genome.fa.s23.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  181  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54077977--54078009	6	5.5	6	100	0	66	18	0	48	33	1.48
54077855--54078132	144	2.0	143	84	5	375	31	13	30	24	1.94
54093379--54093405	3	9.0	3	100	0	54	33	0	0	66	0.92
54094163--54094465	126	2.4	126	80	3	318	35	14	27	22	1.93
54094451--54094483	6	5.5	6	100	0	66	18	0	48	33	1.48
54094329--54094606	144	2.0	143	84	5	375	31	13	30	24	1.94
54102720--54102799	28	2.9	28	80	0	97	33	10	13	42	1.78
54104834--54104875	19	2.2	19	100	0	84	9	4	45	40	1.58
54104988--54105051	21	3.0	21	79	0	74	15	25	17	42	1.88
54106471--54106564	33	2.8	34	77	9	84	32	14	24	27	1.95
54106946--54107047	40	2.7	37	78	11	107	27	19	25	27	1.99
54112064--54112097	17	2.0	17	94	0	59	32	5	11	50	1.63
54112452--54112490	19	2.1	18	90	4	60	25	41	10	23	1.86
54112456--54112505	19	2.6	19	81	9	57	32	30	14	24	1.94
54114718--54114752	18	1.9	18	88	0	52	54	2	8	34	1.46
54121070--54121140	32	2.3	31	80	14	83	33	22	7	36	1.81
54137331--54137410	28	2.9	28	80	0	97	33	10	13	42	1.78
54139444--54139485	19	2.2	19	100	0	84	9	4	45	40	1.58
54139599--54139662	21	3.0	21	79	0	74	15	25	17	42	1.88
54141084--54141177	33	2.8	34	77	9	84	32	14	24	27	1.95
54141559--54141660	40	2.7	37	78	11	107	27	19	25	27	1.99
54146702--54146734	17	1.9	17	93	0	57	33	6	12	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54149313--54149419	53	2.0	53	87	7	155	59	2	4	32	1.32
54149391--54149428	19	2.0	19	89	0	58	55	5	7	31	1.51
54149349--54149417	24	2.6	25	80	11	77	59	4	4	31	1.37
54156069--54156161	31	3.0	31	74	4	98	32	20	7	39	1.80
54173497--54173551	27	2.0	27	92	0	92	67	1	0	30	1.01
54177391--54177506	40	2.9	40	88	0	151	33	21	21	23	1.97
54177621--54177663	22	1.9	22	85	4	59	46	25	18	9	1.79
54180051--54180100	25	2.0	25	96	0	91	50	12	10	28	1.71
54180768--54180809	7	6.1	7	88	5	68	71	0	2	26	0.98
54180750--54180805	13	4.3	13	86	4	60	76	5	1	16	1.05
54180762--54180807	13	3.5	13	87	3	65	73	2	2	21	1.04
54182442--54182504	21	2.9	21	72	18	58	47	7	7	36	1.62
54183799--54183867	26	2.7	27	86	10	85	17	5	37	39	1.74
54183808--54183867	26	2.3	26	91	5	95	16	5	36	41	1.70
54185631--54185686	22	2.5	23	82	2	69	51	1	1	44	1.22
54185662--54185701	16	2.5	16	91	0	62	47	2	7	42	1.45
54185774--54185801	9	3.1	9	100	0	56	32	0	10	57	1.33
54185690--54185899	68	3.1	68	96	1	379	40	5	9	45	1.58
54185842--54185869	9	3.1	9	100	0	56	32	0	10	57	1.33
54187668--54187861	37	5.0	37	85	9	253	35	13	21	28	1.92
54187630--54187861	74	2.9	78	82	11	274	34	13	22	29	1.92
54187777--54187900	46	2.8	46	90	3	191	33	16	21	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54189979--54190035	29	2.0	29	82	6	71	45	3	1	49	1.29
54206631--54206705	35	2.1	35	80	4	80	34	14	12	38	1.83
54208086--54208142	24	2.3	24	84	6	78	24	8	15	50	1.72
54209101--54209232	67	2.0	66	93	1	228	31	10	22	35	1.88
54209228--54209273	24	1.9	24	100	0	92	39	15	17	28	1.90
54209522--54209555	17	2.0	17	100	0	68	41	0	0	58	0.98
54209627--54209692	26	2.4	28	78	19	75	43	0	1	54	1.09
54209539--54209758	102	2.2	102	96	0	406	42	0	4	51	1.28
54209620--54209916	119	2.5	120	93	2	406	43	0	4	50	1.27
54210060--54210147	45	2.0	44	84	6	115	36	25	5	32	1.79
54216065--54216133	36	1.9	36	84	0	93	18	8	31	40	1.81
54220507--54220562	20	2.8	20	81	8	69	67	5	1	25	1.21
54222784--54222844	21	2.9	20	75	18	61	59	3	6	31	1.39
54223111--54223167	3	19.3	3	92	3	98	66	0	1	31	1.02
54226838--54226884	12	4.0	12	80	2	51	29	2	6	61	1.32
54226843--54226903	3	20.0	3	79	3	68	32	4	3	59	1.35
54227513--54227735	108	2.0	110	87	3	326	30	15	19	34	1.93
54227561--54227892	180	1.9	176	87	5	488	29	16	18	36	1.92
54239349--54239824	44	10.8	44	76	9	319	28	19	24	28	1.98
54239569--54239778	90	2.3	90	95	0	377	28	20	24	27	1.99
54239619--54240078	90	5.3	87	76	9	339	28	20	24	26	1.99
54239352--54239991	309	2.1	309	95	0	1156	28	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54239745--54240084	174	1.9	176	86	3	490	28	20	23	27	1.99
54240516--54240560	20	2.2	20	96	0	81	35	42	4	17	1.70
54241677--54241708	3	10.7	3	93	0	55	34	3	0	62	1.11
54241680--54241714	15	2.2	16	95	5	63	31	8	0	60	1.27
54242138--54242191	22	2.4	23	75	3	56	31	9	7	51	1.61
54255660--54255702	11	4.0	11	84	6	52	69	4	0	25	1.07
54255665--54255712	21	2.3	22	82	17	66	66	6	0	27	1.15
54257930--54257990	21	2.9	20	75	18	61	59	3	6	31	1.39
54258258--54258317	3	20.3	3	93	3	104	66	0	1	31	1.01
54261594--54261621	13	2.2	13	100	0	56	85	7	0	7	0.73
54261995--54262041	12	4.0	12	80	2	51	29	2	6	61	1.32
54262000--54262058	3	19.0	3	79	6	64	32	5	3	59	1.36
54262669--54262891	108	2.0	110	87	3	326	30	15	19	34	1.93
54262717--54263049	181	1.9	176	87	4	497	29	16	18	36	1.92
54274799--54275183	46	8.7	45	69	14	187	30	20	21	27	1.98
54274844--54275114	87	3.1	87	71	10	282	30	21	20	27	1.98
54274753--54275183	174	2.4	174	92	1	700	30	20	21	28	1.98
54276685--54276742	3	19.0	3	78	3	62	32	5	3	58	1.37
54276676--54276722	21	2.2	22	85	11	71	27	2	6	63	1.30
54277355--54277774	114	3.8	110	87	3	576	30	15	20	33	1.94
54278315--54278343	2	14.5	2	100	0	58	51	0	0	48	1.00
54284147--54284208	29	2.2	29	79	2	72	64	4	8	22	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54284338--54284398	29	2.1	28	84	3	77	26	13	18	42	1.86
54284609--54284678	22	3.2	21	84	9	79	32	25	1	40	1.65
54284618--54284679	22	2.8	22	85	9	81	33	24	1	40	1.65
54284650--54284708	30	2.0	30	89	0	91	32	33	1	32	1.68
54284765--54284828	29	2.2	29	83	5	85	40	0	1	57	1.08
54287084--54288008	28	34.4	28	85	8	1163	47	20	0	31	1.52
54291223--54291501	123	2.3	124	86	3	393	31	23	15	29	1.95
54301296--54301324	9	3.2	9	100	0	58	51	0	24	24	1.48
54304889--54304920	15	2.1	15	100	0	64	43	6	31	18	1.75
54305771--54305802	13	2.5	13	89	0	55	53	12	6	28	1.62
54306085--54306151	34	2.0	34	93	0	116	37	19	10	32	1.86
54314365--54314395	14	2.2	14	94	0	53	48	12	0	38	1.42
54317102--54317161	25	2.3	25	74	23	61	35	0	3	61	1.12
54319412--54319466	7	7.9	7	91	0	92	29	52	0	18	1.45
54319903--54320468	114	5.0	114	89	0	855	29	25	21	24	1.99
54321571--54321689	43	2.7	45	76	3	125	48	16	14	20	1.80
54329435--54329473	11	3.5	11	83	13	53	58	17	10	12	1.61
54333209--54333279	3	23.3	3	94	2	124	64	0	32	2	1.08
54336013--54336053	19	2.2	19	82	4	57	58	4	12	24	1.53
54336014--54336053	18	2.2	18	86	8	55	57	5	12	25	1.55
54337924--54337994	32	2.2	33	82	7	83	28	4	4	63	1.32
54340061--54340176	44	2.6	44	95	0	205	22	20	8	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54342077--54342107	16	1.9	16	93	0	53	67	0	32	0	0.91
54346734--54347019	43	6.7	43	81	4	328	31	31	16	19	1.95
54346734--54347010	129	2.2	129	88	0	412	31	31	17	19	1.95
54348513--54348567	25	2.2	26	80	9	69	50	16	3	29	1.62
54359003--54359195	50	3.8	50	90	0	287	21	30	23	25	1.99
54359290--54359319	13	2.3	13	94	0	51	50	13	3	33	1.58
54362773--54362813	13	3.1	14	86	6	50	21	7	24	46	1.77
54362870--54362921	25	2.0	26	85	3	70	25	3	21	50	1.65
54364247--54364302	16	3.5	16	76	7	60	64	5	7	23	1.40
54365280--54365373	47	2.0	47	89	0	143	29	13	23	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228