genome.fa.s23.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  140  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42054323--42054368	16	2.9	16	93	3	76	50	6	0	43	1.28
42054365--42054400	13	2.8	13	91	0	54	55	2	8	33	1.44
42055290--42055330	15	2.6	16	84	11	57	51	9	0	39	1.35
42055296--42055330	15	2.2	16	95	5	63	51	11	0	37	1.38
42057100--42057137	16	2.5	15	87	8	58	89	2	7	0	0.57
42057108--42057135	8	3.5	8	100	0	56	89	0	10	0	0.49
42061346--42061629	39	7.3	39	83	3	311	11	29	31	27	1.91
42061367--42061629	117	2.2	117	85	4	352	12	30	31	25	1.92
42063819--42063866	15	3.5	15	72	21	59	50	6	0	43	1.27
42063813--42063866	26	2.0	27	92	3	92	46	7	0	46	1.31
42073833--42075776	649	3.0	649	98	0	3799	40	12	18	28	1.87
42080513--42080673	41	4.0	41	83	7	168	33	27	19	19	1.96
42081317--42081351	17	2.1	17	89	5	54	31	14	5	48	1.67
42084256--42084323	33	2.1	33	94	0	118	16	25	14	44	1.85
42084264--42084344	33	2.8	28	85	11	92	16	22	12	49	1.78
42088448--42088510	20	3.3	20	69	13	69	31	4	14	49	1.64
42088457--42088517	17	3.4	17	70	12	59	31	3	14	50	1.59
42088452--42088526	37	2.0	37	97	0	141	32	6	16	45	1.73
42088528--42088607	9	8.9	9	88	0	115	32	10	22	35	1.87
42088973--42089006	15	2.3	15	94	0	59	14	0	2	82	0.79
42095260--42095343	25	2.8	32	67	23	83	48	5	3	41	1.45
42095379--42095403	11	2.3	11	100	0	50	20	24	0	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42098823--42098917	44	2.2	44	82	1	120	34	22	11	31	1.90
42101601--42101681	42	1.9	42	85	5	110	58	2	4	34	1.33
42101685--42101731	19	2.6	18	80	6	58	61	4	2	31	1.27
42102509--42102565	30	1.9	30	85	7	80	66	3	5	24	1.28
42102590--42102661	29	2.5	30	81	6	85	58	1	6	33	1.33
42102861--42102965	54	1.9	54	83	11	135	35	0	4	59	1.25
42102904--42102946	19	2.2	20	87	4	61	32	0	6	60	1.23
42102923--42102985	27	2.3	26	86	7	90	39	0	3	57	1.15
42102945--42102985	20	2.0	21	86	9	59	39	0	2	58	1.11
42102939--42102993	27	2.0	27	82	6	67	41	1	1	54	1.21
42103985--42104010	4	6.5	4	100	0	52	73	0	0	26	0.84
42111783--42111810	14	2.0	14	100	0	56	50	21	7	21	1.72
42113245--42113309	26	2.5	26	87	0	85	29	26	24	20	1.99
42115602--42116251	47	13.8	47	91	6	1050	32	8	28	30	1.86
42115892--42115962	37	1.9	37	97	0	133	32	5	29	32	1.81
42115602--42116482	96	9.5	95	87	8	1260	32	8	29	30	1.86
42116217--42116282	32	2.1	32	100	0	132	31	6	30	31	1.82
42116168--42116331	81	2.0	81	100	0	328	32	7	29	31	1.85
42116249--42116477	47	4.8	49	93	2	358	31	8	30	28	1.87
42116119--42116381	130	2.0	130	98	0	508	32	7	29	30	1.85
42116601--42116679	37	2.1	37	90	0	122	24	18	31	25	1.98
42119838--42119887	23	2.1	24	85	3	66	20	26	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42123032--42123208	27	6.6	27	79	4	151	28	29	16	25	1.97
42123032--42123208	54	3.3	54	81	4	196	28	29	16	25	1.97
42123053--42123207	82	1.9	80	84	5	204	28	29	16	25	1.97
42133312--42133406	43	2.2	43	77	5	104	26	17	27	28	1.98
42136949--42136977	15	1.9	15	100	0	58	31	13	0	55	1.39
42143968--42144048	29	2.8	29	80	0	81	38	6	19	35	1.77
42145755--42145806	15	3.5	15	100	0	104	26	5	11	55	1.58
42146862--42147036	58	3.1	57	85	5	210	53	6	5	34	1.50
42147379--42147420	18	2.3	18	95	0	75	42	2	28	26	1.67
42151356--42151403	21	2.3	20	83	13	62	39	4	4	52	1.40
42153584--42153621	19	2.0	19	94	0	67	60	0	7	31	1.25
42159899--42159975	41	1.9	39	82	10	93	36	14	1	48	1.52
42168900--42168943	21	2.1	21	95	0	79	40	38	4	15	1.68
42171791--42171968	27	6.6	27	84	3	205	29	28	15	26	1.96
42171812--42171967	82	1.9	81	88	3	233	29	28	15	26	1.96
42171791--42171980	82	2.3	83	78	12	221	30	27	14	27	1.95
42173772--42173805	17	2.0	17	94	0	59	29	20	23	26	1.99
42177113--42177142	5	6.0	5	100	0	60	80	0	0	20	0.72
42179785--42180182	40	9.9	40	91	0	598	26	27	20	25	1.99
42182529--42182603	22	3.3	22	65	17	62	26	30	10	32	1.90
42182501--42182960	96	4.8	97	92	2	702	29	29	8	33	1.86
42182501--42182960	49	9.6	49	92	3	708	29	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42184412--42184531	56	2.1	56	96	0	222	22	22	9	45	1.80
42188473--42188528	17	3.4	17	68	9	53	14	12	12	60	1.59
42194278--42194496	47	4.7	47	95	0	375	29	29	9	32	1.88
42200438--42200470	17	1.9	17	93	0	57	18	3	24	54	1.57
42201664--42201849	46	4.0	46	94	0	300	36	7	26	29	1.84
42202773--42202818	23	1.9	25	82	8	60	43	4	21	30	1.72
42206133--42206158	12	2.2	12	100	0	52	65	7	0	26	1.20
42208306--42208422	61	2.0	60	86	5	166	51	4	3	41	1.38
42217115--42217196	40	2.0	41	80	2	94	30	8	18	42	1.80
42221154--42221188	16	2.2	16	100	0	70	25	14	37	22	1.92
42226557--42226656	45	2.2	45	89	0	146	23	15	18	44	1.86
42229112--42229149	10	3.8	10	83	10	51	23	7	18	50	1.73
42239592--42239776	40	4.7	40	80	6	207	24	27	22	25	2.00
42239592--42239776	79	2.3	82	80	7	211	24	27	22	25	2.00
42250569--42250646	37	2.1	37	92	0	129	34	5	8	51	1.56
42261230--42261270	21	2.0	21	90	0	64	43	17	14	24	1.86
42261511--42261634	62	2.0	61	90	1	194	29	8	11	50	1.69
42262445--42262484	17	2.4	17	87	8	55	32	2	0	65	1.06
42263831--42264030	79	2.4	81	81	7	233	28	7	17	46	1.75
42264503--42264535	17	2.0	17	88	5	50	30	0	0	69	0.88
42265223--42265247	13	1.9	13	100	0	50	56	0	0	44	0.99
42265243--42265313	20	3.5	20	76	1	61	53	0	5	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42265378--42265409	3	10.7	3	93	0	55	0	65	3	31	1.08
42265587--42265613	10	2.7	10	100	0	54	18	7	0	74	1.05
42265600--42265643	23	2.0	21	82	8	52	31	6	2	59	1.36
42265734--42265860	18	7.0	18	75	19	113	35	4	1	58	1.29
42265671--42265852	20	9.6	20	68	14	82	36	4	2	56	1.31
42265734--42265881	9	16.0	9	66	21	67	33	4	1	60	1.26
42265722--42265881	17	9.1	17	72	16	98	33	5	1	60	1.27
42265847--42265893	19	2.3	21	85	10	62	27	4	0	68	1.08
42267888--42268015	51	2.5	51	89	0	193	39	11	25	22	1.88
42269992--42270213	40	5.6	39	79	7	189	26	21	27	25	1.99
42287392--42287654	40	6.6	40	87	3	307	25	20	26	26	1.99
42287431--42287689	80	3.3	80	84	3	238	26	20	27	25	1.99
42295363--42295586	40	5.6	40	90	1	308	24	20	27	27	1.99
42295324--42295586	80	3.3	80	85	2	316	24	20	27	27	1.99
42295324--42295586	120	2.2	120	83	3	325	24	20	27	27	1.99
42295363--42295621	80	3.3	80	84	3	247	25	20	27	26	1.99
42301755--42301788	12	2.9	11	87	12	50	79	0	2	17	0.86
42306520--42306571	25	2.1	25	100	0	104	32	34	13	19	1.90
42307150--42307192	19	2.3	18	84	11	59	55	6	4	32	1.47
42307176--42307213	15	2.7	14	84	11	51	44	10	0	44	1.38
42307176--42307213	14	2.7	15	88	8	53	44	10	0	44	1.38
42307384--42307439	21	2.7	21	88	0	85	26	8	35	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42313888--42313932	18	2.4	20	82	14	60	37	4	0	57	1.19
42313888--42313931	19	2.4	17	85	11	52	38	4	0	56	1.20
42315755--42316505	251	3.0	252	97	0	1396	38	15	21	23	1.92
42317498--42317574	13	5.9	13	89	0	118	24	9	25	40	1.85
42322573--42322612	16	2.6	15	76	7	53	65	5	5	25	1.34
42322806--42322843	19	2.0	20	94	5	69	36	10	34	18	1.85
42328247--42328526	131	2.1	130	77	6	289	39	10	12	38	1.77
42330019--42330071	24	2.2	24	86	0	70	39	3	7	49	1.49
42330036--42330081	24	1.9	24	86	8	67	41	6	4	47	1.49
42332736--42332920	79	2.3	80	83	9	227	27	27	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228