genome.fa.s23.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  31  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680826--9680889	17	3.6	17	76	15	67	46	10	12	29	1.76
9680842--9680898	19	3.1	19	76	19	75	45	14	12	28	1.80
9680826--9680898	36	2.0	36	94	0	128	45	12	12	30	1.78
9682647--9682719	24	3.0	24	73	0	74	34	21	20	23	1.97
9683880--9683963	32	2.6	32	86	0	105	47	11	7	33	1.68
9698993--9699061	33	2.1	33	97	0	129	27	2	21	47	1.65
9710819--9710879	9	6.8	9	75	7	61	45	32	21	0	1.52
9710812--9710879	15	4.5	15	75	3	57	47	32	20	0	1.51
9716569--9716598	15	2.0	15	93	0	51	50	0	10	40	1.36
9720526--9720594	4	17.5	4	73	26	51	24	2	0	72	0.98
9720523--9720593	13	5.5	13	76	18	60	25	2	0	71	0.99
9720523--9720598	20	3.5	21	77	20	77	25	3	0	71	1.03
9720525--9720601	26	3.0	25	81	14	93	24	3	0	71	1.03
9720756--9720808	22	2.4	21	78	6	52	30	49	3	16	1.64
9721928--9721997	27	2.5	27	84	13	81	80	1	0	18	0.80
9721923--9721990	15	4.6	15	78	14	79	80	1	0	17	0.78
9721926--9721989	7	8.9	7	80	16	69	81	1	0	17	0.77
9724016--9724066	3	17.0	3	100	0	102	66	0	33	0	0.92
9727789--9727831	21	2.0	21	100	0	86	30	0	18	51	1.47
9730942--9730979	3	12.7	3	100	0	76	68	0	0	31	0.90
9734947--9734985	12	2.9	14	81	18	55	66	0	0	33	0.92
9736274--9736325	26	2.0	26	100	0	104	26	11	11	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9741310--9741370	31	2.0	31	100	0	122	49	3	8	39	1.49
9751293--9752175	440	2.0	438	98	1	1705	43	13	15	26	1.84
9754143--9754169	2	13.5	2	100	0	54	51	0	48	0	1.00
9757487--9757528	17	2.5	17	96	0	75	9	26	45	19	1.80
9759377--9759574	37	5.4	37	80	4	206	43	16	16	24	1.87
9759384--9759571	74	2.6	75	84	6	235	43	15	15	24	1.86
9768506--9768531	13	2.0	13	100	0	52	23	0	0	76	0.78
9784388--9784426	20	2.0	20	84	0	51	46	10	7	35	1.67
9786860--9786893	17	2.0	17	94	0	59	38	2	17	41	1.65
9786871--9786914	23	2.0	22	86	4	61	31	2	22	43	1.66
9788233--9788371	46	3.0	46	76	4	145	28	16	26	28	1.97
9790921--9791420	246	2.0	246	99	0	991	37	14	10	38	1.80
9791445--9791484	20	2.0	20	85	0	53	25	17	25	32	1.97
9797504--9797587	19	4.5	19	69	26	72	22	3	40	33	1.71
9797475--9797589	55	2.1	55	100	0	230	22	3	41	32	1.71
9798195--9798262	14	4.5	15	71	12	59	27	1	35	35	1.66
9798175--9798262	22	4.0	22	73	8	72	27	1	38	32	1.64
9798181--9798247	29	2.3	29	85	10	91	25	0	38	35	1.56
9798178--9798230	14	3.7	14	80	9	63	22	0	47	30	1.52
9798175--9798235	7	8.4	7	73	12	52	27	0	40	31	1.57
9798610--9799096	246	2.0	245	85	2	663	34	16	17	32	1.92
9799000--9799467	233	2.0	233	86	2	645	36	14	19	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9800203--9800326	60	2.1	60	95	1	223	24	8	25	41	1.82
9800367--9800407	13	3.2	13	83	13	57	34	4	9	51	1.56
9800705--9800757	23	2.3	23	78	15	65	9	24	9	56	1.60
9801059--9801094	15	2.2	18	85	14	51	8	11	5	75	1.19
9801945--9802043	13	7.5	13	75	6	83	41	11	3	44	1.55
9801975--9802052	40	2.0	40	92	0	129	43	11	2	42	1.54
9802062--9802410	9	40.4	9	68	16	186	42	20	2	34	1.64
9802063--9802127	25	2.7	24	76	11	69	46	21	1	30	1.61
9802112--9802168	25	2.3	25	87	0	78	45	21	1	31	1.62
9802137--9802244	16	7.1	16	68	16	77	43	16	0	39	1.48
9802262--9802421	25	6.3	26	75	11	143	43	21	2	33	1.66
9802252--9802406	34	4.5	34	71	13	113	42	21	2	32	1.67
9808667--9808736	9	7.8	9	96	0	113	22	10	28	38	1.87
9808935--9809375	114	3.9	113	88	2	614	35	18	20	25	1.95
9809862--9809951	7	13.0	7	75	4	76	15	0	40	44	1.47
9809887--9809951	14	4.6	14	84	1	85	13	0	43	43	1.44
9810049--9810090	16	2.6	16	100	0	84	11	4	35	47	1.61
9810355--9810457	44	2.3	45	85	8	140	28	17	29	25	1.97
9810482--9810664	84	2.2	85	85	3	235	27	21	21	29	1.99
9810511--9810668	42	3.8	42	88	1	219	29	20	20	30	1.97
9814012--9814039	3	9.3	3	100	0	56	67	0	0	32	0.91
9821269--9821326	29	2.0	29	82	0	71	24	15	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9822382--9822436	24	2.2	25	81	15	62	65	0	3	30	1.10
9822380--9822457	15	5.3	14	70	14	50	61	0	6	32	1.21
9823865--9823982	23	5.1	23	82	9	134	12	2	40	44	1.56
9823867--9823985	48	2.6	47	82	7	136	13	2	39	44	1.57
9832222--9832314	25	3.8	25	77	5	100	23	25	16	34	1.95
9836541--9836571	12	2.6	12	89	0	53	19	22	29	29	1.98
9837524--9837621	40	2.5	39	78	4	110	28	24	19	27	1.98
9838473--9838548	4	19.0	4	74	17	61	2	25	2	69	1.14
9838467--9838521	22	2.4	23	82	11	69	0	27	0	72	0.85
9838475--9838539	22	3.1	20	79	18	62	1	24	3	70	1.10
9840560--9840613	23	2.5	21	75	13	56	31	7	1	59	1.36
9858077--9858241	88	1.9	87	83	6	210	25	22	25	26	2.00
9858227--9858998	44	18.1	42	70	13	361	29	19	22	28	1.98
9858244--9858923	170	3.9	170	91	2	1004	29	19	22	28	1.98
9858764--9859071	124	2.4	126	85	3	388	28	19	22	29	1.98
9861061--9861098	15	2.5	15	100	0	76	21	7	5	65	1.38
9862857--9862881	5	5.0	5	100	0	50	20	0	0	80	0.72
9865425--9865539	39	2.9	39	92	0	185	34	32	17	15	1.91
9868273--9868305	15	2.2	15	94	0	57	6	3	21	69	1.24
9869368--9869396	11	2.5	12	94	5	51	86	0	10	3	0.69
9870701--9870754	23	2.4	22	87	3	72	38	11	22	27	1.88
9877275--9877307	16	2.1	15	94	5	57	24	12	27	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9884933--9884972	20	2.0	20	90	0	62	37	2	2	57	1.26
9887314--9887360	23	2.0	23	84	8	60	63	4	6	25	1.36
9902818--9902892	21	3.4	22	78	10	73	64	2	1	32	1.16
9904225--9904263	18	2.1	19	86	13	55	35	0	5	58	1.20
9910929--9910996	31	2.2	31	84	2	84	45	0	7	47	1.31
9911272--9911357	30	2.9	29	75	17	86	51	1	1	46	1.16
9911270--9911342	38	1.9	37	81	10	85	53	1	0	45	1.09
9923804--9923864	23	2.5	26	84	15	85	31	22	24	21	1.98
9925281--9925437	41	3.8	41	81	0	170	19	18	26	35	1.95
9926259--9926533	23	11.9	23	70	7	153	25	9	20	44	1.82
9926249--9926509	22	11.3	22	69	9	112	24	10	20	44	1.83
9926243--9926519	69	4.0	69	92	0	428	24	10	20	44	1.82
9926319--9926510	47	4.2	45	68	15	115	24	10	20	43	1.84
9928333--9928450	37	3.5	36	82	13	144	33	27	10	27	1.89
9928635--9928803	41	4.1	41	90	0	275	23	27	20	29	1.98
9928635--9928803	82	2.1	82	95	0	311	23	27	20	29	1.98
9929024--9929067	17	2.7	17	89	6	65	43	18	2	36	1.63
9930202--9930226	13	1.9	13	100	0	50	68	24	0	8	1.16
9930503--9930617	43	2.7	44	86	2	135	33	24	17	24	1.96
9935834--9935900	28	2.4	28	89	0	98	29	11	28	29	1.92
9950300--9950324	11	2.3	11	100	0	50	16	0	0	84	0.63
9951245--9951315	26	2.7	26	84	0	97	23	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9951519--9951592	13	5.7	13	83	0	85	45	1	20	32	1.59
9951522--9951592	26	2.7	26	91	0	106	45	1	21	32	1.61
9952859--9952946	35	2.5	35	90	0	149	12	14	35	37	1.84
9954692--9954852	18	9.3	17	70	11	69	42	8	13	36	1.73
9954727--9954946	18	12.3	18	73	13	170	44	9	14	32	1.76
9954726--9954947	17	12.4	17	70	17	87	43	9	13	33	1.76
9954812--9954935	56	2.2	56	84	13	159	43	8	15	33	1.76
9955032--9955081	17	2.9	17	74	14	57	46	8	14	32	1.73
9955655--9955723	26	2.5	26	81	11	68	4	27	42	26	1.74
9955737--9955819	33	2.7	28	77	20	78	4	20	46	27	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228