genome.fa.s19.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  159  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47124116--47124248	39	3.4	39	94	2	223	27	48	12	11	1.76
47124211--47124274	27	2.4	27	89	5	94	26	51	10	10	1.70
47124704--47124736	2	16.5	2	100	0	66	51	0	48	0	1.00
47126488--47126535	24	2.0	24	87	0	69	45	0	18	35	1.50
47129247--47129391	59	2.5	58	79	4	148	15	0	31	51	1.49
47129247--47129421	30	6.0	29	80	12	160	16	0	30	53	1.47
47129247--47129422	29	6.0	30	80	12	168	15	0	30	53	1.47
47129355--47129406	14	3.6	14	78	12	61	15	0	26	57	1.38
47129293--47129422	59	2.2	59	85	6	167	15	0	28	55	1.46
47129855--47129895	14	2.8	15	81	7	57	12	14	12	60	1.58
47130339--47130454	48	2.4	48	85	0	151	27	0	40	31	1.62
47130406--47130555	81	1.9	81	88	2	230	24	1	45	29	1.61
47130524--47130627	24	4.2	24	66	16	68	20	2	49	27	1.63
47132946--47133257	158	2.0	157	87	0	444	38	16	12	32	1.86
47135169--47135203	18	1.9	18	88	0	52	14	14	0	71	1.15
47136856--47136890	16	2.2	16	90	10	54	45	11	5	37	1.64
47139302--47139424	5	24.8	5	96	1	230	39	19	0	40	1.52
47140940--47141020	41	2.0	41	90	4	128	19	27	24	28	1.99
47146940--47146988	25	2.0	25	87	0	71	32	18	14	34	1.91
47152476--47152809	51	6.6	50	76	5	287	29	16	25	28	1.97
47166715--47166987	75	3.6	75	90	3	390	34	26	16	22	1.95
47168952--47169023	26	2.8	26	81	6	76	33	13	6	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47170609--47170634	11	2.4	11	100	0	52	50	7	42	0	1.31
47177894--47178312	138	3.1	136	88	2	626	41	7	5	45	1.56
47188807--47188853	23	2.0	23	87	0	67	23	8	21	46	1.78
47188816--47188867	23	2.3	23	83	6	61	26	5	19	48	1.71
47196700--47196912	38	5.6	38	88	0	255	36	30	17	15	1.91
47196700--47196915	114	1.9	114	84	1	290	37	30	17	14	1.90
47203859--47203975	38	3.1	38	89	0	171	39	29	16	14	1.88
47208193--47208221	3	9.7	3	100	0	58	68	0	0	31	0.89
47209864--47209957	18	5.0	20	83	6	83	40	0	3	56	1.15
47209868--47209942	36	2.1	36	85	5	98	41	0	2	56	1.13
47210591--47210657	32	2.1	32	81	10	75	37	7	4	50	1.51
47211658--47211734	30	2.6	28	78	9	82	61	3	1	33	1.23
47212029--47212140	9	11.7	9	68	12	62	33	2	0	62	1.15
47212064--47212122	29	2.0	29	83	6	75	42	1	0	55	1.09
47214042--47214071	13	2.2	14	94	5	53	20	0	0	80	0.72
47214193--47214233	6	7.0	6	94	5	75	17	0	0	82	0.66
47214862--47214892	16	2.0	15	93	6	53	70	0	29	0	0.87
47214989--47215076	13	6.8	12	81	11	95	77	0	22	0	0.77
47214990--47215075	25	3.4	25	80	16	99	76	0	23	0	0.78
47215016--47215068	7	7.9	7	78	4	56	77	0	22	0	0.77
47214984--47215070	44	2.0	44	82	8	106	74	0	25	0	0.82
47215404--47215442	13	3.0	12	85	14	51	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47215886--47215934	18	2.7	19	81	18	68	26	14	12	46	1.79
47215993--47216043	15	3.1	15	82	17	66	25	13	11	49	1.76
47215993--47216398	18	24.1	18	65	20	139	30	13	10	45	1.76
47216025--47216076	26	2.0	26	92	7	88	30	13	7	48	1.71
47216003--47216131	44	3.1	44	78	18	150	31	13	6	48	1.68
47216088--47216430	18	20.3	17	68	12	145	32	13	10	43	1.77
47216007--47216146	44	3.6	39	78	16	107	32	12	7	47	1.68
47216173--47216299	64	2.0	65	84	4	168	35	12	11	40	1.79
47216241--47216431	17	11.3	17	69	11	90	33	11	10	43	1.76
47227381--47227414	10	3.4	10	95	0	59	91	5	2	0	0.51
47228267--47228763	74	6.5	77	88	5	642	28	15	20	35	1.93
47229067--47229113	6	8.0	6	95	4	87	17	0	0	82	0.66
47229181--47229319	30	4.7	29	77	13	115	29	20	7	42	1.79
47229869--47229963	13	7.8	12	76	16	90	77	0	22	0	0.76
47229867--47229963	14	6.9	14	73	18	76	77	0	22	0	0.77
47229870--47229963	25	4.0	24	80	16	108	77	0	22	0	0.77
47229896--47229955	7	8.9	7	81	3	70	78	0	21	0	0.75
47229896--47229962	33	2.1	32	88	8	100	79	0	20	0	0.74
47230749--47230799	20	2.6	20	71	3	59	49	9	7	33	1.65
47230769--47230827	30	1.9	31	89	3	93	50	11	5	32	1.61
47230864--47231255	18	23.2	18	68	17	175	29	14	9	46	1.76
47230850--47231254	17	24.1	17	66	22	109	28	14	10	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47230882--47230933	26	2.0	26	88	7	79	28	13	9	48	1.74
47230864--47231004	44	3.6	39	78	14	123	31	12	7	48	1.69
47231008--47231256	99	2.5	100	74	12	233	28	14	11	46	1.78
47231227--47231291	34	1.9	34	83	0	85	41	7	7	43	1.62
47236134--47236166	17	2.0	17	88	5	50	39	18	15	27	1.90
47237362--47237403	21	1.9	22	85	9	59	42	9	2	45	1.49
47239577--47239621	22	2.1	21	87	4	63	17	2	11	68	1.29
47240201--47240241	16	2.6	16	88	0	55	34	0	7	58	1.26
47240201--47240249	16	3.1	16	84	0	53	32	0	10	57	1.32
47246451--47246475	12	2.1	12	100	0	50	40	0	0	60	0.97
47249104--47249144	21	2.0	22	90	9	68	63	7	21	7	1.45
47260518--47260740	40	5.6	40	86	3	236	24	21	27	26	1.99
47260593--47260775	79	2.3	80	82	1	226	25	20	27	25	1.99
47277207--47277375	40	4.3	40	89	2	207	24	20	28	26	1.99
47277154--47277377	80	2.8	79	82	4	245	24	20	28	26	1.99
47277229--47277410	78	2.3	80	80	3	217	25	20	28	25	1.99
47284412--47284653	50	4.7	50	79	4	191	28	20	26	24	1.99
47294246--47294343	30	3.2	30	72	5	99	29	15	26	28	1.96
47295107--47295151	11	3.7	11	88	11	54	73	2	11	13	1.19
47297365--47297417	17	3.2	16	81	7	61	73	3	13	9	1.21
47307815--47308054	41	5.8	40	88	1	273	21	21	28	29	1.98
47307815--47308054	123	2.0	123	84	3	313	21	21	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47308130--47308196	21	3.2	20	69	21	55	55	0	13	31	1.39
47308441--47308470	14	2.2	14	94	5	53	26	0	26	46	1.53
47308488--47308541	21	2.5	21	77	14	65	18	0	44	37	1.50
47308495--47308531	7	5.3	7	86	0	56	16	0	54	29	1.43
47308706--47308752	14	3.3	14	90	3	58	4	0	53	42	1.20
47308706--47308752	21	2.2	22	88	3	69	4	0	53	42	1.20
47309856--47309920	21	3.0	22	76	13	73	24	49	3	23	1.64
47315348--47315664	43	7.4	43	85	3	361	21	16	29	31	1.95
47315304--47315663	129	2.8	127	82	5	406	21	16	29	31	1.96
47317595--47317686	26	3.5	27	79	7	91	19	27	25	28	1.99
47327997--47328187	51	3.8	51	77	10	203	31	27	16	24	1.96
47327995--47328179	101	1.8	102	89	5	295	31	27	17	24	1.97
47327990--47328213	101	2.2	102	82	5	276	30	28	16	25	1.96
47330906--47331022	58	2.0	58	81	0	135	50	13	8	27	1.71
47330826--47332193	446	3.0	442	85	6	2011	40	14	13	32	1.84
47331264--47332309	470	2.2	471	89	1	1576	40	13	12	32	1.83
47331880--47332737	427	2.0	427	92	0	1414	40	13	12	32	1.83
47334917--47334941	10	2.5	10	100	0	50	0	12	0	88	0.53
47343572--47343693	39	3.1	39	75	9	124	29	16	21	32	1.95
47346404--47346467	35	1.9	32	84	9	83	48	0	4	46	1.23
47346451--47346491	5	8.4	5	94	5	75	41	0	0	58	0.98
47347453--47347556	25	4.4	25	78	8	85	15	23	22	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47347502--47347557	22	2.5	22	80	13	62	14	23	21	41	1.89
47351136--47351200	35	1.9	33	84	6	85	47	0	4	47	1.22
47351183--47351244	5	12.4	5	100	0	124	40	0	0	59	0.97
47352206--47352290	25	3.4	25	90	0	125	17	22	22	37	1.94
47354288--47354313	13	2.0	13	100	0	52	53	0	0	46	1.00
47354516--47354626	5	22.6	5	84	9	140	42	0	0	55	1.12
47360563--47360629	17	3.7	17	70	25	57	28	1	23	46	1.61
47360534--47360669	39	3.5	39	89	2	186	29	3	22	44	1.70
47363053--47363104	17	2.9	17	81	16	61	61	3	1	32	1.25
47363040--47363098	27	2.2	26	80	14	68	64	1	1	32	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230