genome.fa.s19.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  148  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43576613--43576641	14	2.1	14	100	0	58	72	6	6	13	1.26
43577354--43577387	15	2.3	15	89	0	50	35	29	32	2	1.73
43583020--43583060	15	2.7	16	74	11	50	7	26	0	65	1.18
43585213--43585271	13	4.4	13	78	14	66	72	6	5	15	1.23
43585231--43585262	17	1.9	17	93	6	57	59	6	9	25	1.52
43585213--43585281	12	5.4	12	73	21	52	72	7	5	14	1.25
43585309--43585347	10	3.8	10	82	3	51	84	2	10	2	0.81
43585308--43585347	20	2.0	21	90	5	64	82	2	10	5	0.91
43586366--43586399	18	1.9	18	88	5	52	52	2	35	8	1.47
43589574--43589644	30	2.4	30	81	11	85	9	11	2	76	1.13
43589577--43589646	31	2.3	31	83	14	92	10	11	2	75	1.14
43589690--43589736	13	3.5	13	82	5	67	14	2	4	78	0.99
43600964--43601053	46	2.0	42	85	8	117	25	17	22	34	1.96
43619398--43619437	16	2.5	16	87	0	62	35	7	30	27	1.84
43619551--43619625	27	2.8	27	79	6	80	54	2	0	42	1.14
43619591--43619624	17	2.0	17	100	0	68	58	0	0	41	0.98
43619605--43619805	61	3.3	61	73	12	216	51	5	0	41	1.31
43619571--43619842	120	2.3	120	97	0	510	52	4	0	42	1.26
43619828--43619924	49	2.0	49	86	6	135	51	10	7	30	1.63
43623317--43623344	14	2.0	14	100	0	56	28	7	21	42	1.79
43627139--43627259	39	3.1	39	93	0	197	33	34	17	14	1.90
43636594--43636698	27	3.9	27	78	2	113	14	10	33	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43642216--43642495	43	6.5	43	89	0	425	25	21	22	31	1.98
43642216--43642565	129	2.7	129	84	4	341	26	22	20	30	1.98
43642216--43642565	86	4.1	86	86	2	301	26	22	20	30	1.98
43642858--43642903	21	2.2	21	88	0	65	4	45	13	36	1.63
43645292--43645346	22	2.5	23	76	5	60	32	7	18	41	1.78
43650430--43650487	22	2.7	21	73	7	62	32	6	18	41	1.78
43655596--43656114	84	6.2	83	78	4	468	35	16	16	30	1.92
43656643--43656667	7	3.6	7	100	0	50	16	56	0	28	1.41
43656663--43656740	7	11.0	7	73	13	52	38	39	1	20	1.61
43656678--43656735	21	2.7	21	81	7	64	37	43	0	18	1.51
43657126--43657222	40	2.4	40	89	1	149	28	21	20	28	1.98
43657267--43657359	40	2.3	40	83	0	132	24	23	19	32	1.98
43659719--43659811	12	7.4	11	73	18	60	47	9	18	24	1.78
43659713--43659812	28	3.9	24	83	10	101	47	9	18	26	1.78
43659746--43659812	12	4.9	14	74	20	70	49	10	17	22	1.77
43659734--43659837	28	3.8	28	91	2	149	47	10	16	25	1.79
43659746--43659825	16	5.6	16	73	19	63	50	11	16	22	1.76
43659816--43659843	12	2.3	12	100	0	56	39	10	14	35	1.81
43660341--43660381	21	2.0	21	95	0	73	36	0	0	63	0.95
43662555--43662584	15	1.9	16	93	6	53	50	0	0	50	1.00
43662709--43662940	98	2.3	98	88	5	331	28	1	15	54	1.50
43662863--43663016	80	1.9	80	87	7	224	30	0	14	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43662933--43663484	197	2.7	207	85	8	715	30	0	14	53	1.46
43662933--43663485	99	5.4	103	78	13	599	30	0	14	53	1.46
43663183--43663502	111	3.0	109	80	9	378	29	0	13	55	1.44
43667560--43667598	17	2.3	17	86	0	51	53	10	5	30	1.56
43668411--43668550	41	3.4	41	92	2	235	22	25	24	28	1.99
43669224--43669264	21	2.0	21	85	0	55	21	2	36	39	1.67
43669212--43669281	29	2.4	30	79	13	83	20	1	41	37	1.61
43669213--43669281	14	4.8	14	73	10	59	20	1	40	37	1.61
43669232--43669281	21	2.4	22	80	6	59	22	2	40	36	1.65
43669373--43669434	21	2.9	21	77	13	65	24	0	37	38	1.56
43670189--43670221	12	2.9	12	86	13	52	51	0	6	42	1.26
43670190--43670249	10	5.8	10	78	11	59	51	0	5	43	1.23
43670184--43670255	30	2.4	29	80	11	83	48	1	4	45	1.30
43671774--43671891	59	2.0	57	95	3	209	22	18	10	49	1.77
43674978--43675065	42	2.1	42	82	4	106	25	15	23	35	1.95
43675011--43675281	43	6.3	43	82	4	318	21	18	30	30	1.96
43675011--43675281	129	2.1	127	85	3	382	21	18	30	30	1.96
43678174--43678232	20	3.0	20	82	7	68	35	8	10	45	1.68
43681658--43681733	21	3.5	21	80	7	80	39	21	22	17	1.92
43682809--43682866	30	2.0	28	86	6	80	5	24	3	67	1.27
43684223--43684293	23	3.0	24	85	6	101	22	19	21	36	1.95
43684226--43684332	23	5.0	21	77	7	99	18	20	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43690603--43690876	137	2.0	137	96	0	503	40	14	6	39	1.72
43694498--43694527	15	1.9	16	93	6	53	6	33	6	53	1.53
43703801--43703841	13	3.4	13	74	19	52	48	14	0	36	1.44
43703799--43703850	23	2.3	23	93	3	88	48	13	0	38	1.43
43707015--43707039	12	2.1	12	100	0	50	0	8	48	44	1.32
43709719--43709757	21	1.9	21	89	5	62	46	10	5	38	1.60
43711005--43711050	22	2.0	22	87	8	65	34	17	2	45	1.61
43711285--43711362	25	3.2	25	80	12	81	34	19	23	23	1.96
43716596--43716780	40	4.7	39	81	10	207	25	27	23	23	2.00
43716596--43716780	79	2.3	80	81	9	218	25	27	23	23	2.00
43724559--43724743	79	2.3	81	82	7	218	25	27	22	23	2.00
43724559--43724743	40	4.7	40	80	10	200	25	27	22	23	2.00
43737542--43737577	17	2.1	18	89	5	56	63	5	22	8	1.43
43744580--43744764	40	4.7	40	79	9	152	24	23	25	25	2.00
43744580--43744764	79	2.3	80	81	9	209	24	23	25	25	2.00
43752709--43752893	40	4.7	40	80	6	164	24	22	25	26	2.00
43752709--43752893	79	2.3	80	80	9	200	24	22	25	26	2.00
43754510--43754559	17	2.8	18	78	9	57	22	0	10	68	1.19
43773559--43773663	54	1.9	54	84	7	142	43	23	16	16	1.87
43773568--43773664	27	3.6	26	85	9	124	41	23	17	17	1.90
43773291--43773989	370	1.9	369	91	0	1148	31	20	24	22	1.98
43773938--43773991	27	2.0	27	96	0	99	42	22	16	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43774155--43774231	26	3.0	26	81	7	84	19	16	25	37	1.93
43781675--43781772	27	3.7	27	79	6	101	39	22	17	20	1.92
43782234--43782283	20	2.5	20	90	0	82	30	34	20	16	1.94
43783477--43783511	12	2.9	12	86	0	52	37	11	2	48	1.54
43792054--43792277	40	5.7	40	82	9	239	25	27	22	25	2.00
43799926--43800149	39	5.7	40	82	9	230	24	26	22	26	2.00
43813510--43813774	40	6.7	40	86	6	285	24	27	21	26	2.00
43813510--43813721	79	2.7	80	88	5	288	25	26	21	25	2.00
43813510--43813774	119	2.2	122	81	10	307	24	27	21	26	2.00
43821517--43821739	79	2.8	78	82	9	265	24	27	22	25	2.00
43821517--43821739	39	5.7	40	86	8	266	24	27	22	25	2.00
43829494--43829716	79	2.8	78	82	9	265	24	27	22	25	2.00
43829494--43829716	39	5.7	40	86	8	266	24	27	22	25	2.00
43837032--43837347	169	1.9	166	90	4	510	31	24	14	29	1.95
43837299--43837377	29	2.7	29	77	16	92	30	30	12	26	1.93
43840304--43840344	21	1.9	22	85	14	59	36	2	26	34	1.70
43843872--43844053	40	4.6	39	71	13	131	27	26	20	25	1.99
43843903--43844002	39	2.6	39	85	6	123	29	27	20	24	1.99
43855295--43855519	79	2.8	79	77	10	226	24	25	22	27	2.00
43855295--43855519	40	5.7	40	80	11	207	24	25	22	27	2.00
43859153--43859186	17	2.0	17	94	0	59	29	32	11	26	1.92
43865580--43865682	40	2.6	40	77	0	107	22	30	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43866145--43866264	56	2.1	56	100	0	240	45	9	22	22	1.80
43875015--43875165	50	2.9	50	87	5	185	26	20	31	21	1.98
43875467--43875505	20	2.0	20	89	0	60	53	2	25	17	1.56
43882110--43882302	50	3.7	50	80	6	190	26	22	27	23	2.00
43883835--43884080	40	6.1	40	85	3	316	19	29	18	32	1.95
43883835--43884080	80	3.1	79	88	2	350	19	29	18	32	1.95
43883972--43884035	20	3.2	20	65	0	56	15	34	17	32	1.91
43886135--43886208	20	3.7	20	87	0	94	9	31	22	36	1.86
43890880--43891059	50	3.5	50	80	4	171	26	22	28	22	1.99
43895399--43895439	18	2.3	18	100	0	82	24	4	31	39	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230