	85	3	207	25	29	22	23	1.99
49133856--49134025	79	2.2	78	83	3	216	25	29	21	23	1.99
49141759--49141928	40	4.3	40	85	0	207	24	30	21	23	1.99
49144120--49144168	23	2.1	23	92	0	80	42	24	8	24	1.81
49144326--49144384	30	1.9	31	86	3	84	47	3	20	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49145246--49145312	33	2.0	33	94	0	116	41	7	10	40	1.67
49151044--49151068	8	3.1	8	100	0	50	24	40	12	24	1.88
49152550--49152589	21	1.9	21	85	10	55	10	17	7	65	1.46
49170559--49170606	25	1.9	25	91	0	78	22	22	18	35	1.96
49179691--49179913	119	1.9	120	84	6	301	25	27	22	24	2.00
49179689--49179913	40	5.7	40	85	6	287	25	28	22	24	2.00
49185273--49185412	27	5.2	27	77	3	111	32	38	10	19	1.85
49187328--49187680	173	2.0	173	93	1	609	30	11	20	37	1.88
49193549--49193668	20	5.9	20	75	1	114	10	24	20	44	1.83
49194013--49194253	80	3.0	80	95	0	410	41	6	16	35	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230