genome.fa.s23.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  109  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779004--31779333	177	1.9	176	84	0	444	30	15	9	43	1.79
31781538--31781567	12	2.5	12	100	0	60	43	0	0	56	0.99
31782649--31782684	6	6.0	6	90	0	54	13	19	2	63	1.41
31783041--31783091	20	2.6	20	78	12	52	58	3	0	37	1.16
31783061--31783106	17	2.8	17	87	9	60	63	0	0	36	0.95
31783061--31783124	26	2.5	25	82	12	69	65	0	1	32	1.02
31783147--31783185	16	2.4	16	82	0	51	0	20	0	79	0.73
31795207--31795252	23	2.0	24	86	4	67	76	4	2	17	1.06
31808793--31808822	15	2.0	15	100	0	60	33	53	13	0	1.40
31809036--31809080	17	2.5	19	89	7	67	6	24	0	68	1.13
31809056--31809083	14	2.0	14	100	0	56	7	28	0	64	1.20
31809154--31809187	17	2.0	17	88	0	50	5	5	17	70	1.28
31809154--31809195	6	7.2	6	91	5	50	4	9	19	66	1.38
31812247--31812284	18	2.2	17	90	4	58	34	2	0	63	1.09
31812370--31812522	18	8.8	18	66	18	74	42	0	2	54	1.19
31812148--31812781	120	5.3	120	95	1	1089	43	0	4	51	1.27
31813173--31813227	15	3.5	15	79	18	58	61	1	0	36	1.06
31813097--31813401	94	3.1	94	91	5	466	53	5	0	40	1.32
31813099--31813226	18	6.9	18	67	16	73	54	4	0	39	1.27
31813253--31813400	38	4.2	38	67	22	122	54	6	0	39	1.30
31813284--31813429	28	5.5	28	66	22	91	56	4	0	39	1.24
31813190--31813897	120	6.0	122	87	8	1027	53	5	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31813388--31813453	15	4.4	14	73	19	53	62	0	0	37	0.96
31813400--31813452	16	3.2	16	86	10	63	64	0	0	35	0.94
31813385--31813453	28	2.3	29	80	14	77	60	0	0	39	0.97
31813415--31813452	18	2.2	18	95	4	69	65	0	0	34	0.93
31813311--31813897	239	2.4	238	92	3	944	52	5	1	40	1.30
31813778--31813824	18	2.6	18	86	6	60	55	0	0	44	0.99
31813791--31813955	79	2.1	79	84	10	230	50	7	1	40	1.41
31813335--31813886	61	9.2	59	66	13	268	53	5	1	40	1.30
31813811--31813957	79	1.9	79	92	0	240	48	8	2	41	1.44
31815340--31815443	49	2.1	49	92	0	172	48	13	7	30	1.71
31819144--31819190	22	2.2	21	96	3	85	53	6	29	10	1.60
31820107--31820174	21	3.3	21	73	19	79	35	2	2	58	1.28
31820096--31820184	41	2.2	41	100	0	178	31	2	5	60	1.32
31820262--31820307	21	2.2	21	77	14	51	30	0	13	56	1.37
31820363--31820433	22	3.2	22	69	11	63	16	4	15	63	1.46
31824703--31824774	35	2.0	36	84	12	96	63	22	1	12	1.36
31830483--31830555	30	2.4	30	77	8	78	43	12	2	41	1.56
31830566--31830599	9	3.8	9	96	0	59	64	0	0	35	0.94
31834082--31834109	5	5.6	5	100	0	56	82	0	17	0	0.68
31844747--31844849	51	2.0	51	98	0	197	20	23	13	42	1.87
31845840--31845904	32	2.0	32	96	0	121	12	16	24	46	1.82
31847443--31847519	14	5.0	15	71	20	52	42	14	9	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31847459--31847498	20	2.0	20	90	0	62	50	12	10	27	1.72
31847447--31847513	34	1.9	35	90	3	109	46	13	8	31	1.74
31848506--31848582	34	2.3	33	91	6	129	24	20	24	29	1.99
31848848--31848987	27	5.3	27	88	5	187	37	15	15	30	1.89
31848848--31848999	54	2.9	54	88	3	211	37	14	14	33	1.87
31849932--31850033	33	3.1	33	81	5	134	43	12	23	20	1.86
31854763--31854793	13	2.4	13	100	0	62	41	9	6	41	1.63
31855200--31855228	10	2.9	10	100	0	58	41	17	0	41	1.49
31856778--31856831	27	2.0	27	82	7	65	37	0	9	53	1.33
31857664--31857701	18	2.2	18	85	4	51	28	18	7	44	1.78
31861095--31861139	21	2.1	21	91	0	72	33	4	17	44	1.69
31861720--31861759	20	2.1	19	85	4	53	17	7	10	65	1.46
31867573--31867598	13	2.0	13	100	0	52	61	0	7	30	1.24
31867834--31867906	34	2.2	33	85	4	101	24	21	24	28	1.99
31868176--31868381	27	7.6	27	87	0	286	36	14	16	32	1.89
31875780--31875919	27	5.3	26	85	5	183	38	14	15	31	1.88
31878069--31878120	21	2.5	20	71	3	50	46	17	19	17	1.85
31878048--31878237	42	4.6	41	76	9	136	44	15	22	17	1.87
31881956--31882160	27	7.6	27	85	4	189	28	27	16	27	1.97
31894361--31894425	21	3.0	22	71	8	62	44	20	21	13	1.86
31894365--31894605	42	5.7	42	77	6	188	45	17	21	16	1.86
31894533--31894600	21	3.2	21	67	19	52	45	17	19	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31899427--31899464	18	2.1	18	90	0	58	28	2	15	52	1.56
31899480--31899519	14	2.7	15	88	3	55	30	0	10	60	1.30
31899480--31899525	15	3.1	15	87	3	58	28	0	10	60	1.30
31913902--31913951	12	4.4	12	78	9	52	52	0	0	48	1.00
31913912--31913959	23	2.2	21	88	7	69	43	0	0	56	0.99
31913911--31913954	12	3.8	12	80	17	56	47	0	0	52	1.00
31915401--31915433	5	6.6	5	86	13	50	21	0	0	78	0.75
31919280--31919453	70	2.5	70	82	5	199	27	22	20	29	1.99
31924156--31924202	10	4.6	10	85	12	51	34	0	4	61	1.15
31938875--31939113	132	1.8	132	92	0	406	32	22	20	24	1.98
31939009--31939201	88	2.2	88	92	0	314	31	22	21	25	1.98
31938875--31939147	132	2.1	132	88	1	395	32	21	21	24	1.98
31938872--31939337	217	2.1	220	90	2	717	31	22	22	23	1.98
31939097--31939497	132	3.1	131	89	2	574	29	20	24	25	1.99
31940294--31940333	21	2.0	21	86	13	59	5	15	2	77	1.04
31946297--31946322	12	2.2	12	100	0	52	50	7	0	42	1.31
31946804--31946981	27	6.6	27	83	3	205	26	15	28	29	1.96
31946805--31946960	82	1.9	81	88	3	233	26	15	28	29	1.96
31946801--31946981	82	2.2	81	83	2	229	27	15	27	29	1.96
31952242--31952292	25	2.0	25	81	7	59	9	35	0	54	1.33
31969634--31969857	40	5.6	40	86	5	285	24	21	27	25	1.99
31969634--31969856	119	1.9	119	83	6	281	24	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31972123--31972165	17	2.5	18	85	7	63	9	2	18	69	1.26
31977844--31977922	37	2.1	37	90	0	122	25	31	18	24	1.98
31978041--31978399	47	7.5	47	93	2	583	29	29	8	32	1.87
31978041--31978390	49	7.3	49	93	3	581	29	29	8	32	1.87
31978041--31978390	96	3.6	96	95	1	596	29	29	8	32	1.87
31981741--31981785	23	1.9	24	86	4	65	26	51	2	20	1.59
31988643--31988698	26	2.2	26	90	0	85	41	12	12	33	1.81
31994809--31994941	41	3.2	41	86	0	185	20	21	27	30	1.98
31994772--31994980	82	2.6	81	82	6	217	22	21	24	31	1.98
31994809--31994999	41	4.7	40	79	5	159	22	21	24	31	1.98
31994809--31994980	82	2.1	82	85	2	229	20	22	25	31	1.98
32000127--32000391	43	6.2	43	86	0	336	19	18	32	29	1.96
32000147--32000381	129	1.8	127	89	1	371	20	18	33	27	1.96
32001090--32001129	14	2.7	15	88	3	55	30	0	10	60	1.30
32001090--32001135	15	3.1	15	87	3	58	28	0	10	60	1.30
32002684--32002821	62	2.2	62	87	5	199	32	28	20	18	1.96
32004357--32004391	15	2.3	15	100	0	70	48	20	5	25	1.71
32004597--32004842	119	2.1	119	99	0	483	52	9	8	29	1.64
32006457--32006632	95	1.9	95	89	2	273	35	17	14	32	1.89
32017891--32018289	80	4.9	80	73	14	252	45	8	13	32	1.74
32017826--32018292	86	5.7	85	74	13	343	44	8	13	33	1.75
32017826--32018290	166	2.9	159	80	9	446	44	8	13	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32018947--32018997	25	2.0	25	92	0	84	50	7	15	25	1.71
32018944--32019032	30	3.1	30	81	12	107	42	6	23	26	1.79
32023601--32023651	25	2.0	25	96	0	93	50	7	17	23	1.72
32023598--32023686	30	3.1	30	84	12	116	42	6	24	25	1.79
32028750--32028785	18	1.9	18	88	5	54	58	2	0	38	1.13
32028760--32028825	30	2.2	29	82	15	80	56	0	0	43	0.99
32028891--32028916	9	2.9	9	100	0	52	42	0	0	57	0.98
32029376--32030205	416	2.0	416	99	0	1624	33	12	21	32	1.91
32040062--32040112	21	2.4	22	80	6	59	27	19	35	17	1.94
32040875--32040904	15	2.1	15	93	6	53	0	13	0	86	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228