genome.fa.s23.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  141  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42332738--42332920	40	4.6	40	81	8	196	27	27	21	24	1.99
42337442--42337493	24	2.2	24	89	0	77	36	3	9	50	1.54
42348565--42348681	56	2.1	56	100	0	234	40	34	8	17	1.80
42352793--42352928	45	3.0	45	85	2	193	33	16	23	25	1.96
42354575--42354626	24	2.2	24	100	0	104	46	21	15	17	1.84
42358593--42358648	22	2.5	22	83	11	78	46	3	12	37	1.59
42359985--42360027	18	2.4	18	92	0	68	30	2	6	60	1.35
42365581--42365631	23	2.2	23	92	0	84	27	9	21	41	1.84
42373210--42373243	17	2.0	17	100	0	68	64	5	0	29	1.17
42373409--42373466	29	2.0	30	83	6	75	60	5	13	20	1.53
42374745--42375217	44	10.9	45	68	17	164	27	22	19	30	1.98
42374746--42375318	217	2.6	217	93	0	966	28	21	19	29	1.98
42375111--42375232	44	2.8	42	77	15	113	25	22	19	31	1.98
42399454--42399511	29	1.9	31	89	6	93	43	8	20	27	1.81
42399978--42400321	102	3.4	101	85	3	424	29	14	25	30	1.95
42399978--42400315	51	6.7	50	79	8	319	28	14	25	30	1.95
42404095--42404202	50	2.2	50	94	0	189	29	16	24	29	1.97
42422395--42422551	68	2.3	68	83	2	181	38	14	19	26	1.91
42434210--42434242	17	1.9	17	88	11	50	33	12	27	27	1.92
42438096--42438284	51	3.7	51	71	4	150	25	16	25	31	1.96
42459341--42459378	20	2.0	20	89	5	60	26	7	15	50	1.72
42460985--42461028	21	2.0	22	86	4	63	52	4	9	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42463770--42463797	14	2.0	14	100	0	56	57	0	7	35	1.26
42466744--42466777	14	2.4	14	100	0	68	55	14	0	29	1.40
42468650--42468684	17	2.1	17	94	0	61	68	5	14	11	1.37
42469539--42469647	6	17.7	6	70	9	76	71	1	19	7	1.19
42469611--42469677	30	2.4	29	80	14	79	68	0	17	13	1.21
42469635--42469669	18	1.9	18	88	11	54	57	0	20	22	1.41
42485241--42485279	20	2.0	20	84	0	51	38	10	0	51	1.36
42509181--42509233	24	2.2	25	80	10	65	30	3	13	52	1.57
42511149--42511201	24	2.2	25	83	10	74	32	1	13	52	1.51
42512275--42512340	19	3.5	20	73	12	59	63	4	4	27	1.33
42512237--42512340	19	5.5	19	67	17	56	61	3	4	29	1.34
42512457--42512490	10	3.3	10	84	8	50	67	2	0	29	1.05
42512579--42512603	12	2.1	12	100	0	50	16	8	0	76	1.02
42512617--42512660	19	2.3	19	80	7	54	34	2	0	63	1.07
42512797--42512981	92	2.0	89	86	5	255	31	12	19	36	1.89
42512827--42513001	92	1.9	91	84	5	237	35	11	18	34	1.87
42513415--42513476	10	6.5	10	76	12	60	64	1	1	32	1.13
42513415--42513504	29	3.1	28	76	16	85	61	2	6	30	1.34
42513420--42513477	18	3.2	18	76	9	55	62	1	1	34	1.16
42513415--42513475	19	3.2	19	81	9	63	65	1	1	31	1.12
42513745--42513808	28	2.3	28	84	10	78	31	1	4	62	1.25
42523487--42523559	6	12.5	6	77	9	62	76	1	1	20	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42552878--42552947	36	2.0	35	91	2	113	40	11	5	42	1.65
42555828--42555871	22	2.0	22	100	0	88	45	4	0	50	1.22
42567660--42568112	205	2.2	206	81	3	502	38	20	22	18	1.93
42567591--42568145	69	8.1	69	76	3	395	39	20	21	18	1.93
42580003--42580042	21	2.0	21	85	5	55	60	15	7	17	1.57
42585237--42585532	51	5.9	50	76	5	283	30	27	16	25	1.97
42585245--42585530	101	2.8	100	82	4	322	31	26	16	25	1.97
42585494--42585526	14	2.5	13	90	9	50	39	27	9	24	1.85
42585689--42585717	15	2.0	15	93	6	51	48	6	0	44	1.29
42590303--42590689	47	7.9	47	88	7	558	31	8	30	29	1.86
42590407--42590687	155	1.8	153	92	1	481	31	7	30	29	1.86
42590501--42590620	59	2.0	60	95	3	215	30	6	30	32	1.83
42590808--42590886	37	2.1	37	90	0	122	24	18	31	25	1.98
42591736--42591817	42	2.0	42	82	4	103	31	24	14	29	1.95
42594605--42594840	101	2.3	101	79	6	255	30	26	16	26	1.97
42594503--42594832	51	6.5	51	72	7	224	31	24	17	26	1.97
42594503--42594832	152	2.2	152	87	3	477	31	24	17	26	1.97
42595006--42595062	30	1.9	30	89	7	89	29	19	5	45	1.72
42603229--42603272	23	1.9	23	90	0	70	75	2	18	4	1.09
42610067--42610381	42	7.5	42	80	3	305	29	21	19	29	1.98
42610121--42610381	84	3.1	84	88	0	398	30	19	19	30	1.96
42613704--42613764	27	2.3	27	82	5	70	36	21	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42618664--42618697	15	2.3	15	90	5	52	2	5	23	67	1.26
42620111--42620396	120	2.4	118	92	4	450	43	2	4	50	1.35
42620241--42620296	15	4.1	14	78	14	55	41	0	0	58	0.98
42620343--42620613	151	1.8	150	95	2	501	46	3	3	46	1.35
42620499--42620533	18	2.0	17	88	5	52	45	0	0	54	0.99
42620680--42620787	45	2.6	43	82	8	125	31	29	5	33	1.80
42620766--42620803	16	2.4	16	90	0	58	34	34	0	31	1.58
42624198--42624276	28	2.9	27	88	3	122	45	1	8	44	1.43
42626235--42626361	41	3.2	40	82	7	168	55	4	11	27	1.55
42629383--42629461	19	4.2	19	72	18	58	59	1	2	36	1.19
42632800--42632947	67	2.2	67	87	0	224	41	18	17	21	1.90
42635630--42635727	48	2.0	48	100	0	196	34	12	30	22	1.91
42637547--42637584	17	2.2	17	90	0	58	63	0	5	31	1.17
42670943--42671190	40	6.2	40	93	0	372	24	20	28	27	1.99
42670888--42671190	80	3.8	80	87	2	378	24	20	27	27	1.99
42675757--42675804	22	2.0	25	88	11	75	52	2	6	39	1.39
42675911--42675968	20	2.8	19	82	17	64	43	10	10	36	1.73
42678143--42678213	20	3.5	20	79	9	81	43	15	4	36	1.66
42680433--42680490	20	2.9	19	82	5	71	39	8	12	39	1.73
42686268--42686296	11	2.7	11	94	5	51	31	0	0	68	0.89
42692328--42692362	18	1.9	18	88	0	52	2	40	20	37	1.67
42695078--42695136	26	2.3	26	75	13	61	27	5	15	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42696544--42696577	17	2.1	17	94	5	61	17	14	23	44	1.86
42697685--42697711	14	1.9	14	100	0	54	22	0	33	44	1.53
42698686--42698849	85	1.9	85	91	0	265	25	22	22	29	1.99
42698789--42698906	57	2.1	57	96	1	220	24	26	22	26	2.00
42698893--42699078	60	3.1	60	86	1	248	12	32	19	34	1.90
42698966--42699078	20	5.7	20	68	12	61	10	32	21	35	1.88
42702314--42702352	4	9.8	4	82	0	51	53	5	20	20	1.64
42708503--42708553	23	2.2	24	82	3	59	37	0	1	60	1.08
42713167--42713218	26	2.0	26	100	0	104	42	19	11	26	1.85
42718702--42719234	140	3.8	140	84	3	698	51	12	12	23	1.75
42718702--42719234	278	1.9	282	88	1	813	51	12	12	23	1.75
42724664--42724710	18	2.6	18	96	3	85	61	0	2	36	1.08
42725169--42725205	19	1.9	19	88	0	56	59	0	2	37	1.12
42725893--42725929	16	2.3	17	81	13	51	54	2	2	40	1.29
42731970--42732004	3	11.7	3	100	0	70	68	0	0	31	0.90
42732702--42732787	29	3.0	29	75	11	79	38	4	23	33	1.75
42735012--42735116	43	2.5	43	80	7	108	27	18	20	33	1.96
42737579--42737637	31	1.9	31	96	0	109	32	11	6	49	1.66
42737759--42737804	18	2.5	19	75	10	51	56	0	8	34	1.30
42739740--42739796	29	1.9	30	82	3	71	57	7	5	29	1.47
42741055--42741086	14	2.3	15	89	10	50	62	15	6	15	1.51
42742217--42742353	69	2.0	68	97	1	256	40	24	8	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42744359--42744591	45	5.2	45	90	3	328	34	27	16	21	1.95
42746021--42746114	29	3.1	29	81	4	107	38	18	9	34	1.83
42746281--42746347	29	2.3	31	80	15	79	37	11	14	35	1.84
42753805--42753830	9	2.9	9	100	0	52	88	0	0	11	0.52
42759512--42759575	27	2.4	28	89	5	105	53	15	1	29	1.52
42760236--42760373	49	2.8	49	85	1	179	23	34	18	24	1.96
42763202--42763432	114	2.0	114	93	0	390	40	5	7	46	1.55
42764881--42764919	17	2.4	16	82	4	51	35	0	0	64	0.94
42765156--42765197	21	2.0	22	85	4	59	23	0	7	69	1.13
42772245--42772281	15	2.6	14	91	8	58	27	0	24	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228