genome.fa.s23.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  176  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52660938--52661183	132	1.9	133	93	2	424	26	19	23	30	1.98
52661492--52662637	46	24.8	46	89	1	1601	32	24	15	27	1.95
52663508--52663826	97	3.1	106	79	11	356	50	8	14	27	1.70
52664091--52664146	5	11.8	5	77	11	64	0	17	0	82	0.68
52664089--52664162	20	3.6	20	77	15	80	0	18	1	79	0.80
52664090--52664167	28	2.6	29	84	13	97	0	16	1	82	0.75
52668922--52668956	10	3.5	10	92	0	61	65	0	0	34	0.93
52668902--52668975	22	3.5	21	81	7	69	58	4	4	33	1.36
52668902--52668952	12	4.4	12	80	9	52	54	0	5	39	1.24
52668920--52668970	20	2.5	20	87	3	66	62	5	0	31	1.19
52674214--52674494	41	6.9	41	75	6	264	17	23	24	34	1.95
52674213--52674516	82	3.7	82	85	1	369	16	23	23	36	1.94
52674303--52674533	123	1.9	123	80	3	268	16	24	24	34	1.95
52675054--52675091	15	2.5	15	86	0	58	21	0	42	36	1.53
52675890--52675931	21	2.0	21	95	0	75	45	0	7	47	1.30
52676237--52676276	17	2.3	18	87	8	57	47	12	5	35	1.63
52676835--52676892	20	2.8	19	78	16	55	31	1	3	63	1.21
52676810--52676919	22	5.2	21	73	15	84	31	2	1	63	1.19
52676810--52676931	62	1.9	63	82	15	155	31	2	2	63	1.21
52676990--52677060	30	2.4	30	85	4	90	23	11	28	36	1.89
52685537--52686526	497	2.0	498	97	0	1892	30	25	12	31	1.93
52690073--52690115	18	2.4	18	80	7	52	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52691016--52691249	96	2.5	95	80	7	253	29	12	8	49	1.70
52692241--52692354	61	2.0	59	89	10	182	38	6	12	42	1.67
52710774--52710812	14	2.8	14	84	0	51	33	5	0	61	1.18
52717972--52718172	41	4.9	40	79	7	208	35	26	19	18	1.95
52725826--52725867	16	2.8	16	89	7	61	54	0	4	40	1.21
52728586--52728629	21	2.1	21	86	0	61	29	18	22	29	1.97
52731055--52731079	13	1.9	13	100	0	50	36	0	0	64	0.94
52731173--52731207	12	3.0	11	91	8	52	77	0	22	0	0.78
52731473--52731510	20	2.0	20	89	5	60	39	0	18	42	1.50
52732368--52732422	23	2.4	23	93	0	92	23	20	20	36	1.95
52732404--52732453	21	2.3	22	79	6	57	16	24	26	34	1.95
52732412--52732464	21	2.5	21	75	0	61	20	26	22	30	1.98
52732717--52732762	24	1.9	24	86	0	65	43	2	19	34	1.63
52733455--52733498	18	2.4	18	81	7	54	40	0	4	54	1.21
52746817--52746907	44	2.1	44	89	4	139	46	10	13	29	1.77
52748800--52748885	44	2.0	44	95	0	154	47	10	12	29	1.75
52753687--52753812	63	2.0	63	100	0	252	23	12	20	42	1.86
52766075--52766144	36	1.9	36	94	0	122	27	10	28	34	1.89
52766564--52766611	23	2.1	23	88	7	71	37	4	12	45	1.61
52772222--52772371	27	5.5	27	80	6	144	28	28	16	26	1.97
52780230--52780379	27	5.5	27	80	6	144	28	28	16	26	1.97
52782381--52782420	22	1.9	20	85	10	53	30	5	30	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52788144--52788310	27	6.5	27	77	10	170	16	17	23	42	1.88
52788244--52788281	19	2.0	19	89	0	58	15	5	26	52	1.64
52788217--52788308	46	2.0	46	89	0	139	16	13	25	45	1.83
52790560--52790628	34	2.0	34	100	0	138	40	17	2	39	1.64
52798515--52798571	28	2.0	28	96	0	105	26	28	26	19	1.99
52798956--52799135	54	3.3	54	85	3	245	14	17	24	43	1.87
52798970--52799135	27	6.1	27	84	1	217	13	18	23	44	1.85
52799817--52799849	15	2.2	15	94	0	57	63	0	33	3	1.10
52803815--52803892	13	5.8	13	71	15	52	0	19	10	70	1.15
52805379--52805434	28	2.0	28	100	0	112	32	14	10	42	1.80
52805384--52805443	28	2.1	28	84	0	75	35	18	8	38	1.81
52811259--52811306	24	1.9	25	87	8	71	31	22	12	33	1.91
52812213--52812241	5	5.8	5	100	0	58	0	82	0	17	0.66
52814107--52814139	6	5.5	6	92	0	57	27	0	21	51	1.48
52816619--52816663	20	2.3	20	96	3	83	31	35	17	15	1.92
52820385--52820432	22	2.3	22	82	10	57	37	4	4	54	1.39
52820543--52820589	18	2.5	20	72	10	53	36	0	6	57	1.24
52824098--52824255	79	2.0	79	92	0	262	28	13	17	39	1.88
52824725--52824811	25	3.5	24	82	6	111	12	24	13	49	1.77
52824776--52824818	20	2.2	20	86	0	59	11	25	11	51	1.72
52824775--52824833	30	2.0	30	82	0	73	10	27	11	50	1.71
52825793--52825831	17	2.4	16	87	8	60	35	0	5	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52826097--52826129	15	2.2	15	89	10	50	30	0	3	66	1.06
52826915--52826982	32	2.1	33	86	8	95	36	14	5	42	1.70
52827082--52827106	6	4.2	6	100	0	50	0	68	0	32	0.90
52833415--52833460	22	2.0	23	84	12	60	4	8	28	58	1.47
52833732--52833765	13	2.7	13	90	4	52	2	14	5	76	1.09
52834809--52834941	27	4.9	27	82	0	149	42	18	18	20	1.89
52834803--52834952	54	2.8	54	80	4	167	40	19	18	22	1.91
52835116--52835217	26	3.9	26	77	0	105	15	18	25	40	1.90
52835345--52835446	30	3.5	28	79	10	105	21	25	24	28	1.99
52835352--52835441	30	3.0	30	83	0	117	21	26	23	28	1.99
52837865--52837980	43	2.7	42	83	10	153	26	28	19	25	1.99
52838872--52838928	28	2.0	28	86	6	80	40	5	0	54	1.23
52842213--52842316	21	5.0	21	80	9	115	13	22	19	45	1.85
52842213--52842316	40	2.5	41	81	9	115	13	22	19	45	1.85
52842453--52842500	21	2.3	20	82	3	60	45	4	25	25	1.71
52857097--52857156	30	2.0	30	90	0	93	58	13	3	25	1.50
52859186--52859464	27	10.3	27	80	7	280	17	17	19	45	1.86
52859187--52859464	81	3.4	81	87	3	364	16	17	19	45	1.85
52865890--52865929	22	1.9	20	85	10	53	45	7	5	42	1.54
52866565--52866621	28	2.0	28	89	0	87	26	24	24	24	2.00
52866954--52867460	27	19.0	27	80	7	455	17	17	20	44	1.87
52866981--52867448	155	3.0	155	82	7	480	16	17	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52878748--52878831	24	3.5	24	67	6	71	10	8	52	28	1.65
52878893--52878963	36	2.0	36	85	0	97	19	5	54	19	1.63
52878902--52878994	36	2.6	36	85	0	114	16	6	53	23	1.65
52879034--52879091	30	1.9	30	82	6	73	12	10	55	22	1.66
52878960--52879257	114	2.6	114	96	0	551	18	6	53	21	1.67
52879166--52879282	12	9.8	12	70	3	56	10	9	57	23	1.61
52879172--52879281	24	4.6	24	73	4	87	10	10	57	21	1.62
52879202--52879302	24	4.2	24	71	0	67	15	4	55	23	1.60
52879340--52879455	48	2.4	48	86	0	160	16	5	56	22	1.60
52879139--52879395	78	3.4	77	89	6	389	15	6	56	21	1.62
52879450--52879504	15	3.7	15	73	9	58	9	7	58	25	1.55
52879439--52879509	30	2.4	30	76	4	72	9	5	57	26	1.53
52880017--52880056	20	2.1	18	86	9	53	50	5	0	45	1.23
52882899--52882939	13	3.1	13	82	6	55	34	0	2	63	1.08
52885139--52885197	24	2.4	24	78	13	66	59	5	1	33	1.29
52886020--52886097	23	3.3	23	69	29	58	56	3	6	33	1.43
52887287--52887325	18	2.2	18	85	0	51	12	2	7	76	1.09
52887802--52888039	44	5.4	44	75	6	126	28	25	20	26	1.99
52887755--52888082	132	2.5	133	81	2	354	28	24	20	27	1.99
52890157--52890258	41	2.5	40	79	6	114	17	22	30	29	1.97
52890752--52890792	15	2.7	15	92	3	64	46	0	0	53	1.00
52892612--52892692	42	1.9	43	84	2	110	29	29	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52893844--52893884	9	4.3	10	81	12	50	7	9	0	82	0.83
52893869--52893922	27	2.0	27	92	3	92	22	1	5	70	1.18
52893878--52893932	27	2.1	27	89	3	85	21	0	10	67	1.21
52899066--52899161	23	4.1	23	70	21	67	57	3	5	34	1.37
52900558--52900589	8	4.2	8	84	15	50	53	9	0	37	1.34
52901476--52901544	7	9.4	7	75	12	50	62	1	2	33	1.19
52902657--52902709	27	1.9	28	88	3	81	49	1	0	49	1.12
52905873--52905929	28	2.0	28	100	0	114	52	21	10	15	1.72
52906170--52906229	24	2.5	24	81	10	70	53	6	5	35	1.49
52906331--52906381	3	17.0	3	100	0	102	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228