genome.fa.s23.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  221  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65096972--65097018	25	2.0	25	84	16	64	25	2	12	59	1.45
65097722--65097760	16	2.4	16	83	8	53	5	7	41	46	1.55
65101319--65101360	11	3.9	11	79	17	52	26	0	2	71	0.98
65102371--65102409	15	2.6	15	84	8	53	66	2	2	28	1.18
65104428--65104481	26	2.1	26	100	0	108	22	37	11	29	1.89
65111538--65111563	8	3.2	8	100	0	52	34	11	11	42	1.77
65114029--65114061	12	2.8	12	90	0	57	66	0	3	30	1.06
65115716--65116048	143	2.3	143	87	1	488	28	22	18	30	1.97
65115528--65115879	188	1.9	188	86	3	503	28	22	17	30	1.97
65117029--65117061	14	2.3	15	89	5	50	24	33	15	27	1.95
65117943--65118002	30	2.0	30	100	0	120	56	3	6	33	1.42
65122049--65122091	12	3.6	12	80	0	50	65	18	0	16	1.28
65122054--65122094	15	2.7	15	84	0	55	65	19	0	14	1.26
65124442--65124472	11	2.8	11	95	0	53	41	9	25	22	1.84
65126979--65127011	17	1.9	17	100	0	66	42	9	0	48	1.35
65136153--65136210	8	7.6	8	72	18	52	67	0	1	31	1.01
65136163--65136214	3	18.7	3	74	21	51	69	0	0	30	0.89
65136160--65136207	5	10.2	5	77	18	50	66	0	0	33	0.92
65138776--65138828	23	2.3	23	90	0	88	22	20	24	32	1.98
65141683--65141770	45	2.0	45	90	0	140	21	22	5	50	1.70
65145231--65145270	14	2.9	14	88	0	62	32	5	17	45	1.70
65145239--65145305	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65145254--65145293	20	2.0	20	85	0	53	27	12	12	47	1.77
65146835--65146860	13	2.0	13	100	0	52	46	15	15	23	1.83
65147368--65147408	17	2.5	17	80	7	50	36	0	0	63	0.95
65148861--65148920	9	6.6	9	72	11	50	68	10	6	15	1.38
65148861--65148920	27	2.2	28	85	8	79	68	10	6	15	1.38
65148962--65149007	21	2.2	21	84	7	58	54	0	2	43	1.12
65149058--65149088	13	2.5	13	94	5	55	54	3	0	41	1.16
65159799--65159869	18	3.8	18	77	19	65	28	4	2	64	1.26
65159806--65159869	28	2.3	28	81	7	76	26	4	3	65	1.27
65164247--65164305	21	3.0	21	75	12	61	55	0	0	44	0.99
65164268--65164328	25	2.4	26	81	8	72	57	1	0	40	1.08
65168137--65168166	15	1.9	16	93	6	53	63	0	0	36	0.95
65168797--65168830	15	2.4	14	90	5	50	70	0	0	29	0.87
65175290--65175351	30	2.1	30	84	0	79	46	9	4	38	1.58
65180915--65180968	24	2.2	24	83	0	63	22	24	46	7	1.77
65181031--65181084	23	2.3	23	81	6	65	12	9	25	51	1.70
65184696--65184754	29	2.0	29	90	0	91	25	6	10	57	1.56
65187606--65187676	29	2.4	30	76	6	74	45	5	5	43	1.51
65188206--65188231	11	2.4	11	100	0	52	26	0	0	73	0.84
65195499--65195547	24	2.0	24	84	0	62	65	2	10	22	1.34
65195611--65195677	34	1.9	36	90	6	111	31	11	5	50	1.63
65201779--65201808	14	2.1	14	93	0	51	40	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65201968--65202012	19	2.5	19	82	7	58	53	0	0	46	1.00
65201984--65202015	14	2.2	15	94	5	57	53	0	0	46	1.00
65203289--65203313	8	3.1	8	100	0	50	0	0	76	24	0.80
65203410--65203468	30	2.0	30	86	0	82	27	13	11	47	1.78
65203726--65203794	8	8.5	8	75	16	54	68	0	0	31	0.90
65203731--65203794	17	3.9	17	78	8	62	70	0	0	29	0.88
65207259--65207296	19	1.9	19	89	5	58	44	0	0	55	0.99
65215673--65215710	19	2.0	20	89	5	60	55	2	2	39	1.28
65220273--65220304	12	2.6	13	85	14	50	34	0	25	40	1.56
65220741--65220765	3	8.3	3	100	0	50	36	0	0	64	0.94
65220807--65220840	11	3.2	11	83	8	52	76	0	2	20	0.92
65221127--65221189	25	2.6	25	87	7	85	15	22	20	41	1.90
65222201--65222254	27	2.0	27	100	0	108	25	22	33	18	1.97
65222334--65222400	19	3.6	19	81	4	82	35	8	0	55	1.32
65222600--65222656	19	3.1	19	79	5	80	38	12	0	49	1.41
65222668--65222708	19	2.1	19	86	4	55	53	0	9	36	1.34
65222902--65222939	18	2.1	18	90	9	60	55	0	5	39	1.23
65222902--65222940	19	2.1	18	90	4	60	56	0	5	38	1.22
65223014--65223084	27	2.6	27	88	0	106	19	26	22	30	1.98
65223391--65223451	32	2.0	32	83	6	81	39	4	4	50	1.45
65227524--65227555	6	5.3	6	92	0	55	50	34	15	0	1.45
65236240--65236306	33	2.0	33	100	0	134	40	2	14	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65239791--65239855	32	2.1	32	85	2	87	33	20	16	29	1.95
65243194--65243234	21	2.0	21	90	0	64	34	21	24	19	1.97
65251286--65251497	104	2.0	104	94	1	372	31	30	19	18	1.96
65254037--65254075	18	2.3	17	86	8	53	20	7	2	69	1.26
65255882--65255908	3	9.0	3	100	0	54	66	0	0	33	0.92
65258266--65258313	21	2.1	22	88	11	71	58	2	0	39	1.10
65260313--65260360	21	2.3	21	85	7	62	31	4	4	60	1.35
65266541--65266597	5	11.4	5	84	0	78	35	1	1	61	1.17
65266782--65266828	22	2.1	22	85	14	62	68	8	23	0	1.17
65267863--65267931	23	3.0	24	89	10	110	20	21	21	36	1.95
65283448--65283499	20	2.7	19	82	11	61	61	3	0	34	1.14
65283462--65283509	21	2.4	19	80	13	51	66	2	0	31	1.03
65284325--65284354	3	10.0	3	100	0	60	66	0	0	33	0.92
65285325--65285365	20	2.0	20	86	9	57	51	9	2	36	1.48
65291430--65291459	15	2.0	15	100	0	60	33	13	20	33	1.91
65293572--65293638	33	2.0	33	88	0	98	28	11	11	47	1.76
65294191--65294379	97	2.0	96	95	1	342	11	24	18	46	1.81
65304925--65304970	22	2.0	24	83	8	60	41	2	6	50	1.40
65305657--65305708	18	3.0	17	76	18	54	50	5	9	34	1.59
65312181--65312214	16	2.1	16	88	0	50	58	2	0	38	1.13
65317748--65317868	60	2.0	60	98	0	233	32	15	20	31	1.94
65322019--65322059	22	1.9	22	85	5	57	34	9	9	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65324107--65324166	18	3.2	18	77	13	50	53	3	1	41	1.27
65324806--65324841	19	1.9	19	88	5	56	50	5	5	38	1.49
65326988--65327128	73	1.9	73	83	8	180	43	19	18	18	1.89
65328114--65328149	9	3.9	9	92	3	54	75	8	2	13	1.15
65328390--65328475	26	3.3	27	64	15	72	54	9	17	18	1.69
65334115--65334170	19	2.9	18	82	17	60	35	0	0	64	0.94
65334122--65334174	20	2.8	20	80	13	58	33	0	1	64	1.05
65339913--65339937	3	8.3	3	100	0	50	32	32	0	36	1.58
65339978--65340013	4	9.0	4	100	0	72	25	0	25	50	1.50
65341901--65341939	19	2.1	19	100	0	78	15	38	15	30	1.88
65345177--65345302	61	2.1	61	100	0	252	35	23	9	31	1.87
65348323--65348367	18	2.7	17	77	22	51	53	0	0	46	1.00
65348371--65348570	93	2.2	93	92	2	341	43	3	6	47	1.43
65348463--65348951	122	4.0	122	91	0	739	46	3	6	43	1.45
65348274--65348701	214	2.0	215	92	1	707	45	3	6	45	1.44
65348674--65348730	29	2.0	29	90	6	91	52	0	1	45	1.11
65348710--65348914	58	3.4	58	66	20	152	47	4	5	41	1.49
65348463--65348951	243	2.0	244	89	1	739	46	3	6	43	1.45
65350354--65350414	21	3.0	21	82	2	79	34	26	22	16	1.95
65350419--65350463	23	2.0	23	86	0	63	40	15	15	28	1.88
65351555--65351588	3	11.3	3	100	0	68	64	0	0	35	0.94
65351879--65351916	18	2.0	19	90	10	60	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65351879--65351925	19	2.5	20	80	16	55	44	4	2	48	1.34
65352402--65352448	22	2.1	22	85	14	62	72	0	0	27	0.85
65353336--65353395	30	2.0	30	93	0	102	33	10	8	48	1.67
65388837--65389014	51	3.5	51	93	1	304	33	14	23	28	1.94
65393295--65393327	12	2.9	12	86	13	52	0	36	6	57	1.23
65394927--65395074	10	15.3	10	67	16	64	36	3	2	58	1.26
65394927--65394979	19	2.7	20	82	2	63	32	3	1	62	1.24
65394927--65395095	9	17.4	9	68	17	90	34	3	2	59	1.28
65406750--65406790	21	2.0	21	90	0	64	29	21	29	19	1.98
65412923--65413003	20	3.7	20	71	24	56	38	1	0	60	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228