genome.fa.s19.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  153  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45150020--45150475	50	9.1	49	66	8	213	31	20	23	24	1.98
45150601--45150698	44	2.2	45	85	1	126	30	14	26	28	1.95
45151756--45151830	26	2.9	27	76	11	75	32	12	1	54	1.45
45165530--45165698	84	2.0	85	92	1	286	44	8	13	33	1.75
45171267--45171306	16	2.5	16	83	0	53	52	12	20	15	1.74
45172639--45172692	25	2.2	25	82	0	63	33	9	14	42	1.78
45176024--45176067	23	1.9	22	82	17	54	36	25	0	38	1.56
45176112--45176200	45	2.0	45	95	0	160	34	24	15	24	1.95
45176211--45176347	51	2.7	51	81	4	168	32	27	17	23	1.97
45179826--45179906	39	2.1	39	95	0	144	39	12	17	30	1.86
45182004--45182151	41	3.6	41	91	0	226	22	20	25	31	1.98
45182004--45182170	82	2.1	80	86	4	228	23	20	24	31	1.98
45187232--45187276	22	2.0	22	83	8	56	26	6	31	35	1.82
45188467--45188654	41	4.6	41	84	2	236	27	19	23	29	1.98
45188467--45188654	81	2.3	82	84	1	236	27	19	23	29	1.98
45195007--45195052	23	2.0	22	84	16	58	45	2	26	26	1.65
45196206--45196339	23	6.0	23	82	10	152	18	19	22	39	1.92
45196208--45196340	46	3.0	45	85	5	180	19	18	22	39	1.93
45199869--45199918	23	2.1	25	85	7	68	48	4	24	24	1.68
45200957--45200996	20	2.0	21	85	5	55	32	40	10	17	1.83
45205699--45205756	18	3.1	18	79	15	64	58	0	1	39	1.08
45205710--45205752	10	4.3	10	82	8	52	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45205862--45205905	11	4.2	11	85	5	56	34	0	4	61	1.16
45236385--45236419	17	2.1	17	88	0	52	71	2	8	17	1.23
45238763--45238804	12	3.5	12	84	12	59	54	0	9	35	1.33
45240280--45241699	132	10.8	132	88	5	1801	28	24	19	28	1.98
45240545--45240867	43	7.4	43	65	11	133	26	26	18	28	1.98
45240374--45241230	44	19.5	44	62	11	193	27	24	19	28	1.98
45240280--45241699	393	3.6	393	87	4	1882	28	24	19	28	1.98
45246651--45246681	16	1.9	16	93	0	53	32	22	19	25	1.97
45248634--45248675	12	3.5	12	84	12	59	54	0	9	35	1.33
45249224--45249275	10	5.0	11	79	9	56	78	5	7	7	1.08
45249225--45249275	21	2.5	20	87	6	66	80	3	7	7	1.01
45254920--45255112	96	2.0	96	98	0	377	29	12	7	50	1.68
45255559--45255608	19	2.6	19	78	9	57	24	2	8	66	1.29
45255713--45255755	22	2.0	22	90	0	68	9	18	27	44	1.80
45256434--45256461	8	3.5	8	100	0	56	53	10	14	21	1.70
45257461--45257906	194	2.3	194	82	2	538	39	17	13	28	1.88
45259183--45259220	16	2.4	16	95	0	67	34	21	5	39	1.76
45261424--45261473	22	2.2	23	89	3	75	34	48	0	18	1.48
45261424--45261507	7	10.9	8	73	17	63	33	46	1	19	1.57
45261445--45261507	16	3.9	16	91	0	108	30	49	1	19	1.58
45261783--45261944	74	2.2	73	89	1	252	28	25	20	25	1.99
45261857--45262506	114	5.8	114	86	4	861	27	25	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45263023--45263105	44	1.9	42	83	9	105	67	6	0	26	1.13
45264444--45264793	123	2.8	124	92	1	587	30	15	22	32	1.95
45267905--45267929	10	2.5	10	100	0	50	48	0	8	44	1.32
45267913--45268093	55	3.3	55	98	0	353	44	4	12	38	1.64
45268088--45268862	29	26.3	29	80	14	678	27	1	27	44	1.63
45268088--45268862	59	13.1	58	82	11	852	27	1	27	44	1.63
45268088--45268862	88	8.8	88	83	10	958	27	1	27	44	1.63
45268128--45268272	72	2.0	72	93	4	247	23	2	31	42	1.66
45268378--45268460	23	3.3	23	90	10	112	27	0	26	45	1.54
45268868--45269052	71	2.6	71	91	2	291	44	12	3	39	1.59
45269454--45269488	18	1.9	18	88	0	52	31	8	34	25	1.86
45270140--45270164	7	3.6	7	100	0	50	60	12	0	28	1.32
45270880--45270940	30	2.0	30	100	0	122	29	19	26	24	1.99
45271132--45271194	22	2.8	22	73	9	65	55	6	0	38	1.25
45271259--45271323	30	2.2	30	100	0	130	67	0	0	32	0.91
45271338--45271424	44	2.0	44	95	0	156	41	0	24	34	1.55
45276601--45276788	45	4.2	44	80	11	195	20	17	14	48	1.81
45279050--45279101	21	2.5	21	79	14	63	55	1	3	38	1.29
45280480--45280645	28	6.0	28	78	7	155	23	13	5	57	1.57
45280927--45281000	34	2.2	33	79	13	80	27	16	16	40	1.89
45289081--45289119	13	2.9	14	80	7	53	61	7	30	0	1.24
45294506--45294879	90	4.1	90	91	1	588	30	21	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45294588--45294823	43	5.3	43	69	7	175	27	22	27	22	1.99
45304103--45304192	39	2.3	39	86	0	126	26	46	7	18	1.76
45311807--45311838	15	2.1	15	100	0	64	62	0	18	18	1.33
45313047--45313078	6	5.3	6	96	0	55	3	28	0	68	1.04
45323785--45323849	20	3.3	20	68	12	53	40	20	30	9	1.83
45323823--45323889	20	3.3	20	73	8	64	44	14	26	13	1.83
45327937--45327983	22	2.1	22	100	0	94	29	17	4	48	1.65
45334839--45334893	28	2.0	27	82	6	67	54	1	1	41	1.21
45336372--45336401	13	2.3	13	94	0	51	30	6	6	56	1.51
45337016--45337194	85	2.1	85	98	0	349	37	8	27	26	1.85
45338456--45338579	49	2.5	49	93	5	207	33	7	27	31	1.84
45338542--45338599	29	2.0	29	100	0	116	34	3	27	34	1.74
45338495--45338653	76	2.1	75	92	4	266	34	5	27	32	1.80
45338573--45339036	47	9.7	47	92	2	673	33	8	29	28	1.87
45338573--45339036	96	4.9	94	89	3	673	33	8	29	28	1.87
45338887--45339008	22	5.3	22	62	21	61	33	12	28	25	1.92
45341465--45341539	38	2.0	38	86	5	107	30	18	26	24	1.98
45341593--45341991	40	10.1	40	91	1	588	24	20	28	26	1.99
45341593--45341991	79	5.0	79	91	1	593	24	20	28	26	1.99
45341593--45341991	119	3.4	119	91	1	622	24	20	28	26	1.99
45343247--45343425	85	2.1	85	97	0	340	37	8	27	26	1.85
45344690--45344813	49	2.5	49	93	5	207	33	7	27	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45344776--45344833	29	2.0	29	100	0	116	34	3	27	34	1.74
45344729--45344887	76	2.1	75	92	4	266	34	5	27	32	1.80
45344807--45345252	47	9.7	47	81	12	470	33	8	28	29	1.87
45344690--45345063	125	3.0	122	90	6	567	34	7	27	31	1.84
45344690--45345252	174	3.2	176	83	9	607	33	8	28	29	1.86
45344962--45345231	143	1.9	141	91	4	445	32	10	30	26	1.90
45352816--45352849	16	2.2	15	89	5	50	41	0	2	55	1.15
45359252--45359754	47	10.6	47	91	2	772	33	7	29	29	1.86
45359252--45359754	96	5.3	94	92	1	772	33	7	29	29	1.86
45359252--45359754	143	3.5	141	91	2	772	33	7	29	29	1.86
45361143--45361211	27	2.6	27	90	0	102	30	28	14	26	1.95
45361143--45361224	27	3.0	26	77	13	67	31	26	13	28	1.94
45373567--45373677	43	2.6	44	90	4	165	33	26	18	22	1.96
45378235--45378305	7	10.1	7	87	0	79	28	46	0	25	1.53
45378497--45378539	20	2.2	20	87	8	61	39	41	0	18	1.51
45378490--45378533	13	3.4	12	82	14	52	40	38	0	20	1.53
45378436--45378599	88	1.8	90	83	7	219	45	26	0	28	1.58
45378681--45378713	14	2.3	15	94	5	59	36	33	0	30	1.58
45379097--45379257	41	3.9	41	84	3	180	28	29	18	23	1.98
45379330--45379417	40	2.2	39	80	9	97	21	22	20	35	1.96
45393615--45393765	27	5.6	27	92	1	230	27	13	28	30	1.94
45393615--45393765	82	1.9	81	90	1	239	27	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45393615--45393765	55	2.8	54	91	1	230	27	13	28	30	1.94
45399190--45399368	27	6.6	27	92	2	277	27	13	28	30	1.94
45399190--45399368	55	3.3	55	92	0	279	27	13	28	30	1.94
45399190--45399368	82	2.2	82	90	2	279	27	13	28	30	1.94
45411918--45413219	659	2.0	657	93	0	2257	26	24	15	34	1.95
45435365--45435465	49	2.1	49	88	0	148	45	10	7	35	1.69
45442573--45442942	187	2.0	186	90	0	587	42	12	17	26	1.86
45444381--45444426	18	2.5	19	75	10	51	45	4	2	47	1.34
45445780--45445861	28	2.9	28	80	3	94	37	23	13	25	1.91
45447891--45447963	9	8.2	9	92	1	103	21	12	27	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230