genome.fa.s23.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  34  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10350766--10351106	142	2.4	140	91	1	520	31	9	30	28	1.88
10351225--10351303	38	2.1	37	83	6	97	26	17	29	26	1.98
10369007--10369055	21	2.3	21	79	6	55	71	8	0	20	1.11
10371151--10371181	3	10.7	3	93	6	55	0	35	0	64	0.94
10371401--10371445	9	4.6	10	81	13	58	17	0	11	71	1.14
10371404--10371441	19	2.0	20	89	5	60	18	0	7	73	1.06
10371926--10371992	10	7.0	9	77	15	64	71	1	1	25	1.03
10371925--10371987	29	2.2	27	86	8	81	71	1	1	25	1.04
10371928--10371987	9	6.4	10	78	16	58	73	1	1	23	1.01
10372183--10372220	18	2.1	18	85	9	51	65	2	0	31	1.06
10380680--10380723	19	2.3	19	88	0	61	29	11	2	56	1.46
10385918--10385977	26	2.3	27	88	8	88	30	1	0	68	0.99
10385928--10385994	26	2.6	27	83	4	75	26	1	1	70	1.05
10387109--10387150	20	2.1	20	90	0	66	40	11	16	30	1.85
10387159--10387189	15	2.1	15	100	0	62	22	12	25	38	1.90
10391834--10391875	20	2.1	20	90	0	66	40	11	16	30	1.85
10391884--10391914	15	2.1	15	100	0	62	22	12	25	38	1.90
10393720--10393757	19	2.0	19	89	0	58	50	13	5	31	1.63
10401149--10401489	169	2.0	169	90	0	529	39	17	10	32	1.84
10402913--10402937	13	1.9	13	100	0	50	0	52	0	48	1.00
10409908--10409938	7	4.4	7	100	0	62	16	0	38	45	1.47
10411997--10412036	11	3.5	11	86	6	62	15	0	7	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10411987--10412029	12	3.6	12	84	9	61	9	2	9	79	1.03
10411987--10412041	23	2.3	24	93	3	94	12	1	7	78	1.04
10412098--10412136	14	2.7	15	84	4	53	30	0	0	69	0.89
10412651--10412754	53	2.0	52	81	5	120	34	6	14	44	1.72
10413255--10413402	68	2.2	68	96	1	271	41	2	20	35	1.64
10414629--10414709	36	2.3	34	83	12	101	49	0	2	48	1.14
10415449--10415503	24	2.2	26	78	12	62	36	0	18	45	1.49
10418624--10418783	25	6.6	25	82	9	167	38	18	23	20	1.93
10419725--10419753	5	5.8	5	100	0	58	58	0	0	41	0.98
10422434--10422463	3	10.0	3	100	0	60	33	33	0	33	1.58
10428373--10428399	3	9.0	3	100	0	54	66	0	0	33	0.92
10429117--10429153	9	4.0	9	89	3	56	62	0	0	37	0.96
10429245--10429374	15	8.5	15	65	20	54	49	4	2	43	1.36
10429731--10429803	33	2.2	34	80	9	89	50	17	6	24	1.70
10429820--10429859	14	2.9	14	92	0	62	30	20	5	45	1.72
10431715--10431795	37	2.2	37	79	12	89	45	3	18	32	1.67
10433070--10433226	78	2.0	78	100	0	314	39	15	5	40	1.69
10434491--10434608	41	2.9	41	92	0	200	31	22	21	25	1.98
10437646--10437777	40	3.4	39	74	11	110	25	19	24	31	1.98
10442024--10442078	25	2.2	25	87	3	76	27	29	10	32	1.91
10442045--10442121	25	3.1	25	77	5	68	23	24	22	29	1.99
10447531--10447564	6	5.7	6	89	0	50	50	44	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10448344--10448370	8	3.4	8	100	0	54	62	0	0	37	0.95
10449366--10449403	19	2.0	19	100	0	76	21	10	15	52	1.72
10453365--10453417	24	2.2	24	86	6	72	37	1	7	52	1.41
10456014--10456097	38	2.2	37	87	8	116	54	2	7	35	1.41
10458104--10458155	18	2.9	18	94	0	86	26	15	15	42	1.87
10458699--10458739	20	2.0	20	95	0	73	17	0	21	60	1.35
10461876--10461942	30	2.2	32	84	10	86	46	0	2	50	1.16
10462021--10462045	7	3.6	7	100	0	50	76	0	0	24	0.80
10463902--10463960	31	1.9	31	93	6	102	27	13	27	32	1.94
10468508--10468629	62	2.0	64	80	8	144	46	9	14	29	1.75
10476662--10476698	7	5.4	7	90	6	58	27	43	10	18	1.83
10489967--10489996	15	1.9	16	93	6	53	36	0	10	53	1.35
10491697--10491750	25	2.2	25	93	0	90	46	22	9	22	1.80
10491896--10491941	23	2.0	23	100	0	92	30	39	8	21	1.84
10492205--10492246	17	2.5	17	92	0	66	23	16	28	30	1.96
10492274--10492306	17	1.9	17	93	0	57	21	18	30	30	1.97
10492346--10492397	23	2.3	23	82	0	68	36	13	17	32	1.89
10493395--10493425	16	2.0	15	93	6	53	29	19	0	51	1.47
10497644--10497677	18	1.9	17	88	5	50	35	26	0	38	1.57
10501224--10501309	6	12.3	7	78	21	92	69	0	15	15	1.19
10501224--10501300	22	3.7	21	83	8	95	71	0	14	14	1.15
10501236--10501300	13	4.8	13	92	7	96	72	0	13	13	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10501236--10501309	27	2.7	26	82	15	96	70	0	14	14	1.18
10501242--10501300	14	4.2	14	93	6	102	72	0	13	13	1.11
10501242--10501309	14	4.9	14	89	5	84	70	0	14	14	1.17
10501224--10501309	21	4.1	21	85	14	92	69	0	15	15	1.19
10502548--10503197	87	7.5	87	88	0	951	28	24	23	24	1.99
10519069--10519230	20	8.1	20	63	13	55	17	31	17	33	1.93
10519036--10519202	40	4.2	40	81	3	201	17	28	16	37	1.92
10535392--10535439	23	2.1	23	84	7	62	45	2	0	52	1.12
10535632--10535703	37	2.0	36	86	2	99	58	5	13	22	1.56
10537995--10538019	8	3.1	8	100	0	50	64	24	12	0	1.27
10540794--10540866	35	2.1	35	84	0	92	28	13	24	32	1.94
10546539--10546781	50	4.8	50	91	0	378	20	30	23	25	1.99
10551844--10551876	17	1.9	18	88	11	52	39	12	0	48	1.40
10556409--10556441	17	1.9	17	93	0	57	27	24	6	42	1.78
10561024--10561061	11	3.5	11	96	0	67	13	10	15	60	1.59
10566448--10566480	16	2.1	16	94	0	57	15	0	12	72	1.12
10569453--10569731	86	3.2	85	83	4	344	33	16	19	30	1.94
10569470--10569725	85	3.0	85	83	4	327	33	17	18	30	1.94
10571837--10571963	44	2.9	43	75	16	127	23	18	26	30	1.98
10571834--10571963	43	3.0	43	76	14	142	23	19	26	30	1.98
10575834--10575871	10	3.5	11	86	13	53	63	2	0	34	1.09
10581225--10581250	10	2.6	10	100	0	52	23	0	30	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10584194--10584309	33	3.4	34	68	20	107	27	28	6	37	1.80
10584186--10584329	69	2.1	69	96	0	261	28	26	7	37	1.84
10584542--10584566	13	1.9	13	100	0	50	64	20	8	8	1.46
10586877--10586941	30	2.1	31	88	8	98	36	15	4	43	1.67
10588101--10588139	20	2.0	20	94	0	69	20	5	10	64	1.44
10588174--10588204	5	6.2	5	92	0	53	3	0	54	41	1.16
10589520--10589556	17	2.2	17	95	0	65	24	16	16	43	1.87
10594482--10594521	20	2.0	21	85	14	57	52	7	20	20	1.70
10595607--10595649	22	2.0	22	86	4	61	34	0	11	53	1.37
10598838--10598924	37	2.4	37	94	3	151	32	5	13	48	1.66
10600203--10600298	49	2.0	49	87	0	138	32	19	20	27	1.97
10600380--10600471	33	2.8	33	88	1	139	44	11	10	32	1.76
10604324--10604501	33	5.3	32	74	12	124	42	14	13	29	1.83
10604324--10604501	67	2.6	68	79	3	216	42	14	13	29	1.83
10611151--10611184	2	17.0	2	100	0	68	50	50	0	0	1.00
10611182--10611218	4	9.2	4	100	0	74	51	24	0	24	1.49
10616295--10616491	98	2.0	98	95	0	358	37	25	10	27	1.88
10617786--10617879	19	4.8	19	81	5	125	34	15	10	39	1.83
10617779--10617878	40	2.6	39	84	6	125	35	15	10	40	1.80
10618093--10618861	44	17.7	43	71	14	415	27	22	20	29	1.98
10618087--10618962	217	4.0	217	93	1	1418	27	22	19	29	1.98
10618955--10619961	132	7.7	132	93	1	1686	24	24	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10621160--10621204	6	7.2	6	82	9	54	2	22	0	75	0.91
10621161--10621216	20	2.9	19	84	5	69	1	21	0	76	0.87
10621168--10621216	12	3.9	12	84	12	55	0	22	0	77	0.77
10625282--10625478	98	2.0	98	95	0	358	37	25	10	27	1.88
10626781--10626893	19	5.8	19	82	4	145	34	15	11	38	1.84
10626781--10626892	40	2.8	40	89	2	165	34	15	11	38	1.83
10633937--10633965	5	6.0	5	96	4	51	82	0	0	17	0.66
10639032--10639073	20	2.2	20	86	4	59	28	0	2	69	1.01
10658858--10658898	20	2.0	20	86	9	57	68	0	7	24	1.15
10659216--10659254	15	2.4	17	87	8	55	69	5	7	17	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228