genome.fa.s19.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  184  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55170712--55170785	7	10.7	7	92	4	80	36	0	10	52	1.36
55170712--55170785	14	5.4	14	87	6	89	36	0	10	52	1.36
55170683--55170785	21	4.9	20	79	9	73	33	0	8	58	1.29
55171950--55171978	8	3.6	8	100	0	58	65	0	0	34	0.93
55176730--55176829	48	2.1	48	96	0	182	34	2	42	22	1.65
55177859--55178377	27	19.2	27	81	5	523	43	17	15	22	1.88
55178571--55178673	26	4.0	26	77	5	111	20	25	22	32	1.98
55178571--55178677	52	2.1	52	85	3	144	21	24	22	31	1.98
55178794--55178896	30	3.5	28	76	14	100	22	24	25	28	1.99
55182571--55182617	17	2.6	18	83	6	60	27	4	4	63	1.31
55184896--55185034	71	2.0	71	100	0	278	36	12	29	21	1.90
55186465--55186525	27	2.3	27	82	0	68	22	13	22	40	1.89
55186478--55186849	27	13.9	27	84	4	423	18	16	20	44	1.86
55186478--55186861	134	2.9	133	84	4	409	18	16	20	44	1.86
55201471--55201515	18	2.4	19	78	14	58	24	6	6	62	1.44
55209734--55209778	22	2.0	22	100	0	90	35	13	17	33	1.89
55211841--55211868	6	4.7	6	100	0	56	17	28	0	53	1.44
55235985--55236012	13	2.2	13	100	0	56	0	25	14	60	1.34
55242815--55242853	19	2.2	18	86	9	53	10	12	2	74	1.17
55247849--55247893	12	3.6	12	84	6	54	0	24	0	75	0.80
55247849--55247893	14	3.5	13	88	11	58	0	24	0	75	0.80
55247918--55247956	19	2.2	18	86	9	53	10	12	2	74	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55257469--55257607	41	3.5	40	69	11	106	30	24	16	28	1.97
55260629--55260679	14	3.7	14	79	10	52	0	25	0	74	0.82
55260639--55260723	11	7.3	11	70	20	57	2	22	3	71	1.12
55260642--55260704	25	2.5	26	82	7	67	1	25	4	68	1.18
55261015--55261049	17	2.1	17	100	0	70	34	5	5	54	1.48
55262867--55262893	12	2.2	12	100	0	54	74	0	0	25	0.83
55268313--55268488	95	1.9	95	97	0	334	32	15	20	31	1.94
55269651--55269810	83	1.9	83	97	0	302	44	11	9	34	1.73
55269788--55269816	15	1.9	15	100	0	58	44	6	6	41	1.58
55273131--55273237	45	2.4	45	78	6	110	39	20	14	26	1.90
55280055--55280661	44	13.2	44	66	18	170	28	21	17	32	1.96
55280083--55280652	142	4.0	142	92	1	946	28	21	17	32	1.96
55298962--55299034	29	2.6	28	89	8	98	50	9	17	21	1.74
55298977--55299034	29	2.0	29	100	0	116	51	10	17	20	1.74
55301920--55301944	13	1.9	13	100	0	50	8	12	8	72	1.29
55313476--55313506	16	1.9	16	100	0	62	19	12	16	51	1.76
55322799--55322840	17	2.5	17	88	7	59	57	16	14	11	1.66
55322844--55322891	16	2.8	17	74	20	55	66	0	0	33	0.92
55322837--55322891	22	2.7	20	77	5	56	67	0	0	32	0.91
55322848--55322887	20	1.9	20	85	10	53	65	0	0	35	0.93
55323331--55323399	20	3.5	20	91	0	93	56	7	7	28	1.53
55327022--55327067	24	2.0	23	86	4	65	65	2	0	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55327522--55327562	20	2.0	20	90	0	64	53	4	7	34	1.50
55329072--55329103	14	2.4	14	90	10	50	65	0	6	28	1.16
55329113--55329159	12	3.9	12	91	0	67	72	10	2	14	1.21
55329065--55329141	34	2.2	35	81	2	84	70	5	3	20	1.23
55329113--55329153	18	2.3	18	91	0	64	70	12	2	14	1.26
55329120--55329159	18	2.2	18	90	0	62	75	10	0	15	1.05
55329085--55329160	6	12.0	6	78	10	53	72	6	1	19	1.14
55331006--55331056	16	3.1	17	83	11	61	41	0	0	58	0.98
55333411--55333440	2	15.0	2	100	0	60	50	0	50	0	1.00
55339306--55339375	24	2.8	24	73	4	59	20	22	24	32	1.97
55346718--55346765	25	2.0	25	91	4	80	39	20	25	14	1.91
55356348--55356388	17	2.5	17	88	4	57	46	9	17	26	1.79
55372559--55372672	42	2.8	42	75	2	115	21	18	24	35	1.96
55385553--55385639	27	3.2	27	82	4	113	36	19	24	19	1.95
55385633--55385867	27	8.7	26	82	3	184	36	17	20	25	1.94
55385688--55385897	27	7.8	27	84	3	253	34	17	22	25	1.96
55385659--55385897	81	3.0	81	84	1	264	35	17	21	25	1.95
55385553--55385894	54	6.4	54	79	8	277	36	17	21	24	1.95
55385958--55386016	24	2.5	24	80	5	75	22	6	23	47	1.75
55386115--55386170	26	2.2	26	83	0	67	14	21	28	35	1.92
55386161--55386381	32	6.9	32	80	4	221	19	23	21	35	1.96
55386160--55386394	96	2.5	95	79	6	260	19	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55386387--55386451	22	3.0	22	70	4	60	24	18	13	43	1.87
55387675--55387799	34	3.7	34	88	1	162	23	13	28	34	1.93
55389655--55389710	23	2.4	23	84	0	67	39	26	19	14	1.90
55389668--55389803	23	5.9	23	74	8	116	36	24	16	22	1.94
55397230--55397358	40	3.2	40	83	2	152	40	30	16	13	1.86
55401817--55401854	4	9.0	4	88	11	58	0	26	0	73	0.83
55401818--55401855	9	4.3	9	90	3	60	0	23	0	76	0.79
55401817--55401854	13	3.0	12	88	11	58	0	26	0	73	0.83
55401884--55401941	22	2.7	23	84	12	70	27	6	0	65	1.18
55401903--55401950	14	3.4	14	77	8	53	33	4	0	62	1.14
55409727--55409787	17	3.8	17	70	12	65	57	1	4	36	1.30
55410663--55410718	29	1.9	29	85	0	76	50	0	0	50	1.00
55414329--55414358	11	2.7	11	100	0	60	16	0	53	30	1.44
55416717--55416758	3	14.0	3	100	0	84	0	0	66	33	0.92
55431355--55431534	34	5.3	34	88	0	225	33	32	13	20	1.91
55435048--55435092	20	2.1	22	84	12	58	13	11	8	66	1.44
55440663--55440936	35	8.1	34	85	6	335	41	17	22	18	1.90
55440663--55440936	67	4.0	67	88	4	340	41	17	22	18	1.90
55440673--55440936	102	2.6	102	92	1	426	40	18	23	18	1.91
55445873--55445901	12	2.5	12	94	5	51	37	0	20	41	1.53
55453125--55453243	44	2.7	43	76	13	134	30	29	18	21	1.97
55460425--55460531	44	2.4	43	76	13	110	29	27	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55466296--55466343	12	3.8	13	75	8	55	72	4	0	22	1.01
55466296--55466343	17	2.5	19	83	12	55	72	4	0	22	1.01
55466296--55466343	25	1.9	25	82	0	60	72	4	0	22	1.01
55473128--55473202	18	4.3	18	74	12	59	64	4	1	30	1.20
55474770--55475081	173	1.8	173	83	5	425	27	23	21	27	1.99
55475099--55475540	44	10.2	44	61	12	117	24	23	21	30	1.99
55475064--55475590	132	4.0	132	89	3	852	23	24	21	30	1.99
55475070--55475546	257	1.9	257	95	0	855	24	24	20	30	1.99
55477733--55477954	40	5.7	39	83	9	244	25	22	27	24	2.00
55477733--55477987	79	3.3	78	81	10	195	26	21	27	24	2.00
55486497--55486542	24	1.9	24	86	0	65	10	26	17	45	1.81
55492776--55492826	10	5.2	10	77	11	52	74	1	0	23	0.92
55492776--55492836	30	2.0	29	84	12	79	72	1	0	26	0.94
55492782--55492870	17	5.1	16	69	16	52	68	3	0	28	1.05
55493464--55493531	16	4.2	16	90	7	102	27	0	33	38	1.57
55493464--55493531	32	2.1	32	94	0	118	27	0	33	38	1.57
55493661--55493970	157	2.0	157	93	0	530	43	3	4	47	1.41
55494850--55494879	13	2.3	13	100	0	60	60	13	6	20	1.55
55508959--55509031	38	1.9	38	91	0	119	42	16	10	30	1.82
55510061--55510140	34	2.4	35	89	8	130	42	32	11	13	1.80
55510771--55510800	16	1.9	16	93	6	53	50	20	0	30	1.49
55528238--55528292	22	2.5	22	81	0	65	54	1	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55528268--55528307	16	2.5	16	87	0	53	50	2	7	40	1.44
55528296--55528501	68	3.1	66	93	4	333	39	4	9	46	1.57
55528380--55528407	9	3.1	9	100	0	56	32	0	10	57	1.33
55530396--55530567	90	1.9	90	86	2	247	38	21	11	29	1.88
55530591--55530705	9	12.4	9	71	14	83	64	0	2	32	1.13
55530601--55530661	26	2.2	28	83	13	74	63	0	1	34	1.04
55530801--55530881	17	4.4	18	74	17	69	28	6	1	64	1.25
55530831--55530898	8	7.9	8	76	9	55	27	2	1	67	1.13
55530975--55531167	89	2.2	88	85	3	257	34	9	17	38	1.83
55530977--55531195	89	2.5	88	82	6	248	33	9	16	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230