genome.fa.s23.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  182  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54365865--54366461	9	64.6	9	70	24	231	46	15	0	37	1.48
54365904--54365936	16	2.1	16	100	0	66	45	24	0	30	1.53
54366062--54366156	22	4.5	21	73	17	72	47	16	0	35	1.47
54365923--54366466	103	5.2	103	83	10	621	46	15	0	38	1.48
54366354--54366429	16	4.8	16	75	15	86	44	22	0	32	1.53
54366371--54366452	22	3.6	22	75	15	85	46	18	0	35	1.49
54366354--54366460	47	2.3	47	96	0	196	45	19	0	34	1.51
54366297--54366413	31	3.5	31	75	20	117	46	16	0	37	1.47
54372075--54372272	87	2.3	87	85	5	258	39	15	31	13	1.85
54372228--54372293	21	3.1	21	82	0	78	33	12	45	9	1.73
54372603--54373007	43	9.5	42	88	2	474	23	21	24	30	1.99
54376185--54376223	18	2.2	18	100	0	78	28	15	10	46	1.78
54376618--54376681	23	2.7	23	71	17	60	14	12	9	64	1.50
54380198--54380290	28	3.4	28	73	4	73	17	2	34	46	1.60
54389054--54389208	66	2.3	66	89	0	247	32	25	15	27	1.95
54389192--54389248	29	2.0	29	89	0	87	29	14	21	35	1.92
54389138--54389314	95	1.9	95	86	2	257	31	20	15	32	1.93
54389241--54389363	65	1.9	65	82	1	156	26	20	16	36	1.93
54392053--54392081	6	4.8	6	100	0	58	65	17	0	17	1.27
54392116--54392196	9	8.9	9	81	6	74	28	12	19	39	1.88
54392121--54392196	18	4.2	18	86	6	100	28	11	19	39	1.87
54392121--54392196	27	2.8	27	78	11	84	28	11	19	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54393567--54393652	34	2.4	35	86	7	104	46	0	2	51	1.13
54393581--54393652	34	2.1	35	92	2	119	48	0	0	51	1.00
54393585--54393654	11	6.2	12	72	22	53	47	0	0	52	1.00
54393595--54393653	23	2.6	23	81	7	68	44	0	0	55	0.99
54393605--54393656	12	4.4	12	73	22	56	44	0	0	55	0.99
54396230--54396283	24	2.3	23	80	6	63	38	3	20	37	1.70
54396486--54396521	19	1.9	19	88	5	56	13	11	0	75	1.06
54396781--54396852	31	2.3	31	97	0	135	37	16	15	30	1.90
54398355--54398397	23	2.0	21	86	9	59	58	4	30	6	1.45
54403295--54403337	23	2.0	21	86	9	59	58	4	30	6	1.45
54411852--54411972	46	2.7	46	79	3	147	19	14	16	50	1.78
54413072--54413096	13	1.9	13	100	0	50	28	16	0	56	1.41
54414666--54414871	32	6.8	32	74	14	148	27	2	17	51	1.60
54414671--54414871	91	2.2	91	94	1	350	27	2	17	51	1.60
54414712--54414864	59	2.5	59	78	9	164	26	3	18	51	1.63
54416108--54416146	20	2.0	20	89	0	60	51	0	2	46	1.14
54417077--54417184	44	2.5	44	78	3	137	20	14	13	50	1.77
54419746--54419790	23	2.0	23	86	8	65	46	6	6	40	1.56
54421658--54422126	92	5.1	92	98	0	904	40	6	4	49	1.48
54421658--54422126	183	2.6	184	97	0	904	40	6	4	49	1.48
54422123--54422573	9	51.9	9	66	15	119	46	18	4	30	1.69
54422232--54422416	37	5.0	36	77	5	145	49	16	3	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54422250--54422416	57	3.0	56	95	1	291	50	15	3	30	1.61
54422401--54422522	16	8.0	16	68	20	82	45	18	5	29	1.73
54422387--54422466	41	2.0	41	87	0	115	45	23	3	27	1.70
54422421--54422552	25	5.3	25	71	5	70	43	20	5	31	1.74
54424979--54425126	66	2.2	66	88	4	210	39	18	29	12	1.88
54425096--54425204	21	5.2	21	81	0	65	34	17	42	5	1.72
54425562--54426044	43	11.3	43	78	4	420	23	20	29	27	1.98
54425562--54426044	130	3.8	129	76	4	411	23	20	29	27	1.98
54425562--54426044	173	2.8	172	78	6	449	23	20	29	27	1.98
54425887--54426044	85	1.9	85	83	2	210	22	26	26	24	2.00
54426129--54426171	22	2.0	22	85	0	59	44	25	18	11	1.84
54426989--54427022	9	3.7	9	88	4	50	67	0	0	32	0.91
54427326--54427374	17	2.9	16	84	6	53	51	2	0	46	1.12
54429219--54429274	24	2.3	25	81	9	62	25	1	5	67	1.21
54429303--54429345	18	2.4	18	88	7	61	23	11	4	60	1.50
54429306--54429347	17	2.5	16	82	17	50	21	11	4	61	1.48
54429342--54429391	22	2.2	21	82	10	55	20	0	6	74	1.03
54429569--54429756	95	2.0	96	90	3	299	27	10	23	38	1.87
54441197--54441315	41	3.0	39	71	20	102	21	16	30	31	1.95
54441189--54441381	75	2.5	81	80	12	217	22	17	29	31	1.97
54441589--54441629	20	2.1	20	86	4	57	39	29	19	12	1.88
54442744--54442792	17	2.9	16	84	6	53	51	2	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54443443--54443469	14	1.9	14	100	0	54	66	18	0	14	1.25
54444897--54445081	93	2.0	93	92	4	309	27	11	23	37	1.89
54456433--54457273	44	19.2	44	62	16	163	30	19	24	25	1.98
54457358--54457563	44	4.7	44	68	7	130	31	18	23	26	1.98
54457507--54457600	44	2.1	44	84	2	116	28	20	26	24	1.99
54457530--54457641	44	2.6	42	83	8	127	28	20	21	29	1.98
54456383--54457540	132	8.8	132	92	0	1861	31	19	24	25	1.98
54459533--54459722	98	1.9	98	91	0	308	27	10	24	37	1.88
54466536--54466571	15	2.5	15	90	4	56	25	8	0	66	1.19
54467495--54467655	68	2.4	68	84	3	200	26	14	28	30	1.95
54472747--54472786	20	2.0	20	90	9	64	47	0	12	40	1.41
54472902--54472952	12	4.3	12	82	5	50	66	1	3	27	1.20
54478193--54478242	24	2.1	24	80	0	64	50	6	8	36	1.57
54478282--54478318	16	2.3	16	95	0	65	37	2	0	59	1.12
54478321--54478363	18	2.5	17	77	7	50	81	2	11	4	0.93
54478384--54478408	13	1.9	13	100	0	50	72	0	24	4	1.02
54479315--54479371	22	2.6	23	86	8	82	12	26	19	42	1.86
54480829--54480980	27	5.7	27	82	3	182	19	14	22	44	1.86
54480816--54480942	27	4.8	26	84	6	141	19	16	22	41	1.90
54480828--54480969	54	2.7	53	90	2	214	19	14	23	42	1.88
54485217--54485343	27	4.8	27	80	5	152	24	16	17	41	1.89
54493159--54493192	18	1.9	17	88	5	50	61	14	5	17	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54493490--54493533	16	2.8	15	86	13	54	59	6	0	34	1.24
54493579--54493633	28	2.0	28	82	7	67	61	0	5	32	1.19
54493666--54493718	26	2.0	24	82	13	61	54	0	9	35	1.33
54493918--54493959	3	13.7	3	80	14	50	61	0	2	35	1.09
54493922--54493959	14	2.7	14	95	0	67	60	0	2	36	1.11
54493918--54493959	17	2.5	17	85	11	59	61	0	2	35	1.09
54494749--54494782	16	2.2	15	89	5	50	0	11	5	82	0.83
54511528--54511601	22	3.2	21	74	25	69	32	1	0	66	1.00
54511496--54511618	58	2.1	57	82	7	140	34	2	0	62	1.14
54512149--54512185	19	1.9	19	88	0	56	62	0	5	32	1.18
54513463--54513492	15	2.0	15	100	0	60	20	20	26	33	1.97
54513511--54513670	43	3.7	43	89	0	239	23	31	20	25	1.98
54513642--54513702	29	2.1	28	93	3	104	21	31	26	21	1.98
54513601--54513742	72	2.0	72	88	0	212	23	29	21	25	1.99
54513671--54513765	43	2.2	43	90	0	154	23	31	18	26	1.98
54513556--54513765	115	1.8	115	88	0	321	22	31	20	25	1.98
54514438--54514494	17	3.4	17	76	13	64	31	1	17	49	1.57
54514438--54514521	38	2.3	36	86	8	109	33	1	16	48	1.54
54514446--54514618	46	3.6	46	72	13	159	33	1	17	47	1.56
54514438--54514494	8	6.8	8	77	15	53	31	1	17	49	1.57
54514438--54514523	17	4.8	17	72	18	59	33	1	16	48	1.53
54514462--54514618	53	2.9	54	72	14	128	34	0	17	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54515241--54515287	21	2.2	21	84	0	58	46	0	12	40	1.42
54517104--54517989	199	4.5	199	88	2	1275	27	24	17	30	1.97
54518106--54518201	46	2.1	47	86	2	131	42	2	10	44	1.50
54518216--54518264	9	5.4	9	88	9	73	30	8	0	61	1.25
54518214--54518269	17	3.2	18	87	10	80	33	7	0	58	1.25
54518226--54518269	8	5.2	8	86	13	54	34	9	0	56	1.31
54518258--54518312	21	2.7	20	71	23	51	41	7	1	49	1.41
54518361--54518581	83	2.6	83	89	5	309	44	24	1	28	1.64
54518599--54518632	7	4.9	7	85	0	50	29	50	0	20	1.49
54518501--54518722	103	2.2	103	80	4	243	42	27	1	27	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228