genome.fa.s23.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  147  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44232518--44232683	3	56.0	3	67	11	56	60	5	5	28	1.41
44232543--44232611	24	2.7	26	72	19	72	59	4	7	28	1.44
44234091--44234349	50	5.2	50	77	0	257	23	19	24	33	1.97
44234085--44234349	100	2.7	100	86	0	368	23	19	24	33	1.97
44235609--44235643	14	2.5	14	90	0	52	11	14	2	71	1.25
44241405--44241434	14	2.1	15	93	6	53	90	10	0	0	0.47
44242536--44242573	18	2.1	18	100	0	76	21	0	18	60	1.36
44251574--44251615	17	2.4	17	88	4	57	64	2	2	30	1.19
44253503--44253545	10	4.1	10	82	11	50	34	0	6	58	1.25
44261028--44261078	23	2.2	24	96	3	95	27	5	25	41	1.78
44264852--44264984	47	2.8	47	83	1	176	46	18	12	22	1.82
44264952--44265189	22	10.5	22	68	10	120	41	18	14	25	1.88
44265028--44265074	11	4.3	11	78	10	51	44	21	6	27	1.76
44264908--44265189	69	4.1	69	90	0	422	42	19	13	24	1.87
44265831--44265910	42	1.9	42	89	0	124	31	30	17	21	1.96
44274132--44274156	5	5.0	5	100	0	50	80	0	0	20	0.72
44288454--44288512	29	2.0	29	81	12	68	28	28	1	40	1.66
44292862--44292940	37	2.1	37	88	4	115	25	30	18	25	1.98
44293110--44293209	46	2.1	48	94	3	177	29	30	9	32	1.88
44293171--44293240	32	2.2	32	94	2	124	25	30	11	32	1.91
44293125--44293287	79	2.1	78	94	2	283	27	29	10	32	1.90
44293203--44293516	47	6.7	47	97	0	565	29	28	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44297109--44297291	40	4.6	40	79	6	185	24	27	22	26	2.00
44297596--44297674	29	2.7	29	86	5	106	27	32	15	24	1.95
44297656--44297803	43	3.4	43	93	3	260	27	35	14	22	1.94
44299657--44299735	37	2.1	37	88	4	115	25	30	18	25	1.98
44299854--44300279	47	9.1	47	93	0	647	28	29	9	32	1.88
44303153--44303204	25	2.1	25	85	0	68	13	21	19	46	1.84
44313969--44314038	34	2.1	34	82	15	85	48	0	2	48	1.16
44314008--44314062	24	2.3	25	78	12	62	54	0	1	43	1.10
44320339--44320396	30	1.9	31	85	3	82	37	8	5	48	1.56
44321129--44321192	29	2.2	29	83	8	76	34	10	9	45	1.72
44321315--44321437	31	4.1	31	77	9	94	39	12	10	38	1.77
44321322--44321395	31	2.4	31	88	2	105	39	13	10	36	1.80
44327090--44327121	15	2.1	15	94	0	55	21	3	6	68	1.26
44328829--44328876	12	4.1	12	75	24	57	50	2	0	47	1.12
44331005--44331077	26	2.8	27	85	6	96	39	6	20	32	1.79
44340861--44340922	29	2.2	28	82	2	70	24	12	17	45	1.84
44349024--44349059	3	12.0	3	100	0	72	33	0	0	66	0.92
44350146--44350306	74	2.2	74	98	0	313	45	11	13	29	1.78
44359487--44359519	17	1.9	17	100	0	66	12	15	18	54	1.71
44360238--44360336	43	2.3	43	82	3	137	26	15	18	40	1.89
44360888--44361031	47	3.1	47	68	18	131	45	3	2	48	1.34
44360858--44361072	91	2.4	90	90	4	342	46	4	3	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44361065--44361278	59	3.7	58	72	12	197	43	2	2	50	1.29
44361179--44361208	15	1.9	16	93	6	53	43	0	6	50	1.28
44361079--44361368	120	2.4	120	97	0	544	44	2	3	49	1.32
44361040--44361368	120	2.7	127	86	10	454	45	2	3	48	1.33
44361152--44361339	61	3.1	61	70	11	197	44	2	4	48	1.35
44361200--44361234	18	2.0	17	88	5	52	45	0	0	54	0.99
44361254--44361300	24	2.0	24	84	15	64	40	4	4	51	1.41
44361153--44361336	57	3.1	58	67	25	157	44	2	4	48	1.36
44361510--44361607	45	2.2	45	85	5	128	34	29	5	30	1.79
44367706--44367782	14	5.0	15	71	20	52	41	15	9	33	1.79
44367722--44367761	20	2.0	20	90	0	62	50	12	10	27	1.72
44368187--44368231	16	2.9	16	83	9	58	51	0	6	42	1.28
44373818--44373856	20	2.0	20	85	10	53	23	5	10	61	1.48
44375220--44375256	9	4.1	9	85	0	56	48	13	8	29	1.71
44375476--44375535	30	2.0	31	86	3	86	21	40	0	38	1.54
44379972--44380000	12	2.3	13	94	5	51	75	0	0	24	0.80
44383563--44383730	40	4.2	40	82	8	148	27	27	20	24	1.99
44383600--44383730	40	3.3	39	87	4	190	28	27	20	23	1.99
44383598--44383783	80	2.3	79	83	9	218	27	26	20	24	1.99
44400999--44401043	21	2.1	22	84	12	58	66	8	11	13	1.44
44403502--44403713	40	5.3	41	82	5	265	25	20	27	27	1.99
44403502--44403694	80	2.4	80	94	0	341	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44407136--44407397	35	7.8	34	83	6	293	41	17	22	18	1.90
44407136--44407397	67	3.9	65	84	8	310	41	17	22	18	1.90
44407159--44407397	102	2.3	102	91	0	388	41	17	22	18	1.90
44407691--44407724	13	2.5	13	95	4	59	44	8	5	41	1.60
44407801--44407974	32	5.2	33	82	8	208	17	22	17	42	1.89
44407801--44407971	67	2.6	67	94	0	288	17	22	17	42	1.89
44410762--44410806	20	2.1	22	84	12	58	13	11	8	66	1.44
44415122--44415155	13	2.5	13	95	4	59	41	5	8	44	1.60
44415454--44415722	35	8.0	34	81	6	298	18	21	18	40	1.91
44415449--44415712	102	2.6	102	90	1	408	18	22	18	40	1.91
44415449--44415722	67	4.0	68	88	4	324	18	21	17	41	1.90
44420986--44421019	13	2.5	13	95	4	59	41	5	8	44	1.60
44421318--44421519	35	6.0	34	84	6	241	18	21	17	41	1.90
44421313--44421509	67	2.9	68	85	6	267	18	22	17	41	1.90
44421313--44421519	102	2.0	102	92	0	342	18	21	17	42	1.89
44423091--44423253	29	5.6	29	75	7	107	38	11	25	24	1.89
44423203--44423275	30	2.5	30	86	6	96	35	6	30	27	1.83
44423266--44423379	29	3.9	29	82	2	129	38	14	25	21	1.92
44423233--44423362	59	2.2	60	82	6	167	38	10	26	23	1.88
44423091--44423309	117	1.9	116	89	0	339	37	11	26	24	1.89
44423089--44423336	117	2.1	117	85	2	336	37	11	26	24	1.89
44423151--44423379	88	2.6	86	75	8	219	37	13	27	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44423259--44423377	59	2.0	58	86	1	166	38	13	25	22	1.91
44426972--44427036	32	2.0	32	93	0	112	61	4	0	33	1.16
44427377--44427447	22	3.3	22	70	7	74	43	12	19	23	1.86
44427376--44427475	42	2.4	42	93	0	164	45	15	18	22	1.85
44427399--44427467	20	3.3	20	68	7	57	46	17	15	20	1.84
44427388--44427455	22	3.2	22	67	23	63	45	14	19	20	1.85
44436124--44436247	25	5.0	25	67	14	87	32	20	22	25	1.98
44436124--44436247	50	2.5	50	81	3	144	32	20	22	25	1.98
44442180--44442253	20	3.8	19	75	10	69	14	28	21	35	1.93
44442219--44442264	20	2.3	21	77	11	60	23	23	17	34	1.96
44443168--44443201	18	1.9	18	88	5	52	32	17	0	50	1.47
44447359--44447404	21	2.2	21	84	0	56	21	34	23	19	1.96
44449978--44450029	25	2.1	25	100	0	104	15	3	3	76	1.07
44456601--44456643	22	2.0	21	82	13	52	60	2	4	32	1.30
44457522--44457691	45	3.8	46	73	9	127	41	15	22	20	1.90
44457780--44457881	44	2.3	44	89	0	150	19	15	22	42	1.89
44459047--44459092	19	2.2	23	85	14	64	15	34	21	28	1.94
44461158--44461200	11	3.9	11	84	0	59	41	4	6	46	1.51
44468433--44468809	60	6.3	60	78	3	373	19	22	26	31	1.98
44468433--44468809	180	2.1	180	80	5	433	19	22	26	31	1.98
44486945--44487129	63	3.0	62	85	0	244	24	24	30	21	1.99
44492672--44492908	63	3.8	63	79	2	255	25	24	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44492677--44492922	126	2.0	126	81	4	291	25	23	27	22	2.00
44500025--44500049	3	8.3	3	100	0	50	68	0	32	0	0.90
44506223--44506292	31	2.2	32	82	10	81	18	5	18	57	1.60
44507268--44507324	15	3.8	15	73	13	55	61	0	3	35	1.13
44507268--44507321	23	2.3	24	79	20	62	62	0	3	33	1.12
44508457--44508580	43	2.9	43	84	1	169	29	16	15	38	1.89
44508729--44508857	25	5.2	25	87	0	150	32	6	24	36	1.81
44508729--44508887	75	2.2	72	83	3	201	34	7	23	34	1.83
44509055--44509086	16	2.0	16	93	0	55	25	34	18	21	1.96
44509313--44509466	45	3.4	45	78	0	148	33	11	21	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228