genome.fa.s23.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  186  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55456481--55456609	26	5.3	26	67	23	102	23	14	0	62	1.32
55456490--55456614	21	5.5	21	71	20	90	24	13	0	61	1.32
55456481--55456630	47	3.2	47	89	2	221	22	14	0	62	1.35
55456661--55456853	44	4.4	44	91	0	314	37	2	10	49	1.50
55459646--55459943	159	1.9	161	94	1	528	36	15	7	39	1.77
55460236--55460356	61	2.0	61	90	0	188	35	20	19	23	1.96
55467834--55467891	25	2.3	25	79	5	64	43	1	8	46	1.44
55468113--55468174	30	2.1	31	81	6	74	50	9	0	40	1.35
55469678--55469723	22	2.0	23	83	4	58	10	13	10	65	1.48
55471407--55471443	11	3.5	11	82	17	51	67	0	0	32	0.91
55471475--55471512	15	2.5	15	91	0	58	42	36	7	13	1.73
55471478--55471526	15	3.4	15	83	8	57	34	40	8	16	1.78
55474696--55474742	16	2.7	17	83	9	60	14	8	2	74	1.15
55479688--55479727	17	2.4	16	84	8	53	80	2	12	5	0.98
55479705--55479740	12	2.9	12	91	4	54	80	0	16	2	0.83
55479689--55479741	24	2.3	22	81	15	63	79	1	15	3	0.96
55481004--55481269	50	5.4	50	68	6	191	30	21	21	25	1.98
55480981--55481326	100	3.5	99	87	2	471	31	20	21	26	1.98
55481363--55482235	45	19.4	45	84	6	1092	29	17	22	30	1.97
55482327--55482422	50	1.9	50	80	4	113	32	19	16	31	1.94
55482549--55482601	27	2.0	27	100	0	106	50	26	11	11	1.71
55482598--55482797	44	4.6	43	75	14	187	31	22	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55483491--55483526	17	2.2	17	95	5	65	11	11	0	77	0.99
55488615--55488652	20	1.9	20	94	0	67	47	5	0	47	1.24
55490575--55490601	7	3.9	7	100	0	54	40	0	0	59	0.98
55491299--55491345	20	2.3	21	74	3	51	10	19	0	70	1.16
55493652--55493686	17	2.0	18	88	5	54	45	0	5	48	1.26
55499152--55499202	19	2.6	19	78	9	59	29	17	19	33	1.95
55500958--55501035	24	3.2	24	71	10	70	35	20	25	17	1.95
55501077--55501134	26	2.3	26	84	3	73	32	22	27	17	1.96
55500970--55501134	24	6.8	25	69	12	76	33	22	25	18	1.97
55503395--55503494	42	2.4	42	84	0	128	21	33	26	20	1.97
55504516--55504556	20	2.0	22	85	9	59	39	31	4	24	1.76
55505144--55505272	25	5.2	25	70	10	79	37	17	25	19	1.94
55505182--55505274	49	1.9	48	84	2	123	35	18	26	19	1.95
55505257--55505423	25	6.7	24	72	9	95	38	20	24	16	1.93
55505303--55505364	24	2.5	26	84	5	83	38	22	24	14	1.91
55508765--55508799	18	2.0	18	94	5	63	31	0	0	68	0.90
55516003--55516046	18	2.4	18	88	11	63	25	15	11	47	1.79
55516004--55516060	18	3.3	18	70	25	52	26	15	12	45	1.82
55518563--55518606	23	2.0	23	82	13	56	84	2	6	6	0.86
55519298--55519328	15	2.0	16	93	6	55	45	19	3	32	1.66
55519606--55520164	54	11.4	52	66	19	203	31	19	21	27	1.97
55519489--55519827	143	2.4	142	86	2	464	30	19	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55519617--55520021	197	2.1	197	90	1	634	30	19	21	28	1.97
55519843--55520201	44	7.6	45	66	15	183	30	21	22	26	1.99
55519802--55520246	143	3.1	143	90	1	712	29	20	23	26	1.99
55520181--55520463	133	2.1	133	87	0	413	29	19	26	25	1.98
55520455--55520511	28	2.0	28	93	0	96	36	15	33	14	1.88
55522053--55522108	6	8.7	6	76	18	51	17	5	0	76	0.96
55522054--55522119	30	2.1	34	86	11	95	18	7	0	74	1.05
55525114--55525164	4	12.8	4	100	0	102	25	0	23	50	1.49
55529416--55529467	27	1.9	27	96	0	95	38	13	0	48	1.43
55530284--55530338	16	3.4	16	75	9	58	47	1	34	16	1.57
55531083--55531124	18	2.4	17	81	14	50	16	14	0	69	1.20
55531389--55531414	11	2.4	11	100	0	52	38	0	0	61	0.96
55532909--55533728	298	2.8	293	81	8	821	36	13	8	41	1.75
55538033--55538106	29	2.5	29	82	2	94	35	45	10	8	1.69
55538179--55538216	18	2.1	18	90	0	58	21	26	10	42	1.85
55541859--55542400	125	4.3	126	84	1	696	28	19	18	34	1.95
55542437--55542735	95	3.1	95	87	4	397	40	18	3	38	1.66
55549038--55549088	24	2.1	24	88	0	75	37	3	9	49	1.55
55552758--55552833	24	3.4	22	78	12	66	42	14	22	21	1.89
55556241--55556275	17	2.1	16	89	5	52	77	2	5	14	1.07
55557448--55557488	4	10.0	4	85	15	57	21	4	0	73	1.02
55564551--55564588	13	3.0	13	82	17	53	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55564569--55564866	105	2.9	103	76	9	304	42	11	2	43	1.52
55564665--55564843	97	1.9	96	86	1	259	41	13	1	43	1.55
55564772--55564860	26	3.4	26	75	9	81	40	10	2	47	1.50
55564821--55564879	21	2.8	21	73	17	59	40	10	0	49	1.37
55564786--55564860	26	2.9	25	80	7	87	40	12	2	45	1.55
55568948--55568976	14	2.1	14	100	0	58	34	20	24	20	1.97
55573871--55573917	6	7.8	6	95	0	85	63	0	2	34	1.06
55577772--55577802	14	2.2	14	94	0	53	38	0	12	48	1.42
55578179--55578383	103	2.0	103	95	0	365	40	12	24	22	1.89
55595073--55595098	12	2.2	12	100	0	52	42	26	7	23	1.81
55598798--55598834	19	1.9	19	89	10	58	37	0	8	54	1.30
55615280--55615315	18	1.9	18	88	5	54	47	5	25	22	1.73
55617451--55617494	18	2.3	19	81	18	56	65	0	29	4	1.12
55617560--55617696	66	2.0	68	83	6	172	57	2	32	6	1.39
55624464--55624499	18	2.1	16	90	10	54	33	5	0	61	1.19
55629263--55629327	22	3.0	21	75	6	58	67	12	9	10	1.42
55633409--55633443	17	2.1	17	89	10	54	62	0	2	34	1.10
55635276--55635347	35	2.0	37	89	7	114	34	1	0	63	1.03
55635309--55635359	26	2.0	24	85	7	66	31	0	1	66	1.03
55635625--55635659	17	2.0	18	94	5	63	71	5	5	17	1.25
55637041--55637069	12	2.3	13	94	5	51	51	0	27	20	1.47
55637221--55637310	26	3.3	27	84	9	112	42	11	16	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55644693--55645384	345	2.0	345	95	0	1233	36	8	16	38	1.78
55647916--55647951	17	2.1	17	94	0	63	36	8	13	41	1.75
55662785--55663512	146	5.2	144	90	7	1187	24	17	15	42	1.88
55662956--55663504	272	2.0	277	95	2	1002	25	16	14	42	1.87
55663234--55663512	145	2.0	143	94	3	501	25	17	15	42	1.88
55663538--55663663	63	1.9	66	85	7	177	26	21	25	26	1.99
55663725--55663750	12	2.2	12	100	0	52	46	30	15	7	1.74
55664486--55664567	30	3.1	25	73	23	71	67	0	0	32	0.91
55664973--55665029	16	3.3	16	79	15	60	35	0	3	61	1.13
55666403--55666491	36	2.5	36	85	7	101	34	4	13	47	1.63
55671777--55671812	17	2.1	17	94	0	63	41	13	8	36	1.75
55681921--55682010	26	3.3	27	84	9	112	30	16	11	42	1.83
55682160--55682188	12	2.3	13	94	5	51	20	27	0	51	1.47
55683564--55683598	17	2.0	18	94	5	63	17	5	5	71	1.25
55683875--55683945	34	2.0	36	91	5	119	63	0	1	35	1.03
55685775--55685809	17	2.1	17	89	10	54	34	2	0	62	1.10
55689496--55689534	9	4.3	9	87	9	53	61	0	0	38	0.96
55689496--55689534	10	4.3	10	78	21	50	61	0	0	38	0.96
55689887--55689928	22	2.0	21	85	4	57	9	11	11	66	1.44
55694710--55694745	18	2.1	16	90	10	54	61	0	5	33	1.19
55714603--55714638	18	2.1	16	90	10	54	33	5	0	61	1.19
55718045--55718076	16	1.9	17	93	6	57	18	12	12	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55719367--55719417	22	2.4	21	80	3	57	66	13	9	9	1.44
55719759--55719796	17	2.4	16	91	8	60	39	0	0	60	0.97
55727106--55727134	12	2.3	13	94	5	51	51	0	27	20	1.47
55727286--55727375	26	3.3	27	84	9	112	42	11	16	30	1.83
55734782--55735475	346	2.0	346	95	0	1253	37	8	16	38	1.78
55738012--55738047	17	2.1	17	94	0	63	36	8	13	41	1.75
55743536--55743566	9	3.4	9	95	0	53	41	22	9	25	1.84
55743565--55743639	37	2.0	37	92	0	123	45	13	4	37	1.62
55743565--55743656	37	2.5	37	85	7	107	46	13	4	35	1.62
55743773--55743850	38	2.0	39	92	2	131	19	2	26	51	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228