genome.fa.s23.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  101  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29308022--29308173	47	3.4	46	75	13	147	30	32	14	22	1.94
29312739--29312809	36	2.0	36	100	0	142	30	19	16	32	1.95
29314195--29314271	36	2.1	36	97	0	145	36	0	15	48	1.46
29321657--29321833	41	4.4	41	87	0	223	14	24	19	41	1.88
29321657--29321833	81	2.2	81	85	2	230	14	24	19	41	1.88
29323080--29323110	16	1.9	16	93	0	53	51	0	0	48	1.00
29324426--29324481	22	2.8	21	78	10	55	66	3	1	28	1.19
29328710--29328770	17	3.6	17	77	0	68	75	4	0	19	0.98
29329363--29329420	22	2.7	21	79	10	62	43	15	5	36	1.69
29329378--29329420	22	1.9	22	90	4	68	41	13	6	37	1.72
29329376--29329473	19	4.8	19	83	13	106	37	16	9	36	1.80
29329409--29329473	19	3.3	20	93	6	107	35	18	9	36	1.83
29329402--29329483	19	4.3	18	86	8	67	36	17	10	35	1.85
29329776--29330288	173	2.9	176	81	7	489	27	22	20	29	1.99
29330003--29330288	89	3.3	89	76	10	336	26	23	21	27	1.99
29329818--29330465	44	14.9	43	71	15	354	26	23	20	29	1.99
29330089--29330369	84	3.3	83	75	10	271	27	23	20	28	1.99
29330003--29330374	173	2.2	173	89	1	559	27	22	20	28	1.99
29329818--29330465	217	3.0	216	83	8	692	26	23	20	29	1.99
29330003--29330456	173	2.6	173	84	5	519	26	23	20	28	1.99
29330448--29330860	132	3.1	132	91	0	664	25	24	19	30	1.98
29332120--29332160	22	1.9	21	85	14	57	7	17	0	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29344367--29346222	928	2.0	928	98	0	3568	29	20	24	25	1.99
29347085--29347219	41	3.3	41	89	0	216	25	27	17	29	1.98
29347395--29347489	41	2.3	41	98	0	181	23	27	21	28	1.99
29350995--29351196	23	8.8	23	93	0	332	27	6	21	44	1.77
29351198--29351405	25	8.8	24	68	21	127	47	12	0	40	1.41
29351223--29351472	71	3.6	71	91	5	420	48	12	0	40	1.40
29351418--29351479	25	2.5	25	81	0	70	45	14	0	40	1.45
29351432--29351480	25	2.0	25	88	8	73	38	18	0	42	1.50
29352588--29352619	7	4.6	7	100	0	64	59	12	0	28	1.34
29353732--29353857	51	2.5	51	84	2	182	45	0	23	30	1.59
29353835--29353874	11	3.6	11	86	0	62	52	0	30	17	1.45
29355606--29355658	19	3.0	17	78	10	61	35	9	18	35	1.84
29355630--29355674	23	2.0	23	91	4	74	37	4	17	40	1.70
29355640--29355684	23	2.0	23	86	4	65	33	4	15	46	1.66
29361653--29361686	17	1.9	17	88	5	50	47	0	8	44	1.34
29367317--29367344	2	14.0	2	100	0	56	50	0	50	0	1.00
29369880--29369928	24	2.1	23	84	3	62	53	6	2	38	1.38
29375023--29375048	13	2.0	13	100	0	52	46	15	7	30	1.74
29380163--29380190	3	9.3	3	100	0	56	64	0	0	35	0.94
29380564--29380617	20	2.8	19	83	5	72	33	0	0	66	0.92
29381958--29382032	31	2.4	32	84	6	100	38	13	6	41	1.70
29388485--29388514	15	2.0	15	93	0	51	30	0	10	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29399399--29399445	18	2.6	18	80	6	51	40	19	2	38	1.63
29405891--29405933	21	2.0	22	90	4	70	44	34	4	16	1.68
29407523--29407570	10	4.9	10	80	14	55	35	6	0	58	1.23
29410227--29410312	41	2.1	41	100	0	172	39	16	22	22	1.92
29411629--29411731	31	3.2	32	75	13	97	68	8	6	15	1.36
29412563--29412605	9	4.7	9	82	5	59	88	0	9	2	0.60
29412562--29412605	19	2.3	19	92	0	70	88	0	9	2	0.59
29412565--29412620	17	3.7	16	79	13	57	82	0	12	5	0.83
29414293--29414511	44	4.8	44	71	14	172	32	18	21	27	1.96
29414289--29414644	142	2.5	142	94	0	615	32	18	21	27	1.96
29416558--29416605	10	4.9	10	80	14	55	35	6	0	58	1.23
29417745--29417807	25	2.5	25	84	5	74	31	17	14	36	1.90
29418136--29418188	18	2.9	17	80	5	61	37	18	1	41	1.62
29423574--29423614	19	2.2	19	91	4	66	29	4	0	65	1.13
29423581--29423620	19	2.2	19	86	4	55	35	2	0	62	1.09
29438141--29438179	20	1.9	21	84	5	53	35	10	15	38	1.81
29439051--29439106	22	2.5	22	76	0	58	39	19	7	33	1.79
29441913--29441965	28	2.0	26	82	14	63	60	3	1	33	1.26
29442796--29442833	14	2.7	14	91	0	58	47	13	15	23	1.81
29444469--29444843	44	8.2	44	73	10	189	29	19	17	34	1.94
29444623--29444843	88	2.5	88	78	7	216	28	20	17	33	1.95
29456512--29456541	5	6.2	5	92	7	53	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29456500--29456541	14	2.8	14	86	13	57	78	0	2	19	0.86
29458850--29458950	42	2.4	43	83	1	132	33	28	15	21	1.95
29458884--29459014	67	1.9	68	80	7	151	33	29	12	24	1.93
29464359--29464399	21	1.9	22	85	5	57	39	39	0	21	1.54
29464591--29464632	16	2.5	17	92	7	68	45	0	0	54	0.99
29464739--29464802	21	3.0	21	82	11	76	35	42	0	21	1.54
29464783--29464963	14	12.9	14	65	15	52	45	28	1	24	1.60
29464880--29464930	22	2.3	23	77	16	63	45	25	1	27	1.64
29465223--29465268	20	2.4	20	82	7	51	63	4	4	28	1.33
29465275--29465465	41	4.7	41	83	2	233	30	27	23	19	1.98
29468107--29468149	14	3.1	14	82	0	50	65	0	0	34	0.93
29468112--29468159	22	2.2	22	85	7	62	64	0	0	35	0.94
29468212--29468266	7	7.9	7	100	0	110	72	14	0	12	1.12
29469607--29469656	24	2.0	25	84	3	66	64	4	0	32	1.12
29469714--29469747	7	4.9	7	88	0	50	73	8	0	17	1.08
29469715--29469747	14	2.4	14	100	0	66	75	6	0	18	1.00
29471121--29471160	20	2.0	20	85	9	55	62	0	0	37	0.95
29472569--29472615	20	2.4	20	89	3	69	68	0	0	31	0.90
29472585--29472627	19	2.3	18	81	14	52	62	0	0	37	0.95
29482184--29482231	24	2.0	25	84	12	64	47	2	6	43	1.40
29485131--29485177	21	2.2	22	92	3	78	21	19	38	21	1.94
29489298--29489367	35	2.2	30	85	14	88	25	10	15	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29490579--29490635	21	2.8	21	94	2	98	26	14	14	45	1.82
29490710--29490753	20	2.2	20	91	0	70	29	6	13	50	1.68
29494749--29494868	40	3.0	40	97	0	222	50	15	20	15	1.79
29495576--29495619	18	2.3	20	76	11	56	18	15	38	27	1.91
29497252--29497419	50	3.2	49	78	9	149	28	19	27	25	1.98
29497704--29497774	32	2.2	32	100	0	142	52	2	29	15	1.57
29497705--29497757	16	3.3	16	70	19	56	50	1	30	16	1.56
29497721--29497773	16	3.3	16	70	19	56	50	3	30	15	1.61
29504640--29504677	13	2.7	14	84	12	51	39	7	0	52	1.31
29511598--29511645	22	2.2	22	92	3	80	6	8	22	62	1.46
29511609--29511647	11	3.5	11	78	0	51	7	12	20	58	1.58
29521254--29521295	15	2.8	15	85	7	50	57	2	9	30	1.44
29527502--29527534	13	2.5	13	95	0	57	33	39	0	27	1.57
29529131--29529172	17	2.6	16	85	10	59	73	2	7	16	1.15
29537621--29537670	24	2.1	24	100	0	100	38	22	20	20	1.94
29538780--29538834	22	2.5	22	96	0	101	60	25	3	10	1.47
29554226--29554389	29	5.6	29	77	11	165	21	26	13	37	1.91
29554226--29554410	58	3.2	58	81	9	207	22	26	12	38	1.90
29559048--29559091	14	3.1	15	90	6	65	0	29	4	65	1.12
29580738--29580767	4	7.2	4	96	3	51	26	0	0	73	0.84
29581087--29581119	17	2.0	17	88	5	50	60	18	0	21	1.36
29583448--29583494	21	2.2	22	92	3	78	21	38	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29588540--29588581	22	1.9	22	85	0	57	45	11	19	23	1.83
29588598--29588747	32	4.7	32	83	9	166	36	23	21	19	1.95
29588750--29588803	26	2.1	26	85	0	72	37	24	20	18	1.94
29588785--29588850	27	2.5	26	80	9	71	33	24	24	18	1.97
29588998--29589279	27	10.5	27	83	4	252	26	21	17	34	1.95
29588998--29589279	54	5.3	54	80	5	288	26	21	17	34	1.95
29594859--29595055	76	2.5	77	86	6	263	26	26	20	26	1.99
29594842--29595102	40	6.7	40	83	8	283	26	27	21	24	2.00
29602747--29602931	79	2.3	81	83	9	229	25	27	22	24	2.00
29602747--29602931	40	4.7	40	80	12	211	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228