genome.fa.s23.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  16  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5520489--5520558	34	2.1	34	97	0	131	45	21	12	20	1.84
5522086--5522118	16	2.1	16	94	0	57	48	27	9	15	1.74
5524506--5524559	13	4.0	14	81	15	53	42	1	1	53	1.22
5526796--5526908	41	2.8	41	87	2	147	30	25	17	25	1.97
5526809--5526915	41	2.6	41	89	0	151	31	23	17	27	1.97
5527169--5527222	12	4.2	12	77	13	63	44	9	3	42	1.54
5529324--5529524	41	4.9	41	88	3	289	17	16	26	38	1.92
5529324--5529567	82	3.0	82	83	6	228	18	18	26	36	1.94
5529329--5529589	123	2.1	123	79	8	273	18	18	24	38	1.93
5529960--5530029	16	4.4	16	67	16	56	27	1	21	50	1.57
5529962--5530042	23	3.5	23	72	22	80	23	1	24	50	1.56
5530053--5530093	22	1.9	21	85	14	57	19	0	24	56	1.42
5534691--5534826	66	2.1	66	90	2	211	41	17	26	14	1.88
5535175--5535307	43	3.1	43	90	4	198	29	18	25	26	1.98
5545420--5545658	119	2.0	119	100	0	478	30	19	13	35	1.90
5548764--5548791	6	4.7	6	100	0	56	0	0	14	85	0.59
5550942--5550986	22	2.1	21	83	4	54	42	0	0	57	0.98
5550925--5550986	21	2.9	21	79	9	63	40	0	0	59	0.97
5557631--5557689	27	2.2	27	82	11	68	59	3	6	30	1.40
5557683--5557721	16	2.4	16	82	0	51	51	2	10	35	1.50
5557810--5557834	3	8.3	3	100	0	50	68	0	0	32	0.90
5559269--5559697	132	3.2	132	93	1	716	26	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5559453--5559917	221	2.1	220	95	1	833	26	23	20	30	1.98
5559585--5559785	89	2.3	88	94	2	350	26	21	20	30	1.98
5559626--5559763	45	3.1	45	65	16	124	25	21	19	33	1.97
5559674--5559923	132	1.9	132	95	0	455	26	23	20	30	1.98
5560583--5561540	50	19.3	49	67	6	390	24	20	22	32	1.98
5560790--5561041	49	5.1	49	65	14	158	22	22	23	32	1.98
5560579--5561456	100	8.8	99	85	3	917	23	20	23	32	1.98
5560580--5561540	199	4.8	198	84	3	981	23	20	22	32	1.98
5561708--5562563	88	9.7	88	93	0	1433	25	24	22	27	2.00
5563644--5563687	21	2.1	21	86	0	61	25	38	11	25	1.89
5563776--5563819	7	6.6	7	79	10	56	15	15	0	68	1.22
5563777--5563815	20	2.0	20	94	0	69	15	12	0	71	1.14
5564680--5564715	16	2.2	16	90	0	54	8	2	5	83	0.89
5568733--5568791	27	2.2	27	82	11	68	59	3	6	30	1.40
5568785--5568823	16	2.4	16	82	0	51	51	2	10	35	1.50
5572459--5572587	67	1.9	67	96	0	240	29	33	15	21	1.94
5575667--5575730	30	2.1	31	82	8	78	45	3	1	50	1.27
5575978--5576028	26	2.0	26	100	0	102	17	15	31	35	1.92
5581866--5581907	20	2.1	20	82	8	50	26	9	11	52	1.68
5581950--5581992	21	2.0	21	95	0	77	27	0	37	34	1.57
5581973--5582005	16	2.1	16	94	0	57	33	0	36	30	1.58
5581984--5582078	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582239--5582273	18	2.0	17	88	5	52	54	0	0	45	0.99
5582197--5582269	27	2.7	27	76	8	76	52	2	0	45	1.15
5582159--5582429	144	1.9	147	95	3	494	46	3	2	47	1.32
5582383--5582417	18	2.0	17	88	5	52	54	0	0	45	0.99
5586315--5586344	12	2.5	12	88	0	51	6	16	0	76	0.99
5591151--5591223	25	2.9	25	81	0	92	35	17	24	21	1.95
5611852--5611909	22	2.7	21	84	7	80	32	3	18	44	1.67
5611862--5611906	23	2.0	22	91	4	72	31	4	17	46	1.68
5613455--5615013	778	2.0	777	96	0	2893	30	18	26	24	1.98
5617774--5617831	22	2.7	21	84	7	80	32	3	18	44	1.67
5617784--5617828	23	2.0	22	91	4	72	31	4	17	46	1.68
5619202--5619234	15	2.2	15	100	0	66	57	6	0	36	1.23
5622332--5622405	38	1.9	38	94	0	130	33	9	10	45	1.71
5623765--5624009	118	2.1	118	90	3	379	28	17	20	32	1.96
5627524--5627555	16	2.0	16	100	0	64	25	0	37	37	1.56
5627536--5627626	45	2.0	44	82	2	110	29	5	28	36	1.80
5627791--5627825	18	2.0	17	88	5	52	54	0	0	45	0.99
5627685--5627994	157	2.0	157	96	0	575	44	3	4	47	1.38
5627928--5627969	15	2.7	16	82	14	52	52	2	0	45	1.13
5627937--5627978	15	2.9	15	82	10	52	52	0	0	47	1.00
5627748--5627997	82	3.1	82	65	22	222	48	3	2	46	1.33
5627749--5628079	157	2.1	155	79	7	348	47	3	3	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5633482--5633573	20	4.8	19	76	19	77	67	1	4	27	1.16
5633481--5633600	9	12.9	9	72	18	86	67	1	4	26	1.18
5633514--5633601	38	2.4	38	80	12	96	69	1	4	25	1.14
5633472--5633585	59	1.9	58	81	10	133	67	1	3	27	1.17
5634114--5634157	21	2.1	20	84	16	54	34	0	2	63	1.07
5634076--5634152	37	2.1	37	80	9	86	24	2	5	67	1.24
5634128--5634177	23	2.3	23	86	6	68	42	2	0	56	1.11
5649326--5649603	138	2.0	139	98	0	540	41	16	20	21	1.90
5668562--5668728	87	1.9	86	83	8	214	45	2	12	38	1.57
5668723--5668767	20	2.2	20	88	0	63	37	0	11	51	1.38
5668746--5668821	22	3.8	20	75	11	68	44	2	9	43	1.50
5668736--5668826	20	4.4	20	76	10	69	39	2	10	47	1.51
5668839--5668887	20	2.5	20	89	0	71	38	0	14	46	1.44
5668851--5668945	20	4.8	20	72	12	79	35	5	15	43	1.70
5670927--5670962	18	2.0	18	88	0	54	66	2	13	16	1.36
5686339--5686425	44	2.0	44	100	0	174	54	9	11	25	1.66
5691515--5691680	19	8.7	19	65	23	75	34	0	13	51	1.45
5691598--5691680	27	3.1	27	92	1	141	36	1	13	49	1.50
5691866--5691909	16	2.8	16	82	0	61	56	2	2	38	1.24
5691942--5692023	38	2.2	38	100	0	164	40	2	2	54	1.26
5692173--5692283	19	5.6	19	69	26	88	52	13	0	34	1.41
5692279--5692345	27	2.5	27	95	0	116	13	32	22	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5697201--5697277	29	2.6	30	81	10	86	48	12	1	37	1.50
5699952--5699980	14	2.1	14	93	6	51	72	0	6	20	1.07
5700124--5700432	37	7.9	37	68	20	139	51	3	1	43	1.28
5700161--5700207	23	2.0	24	84	15	64	53	4	2	40	1.32
5700087--5700445	120	3.0	120	95	0	641	52	3	1	42	1.27
5700188--5700250	26	2.5	25	82	10	83	58	0	0	41	0.98
5700317--5700357	13	3.2	12	80	12	55	58	0	0	41	0.98
5704341--5704382	11	3.7	12	78	12	52	30	30	0	38	1.58
5704370--5704426	29	2.0	28	82	3	69	29	21	1	47	1.61
5705375--5705412	20	1.9	20	89	10	60	36	2	5	55	1.37
5706702--5706891	70	2.7	70	96	0	346	38	0	12	47	1.46
5706712--5706891	25	7.6	25	69	17	134	39	0	12	47	1.46
5709744--5710089	124	2.8	124	90	1	561	32	22	16	27	1.96
5713263--5713287	3	8.3	3	100	0	50	0	32	68	0	0.90
5713457--5713498	18	2.3	18	87	0	57	14	9	64	11	1.50
5713660--5713699	21	1.9	21	89	0	62	15	17	55	12	1.70
5718039--5718085	23	2.0	23	83	0	58	19	2	27	51	1.58
5725831--5725905	22	3.3	22	77	5	69	65	1	4	29	1.19
5725866--5725912	24	2.0	24	83	8	60	65	2	0	31	1.04
5725860--5725915	16	3.4	16	74	18	53	67	1	0	30	1.01
5732940--5732969	6	5.0	6	100	0	60	16	0	0	83	0.65
5732962--5732991	11	2.7	11	89	0	51	40	3	0	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5732976--5733025	26	2.0	24	84	7	64	32	0	2	66	1.03
5734309--5734381	22	3.2	22	75	14	69	39	10	1	47	1.47
5734397--5734479	43	1.9	43	87	4	123	37	9	1	51	1.42
5747028--5747233	113	1.8	113	85	2	279	45	8	4	41	1.56
5758071--5758127	20	2.8	21	78	2	62	61	5	8	24	1.46
5758409--5758449	21	2.0	21	95	4	75	58	0	17	24	1.38
5758388--5758483	21	4.7	21	73	13	58	63	5	14	16	1.47
5758499--5758547	22	2.2	22	96	0	89	53	20	16	10	1.72
5758893--5759069	39	4.5	41	73	12	118	55	8	18	18	1.67
5758905--5759393	59	8.2	57	71	14	244	56	6	16	19	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228