genome.fa.s23.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  117  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34498494--34498580	45	1.9	45	92	0	147	18	34	22	24	1.96
34498841--34498877	15	2.4	16	82	8	51	13	0	10	75	1.04
34509351--34509390	14	2.8	15	81	11	57	42	5	0	52	1.23
34509351--34509383	15	2.3	15	89	5	50	45	3	0	51	1.16
34509968--34510017	20	2.5	19	81	15	57	14	24	20	42	1.88
34527242--34527277	15	2.4	15	85	0	54	44	25	8	22	1.80
34533637--34533678	16	2.6	16	96	0	75	11	26	0	61	1.30
34533649--34533702	20	2.7	20	83	11	65	14	24	3	57	1.54
34533970--34534102	50	2.7	50	83	2	151	21	29	21	27	1.98
34535884--34535923	14	2.9	14	84	0	53	32	7	17	42	1.77
34535892--34535958	35	1.9	35	87	3	100	31	10	13	44	1.77
34535907--34535946	20	2.0	20	85	0	53	27	12	12	47	1.77
34543987--34544055	27	2.6	27	84	9	97	49	14	14	21	1.79
34544305--34544344	21	1.9	21	84	0	53	10	0	50	40	1.36
34546997--34547070	28	2.6	28	100	0	148	8	27	36	28	1.85
34557968--34558031	33	1.9	33	83	0	83	31	23	20	25	1.98
34558127--34558206	26	3.1	26	87	1	117	33	21	22	22	1.97
34558371--34558433	28	2.3	27	86	5	83	63	1	0	34	1.04
34561606--34561768	80	2.0	81	97	2	310	38	13	20	28	1.90
34568331--34568375	6	7.5	6	89	0	63	13	26	2	57	1.48
34568330--34568376	24	2.0	24	95	0	85	12	25	4	57	1.54
34575060--34575089	10	2.9	10	95	5	51	50	0	13	36	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34577582--34577708	27	4.7	27	81	6	132	26	14	28	30	1.95
34577582--34577697	54	2.1	55	84	6	148	29	12	28	29	1.94
34584185--34584349	40	4.1	40	87	3	208	24	21	27	26	1.99
34586703--34586735	17	1.9	17	100	0	66	33	18	24	24	1.97
34592473--34592649	45	4.0	45	83	4	198	20	16	27	35	1.94
34602216--34602394	40	4.5	40	86	5	220	26	21	26	26	1.99
34602262--34602427	80	2.1	79	84	5	210	27	20	26	25	1.99
34613047--34613084	17	2.2	17	100	0	76	26	18	21	34	1.96
34613047--34613091	17	2.6	17	92	0	63	28	17	20	33	1.95
34614369--34614393	8	3.1	8	100	0	50	36	36	0	28	1.58
34620019--34620056	10	3.5	11	86	13	53	34	0	2	63	1.09
34627598--34627820	39	5.7	40	83	8	248	26	22	26	25	2.00
34627650--34627853	79	2.6	79	82	8	195	26	21	26	25	1.99
34644144--34644366	39	5.7	40	83	8	248	26	22	26	25	2.00
34644196--34644399	79	2.6	79	82	8	195	26	21	26	25	1.99
34652177--34652227	25	2.0	25	100	0	102	31	27	7	33	1.85
34653897--34653952	17	3.5	16	79	16	62	16	7	3	73	1.20
34653902--34653931	14	2.1	15	93	6	53	13	6	3	76	1.11
34657569--34657654	44	1.9	44	84	11	113	46	2	8	43	1.46
34658119--34658155	19	2.0	18	89	5	56	51	2	2	43	1.30
34658116--34658160	20	2.2	20	84	7	56	51	2	2	44	1.26
34658151--34658193	17	2.5	17	82	10	52	44	0	4	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34658165--34658224	19	3.2	18	90	6	86	36	0	1	61	1.06
34658163--34658225	9	6.9	9	75	8	56	38	0	1	60	1.07
34667088--34667132	20	2.2	20	88	0	63	42	22	28	6	1.79
34667096--34667279	20	9.2	20	72	13	96	41	20	25	12	1.87
34667099--34667211	40	2.8	40	83	0	154	39	23	25	10	1.87
34667199--34667279	40	2.0	40	87	0	117	40	18	27	13	1.88
34670064--34670110	23	2.0	23	100	0	94	42	23	12	21	1.87
34678084--34678186	42	2.5	42	85	6	120	16	21	17	44	1.86
34678129--34678186	21	2.8	21	72	0	71	15	24	18	41	1.89
34679958--34679990	17	1.9	17	93	0	57	18	9	12	60	1.57
34679960--34680004	16	2.8	16	82	3	54	20	8	15	55	1.66
34681584--34681616	16	2.1	16	94	0	57	45	0	0	54	0.99
34685629--34685742	43	2.6	42	74	15	99	23	19	29	27	1.98
34692645--34692673	14	2.0	15	93	6	51	27	0	20	51	1.47
34693807--34693936	43	3.0	43	76	14	142	22	18	28	30	1.97
34698954--34698994	12	3.7	11	87	9	57	36	0	0	63	0.95
34710831--34710925	25	3.8	25	88	1	129	31	21	22	25	1.98
34729922--34729952	16	1.9	16	93	0	53	70	9	9	9	1.33
34737100--34737211	40	2.8	40	90	4	174	26	26	22	24	2.00
34738087--34738290	27	7.5	26	85	3	192	26	15	28	28	1.96
34738087--34738290	54	3.8	53	81	6	221	26	15	28	28	1.96
34738087--34738290	109	1.9	108	85	3	284	26	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34741464--34741556	19	5.1	19	68	12	68	30	11	11	46	1.76
34741445--34741565	54	2.2	54	94	0	206	31	11	14	42	1.82
34742200--34744237	862	2.4	857	90	2	3207	30	18	17	33	1.94
34746921--34746986	30	2.2	28	80	15	71	50	1	15	33	1.53
34746924--34746990	29	2.2	30	82	10	75	46	1	19	32	1.59
34747491--34747590	20	5.1	20	78	6	114	10	29	22	39	1.86
34750973--34751014	20	2.0	21	86	13	61	64	2	2	30	1.19
34753113--34753170	28	2.1	27	81	12	64	20	3	6	68	1.27
34753274--34753301	6	4.7	6	100	0	56	17	0	0	82	0.68
34753536--34753573	19	2.0	19	94	0	67	28	10	0	60	1.30
34758663--34758719	18	3.2	18	92	0	96	24	22	29	22	1.99
34772927--34773083	43	3.7	43	80	1	181	31	24	15	28	1.96
34777261--34777302	22	2.0	21	86	9	59	21	11	26	40	1.88
34780833--34781018	40	4.7	40	86	5	234	24	20	27	27	1.99
34780833--34781051	80	2.7	79	80	7	212	25	20	26	26	1.99
34782947--34783010	27	2.4	26	84	2	83	39	12	17	31	1.87
34809426--34809463	18	2.1	18	100	0	76	31	0	5	63	1.17
34811473--34811513	17	2.3	18	87	4	57	51	0	21	26	1.48
34813263--34813298	15	2.4	15	100	0	72	44	19	11	25	1.83
34816847--34816927	42	1.9	42	82	2	99	46	19	18	14	1.83
34816857--34816942	21	4.1	21	72	3	66	46	16	18	18	1.84
34821350--34821500	28	5.4	28	92	1	223	25	11	28	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34828204--34828245	21	2.0	21	85	0	57	69	2	14	14	1.30
34829684--34829806	55	2.2	56	88	2	176	26	12	28	33	1.92
34829684--34829806	28	4.4	28	90	2	176	26	12	28	33	1.92
34829709--34829819	28	4.0	27	90	3	116	28	11	26	33	1.91
34836495--34836536	21	2.0	21	85	0	57	69	2	14	14	1.30
34837975--34838097	55	2.2	56	88	2	176	26	12	28	33	1.92
34837975--34838097	28	4.4	28	90	2	176	26	12	28	33	1.92
34838000--34838110	28	4.0	27	90	3	116	28	11	26	33	1.91
34842261--34842290	15	1.9	16	93	6	53	16	16	6	60	1.56
34850520--34850616	49	2.0	48	87	2	140	43	20	23	12	1.86
34851904--34852231	88	3.7	88	92	0	539	31	21	25	21	1.98
34851910--34852231	44	7.3	44	85	0	419	30	21	26	21	1.98
34852263--34852517	88	2.9	88	88	0	377	26	23	25	25	2.00
34855455--34855562	43	2.6	42	84	11	125	48	15	19	16	1.82
34867103--34867167	28	2.3	28	100	0	130	24	24	30	20	1.98
34870009--34870088	24	3.3	24	85	0	115	47	23	8	20	1.77
34870009--34870117	24	4.5	24	82	2	103	45	21	9	23	1.80
34870156--34870255	27	3.7	27	83	0	119	25	19	18	38	1.93
34877222--34877385	45	3.6	44	79	7	150	43	12	19	24	1.85
34881947--34882174	32	7.2	32	79	5	221	35	22	22	20	1.96
34881947--34882174	96	2.4	95	80	5	262	35	22	22	20	1.96
34882181--34882234	26	2.1	26	85	0	72	37	24	22	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34882221--34882285	27	2.4	27	82	12	73	33	23	23	20	1.97
34882350--34882432	24	3.5	24	81	0	112	46	22	7	22	1.76
34882452--34882539	27	3.3	27	76	4	90	29	20	15	34	1.94
34882454--34882673	54	4.1	54	81	4	241	23	20	19	36	1.95
34882467--34882663	27	7.3	27	78	3	164	23	20	21	35	1.96
34893348--34893392	22	2.0	22	83	8	56	40	24	4	31	1.75
34894848--34895017	45	3.8	44	82	5	171	41	14	22	21	1.89
34894850--34895018	90	1.9	90	81	2	205	40	14	23	21	1.89
34895094--34895194	27	3.7	27	77	2	96	38	16	25	18	1.92
34901556--34901725	40	4.3	40	88	0	225	25	28	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228