genome.fa.s23.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  107  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31202121--31202167	21	2.1	21	88	7	67	38	17	34	10	1.84
31203282--31203331	26	1.9	26	100	0	100	44	14	6	36	1.69
31203434--31203476	6	7.2	6	100	0	86	32	0	16	51	1.45
31205824--31205877	26	2.1	26	86	3	74	31	0	3	64	1.11
31209384--31209670	144	2.0	144	82	5	357	39	4	10	44	1.61
31209416--31209694	143	2.0	143	80	5	323	40	5	10	43	1.62
31209785--31209823	6	6.5	6	93	0	60	61	0	38	0	0.96
31210600--31210665	27	2.5	26	87	2	69	34	9	13	42	1.76
31210609--31210665	27	2.1	27	93	0	96	36	10	10	42	1.74
31212905--31212948	11	3.9	11	90	3	70	22	31	0	45	1.53
31212905--31212948	22	2.0	23	95	4	81	22	31	0	45	1.53
31213573--31213618	24	2.0	23	91	4	74	8	6	13	71	1.29
31214670--31214719	9	5.6	9	87	0	73	46	20	8	26	1.78
31214670--31214727	9	6.4	9	87	0	53	43	20	8	27	1.81
31214670--31214727	18	3.2	19	83	9	77	43	20	8	27	1.81
31214735--31214797	17	3.5	17	69	12	54	49	12	3	34	1.57
31214726--31214800	37	2.0	37	94	0	132	45	14	4	36	1.64
31214930--31215044	39	3.0	38	94	3	203	18	2	28	50	1.60
31215025--31215049	13	1.9	13	100	0	50	12	0	48	40	1.40
31224102--31224138	18	2.1	18	89	0	56	24	24	8	43	1.81
31224615--31224655	18	2.3	18	91	0	64	46	17	7	29	1.74
31224671--31224733	17	3.5	17	69	12	54	49	14	3	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31224921--31224958	17	2.2	18	95	4	69	15	0	42	42	1.47
31225270--31225388	62	2.0	59	83	8	150	40	4	8	47	1.53
31227282--31227411	64	2.0	64	98	0	251	33	19	13	33	1.91
31228404--31228431	13	2.2	13	100	0	56	14	17	7	60	1.55
31228487--31228847	125	2.9	126	84	2	386	29	17	14	38	1.90
31228973--31229051	33	2.4	33	83	12	108	43	18	1	36	1.59
31229024--31229106	27	3.0	27	83	13	98	34	15	4	44	1.68
31236966--31236998	2	16.5	2	100	0	66	51	0	48	0	1.00
31237678--31237771	48	2.0	48	100	0	188	38	13	20	27	1.90
31239295--31239932	318	2.0	319	94	0	1127	34	14	13	36	1.86
31247337--31247390	17	3.2	17	89	0	81	35	7	20	37	1.81
31247375--31247421	23	2.0	23	87	4	67	34	6	17	42	1.74
31248813--31248849	9	4.1	9	100	0	74	32	10	24	32	1.90
31251600--31251674	30	2.5	30	80	2	89	26	24	10	38	1.88
31251660--31251852	30	6.5	30	72	9	103	22	28	11	37	1.90
31251777--31251850	29	2.5	29	86	8	105	17	31	12	39	1.86
31251598--31251878	119	2.4	119	86	4	372	23	27	12	37	1.90
31254319--31254388	27	2.7	27	82	4	72	28	22	24	24	1.99
31258934--31258990	18	3.2	18	89	0	78	12	36	33	17	1.87
31261639--31261671	14	2.5	13	90	9	57	36	0	30	33	1.58
31265116--31265162	24	2.0	23	88	12	69	31	4	17	46	1.67
31265116--31265162	23	2.0	24	88	12	71	31	4	17	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31266043--31266108	34	1.9	34	90	0	105	62	6	1	30	1.29
31270338--31270385	25	1.9	25	82	0	60	47	2	6	43	1.40
31271339--31271841	248	2.0	248	98	0	961	32	14	16	37	1.88
31274322--31274366	18	2.6	18	86	10	58	42	6	15	35	1.73
31282265--31282290	6	4.3	6	100	0	52	50	19	15	15	1.79
31283172--31283404	27	8.6	27	88	0	304	33	23	18	24	1.96
31283172--31283404	81	2.9	81	86	0	340	33	23	18	24	1.96
31286899--31286939	11	3.8	11	83	3	57	58	0	0	41	0.98
31286943--31286967	12	2.1	12	100	0	50	60	8	0	32	1.26
31286964--31287013	16	2.9	17	80	19	68	38	0	4	58	1.17
31286964--31287021	15	3.6	16	84	11	66	37	0	3	58	1.15
31286980--31287031	15	3.4	15	91	2	77	40	0	3	55	1.18
31292599--31292642	3	15.0	3	95	4	81	68	0	0	31	0.90
31292601--31292640	20	2.0	20	100	0	80	70	0	0	30	0.88
31292599--31292642	23	1.9	23	100	0	88	68	0	0	31	0.90
31299851--31299915	31	2.1	31	91	0	103	43	9	12	35	1.74
31304225--31304289	28	2.2	30	83	8	80	20	21	15	43	1.88
31304689--31304883	98	2.0	98	95	0	354	37	24	10	28	1.88
31305159--31305191	15	2.2	15	94	0	57	63	12	0	24	1.28
31305623--31305660	19	2.0	19	100	0	76	42	5	10	42	1.62
31305626--31305666	19	2.3	18	87	8	57	48	4	14	31	1.65
31307062--31307142	33	2.5	33	80	10	94	14	20	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31309146--31309338	50	3.7	50	79	4	197	23	26	21	28	1.99
31309146--31309343	100	1.9	105	81	6	244	23	26	20	29	1.99
31315229--31315291	31	2.1	28	83	13	74	34	11	4	49	1.59
31319305--31319380	37	2.1	36	83	11	93	40	2	2	53	1.28
31320659--31320898	90	2.6	90	81	5	250	32	19	15	32	1.93
31324175--31324222	22	2.1	23	85	11	64	62	14	6	16	1.51
31324578--31324640	28	2.2	27	83	10	81	42	20	20	15	1.89
31328663--31328782	24	5.0	24	85	0	150	44	26	14	15	1.84
31339197--31339269	36	2.0	36	100	0	146	38	16	10	34	1.84
31350240--31350765	260	2.0	261	94	1	921	34	18	9	38	1.82
31352648--31352690	21	2.0	21	86	0	59	51	2	13	32	1.54
31355984--31356074	40	2.2	42	84	7	114	50	7	5	36	1.54
31373617--31373803	62	3.0	62	80	1	196	24	26	24	25	2.00
31373656--31373823	62	2.7	62	80	3	178	24	27	25	22	1.99
31375313--31375348	16	2.2	16	90	0	54	16	13	22	47	1.82
31375585--31375618	17	2.1	17	94	5	61	38	0	0	61	0.96
31376075--31376112	19	2.0	20	84	5	51	63	5	0	31	1.17
31379475--31379570	50	2.0	50	83	4	124	27	25	27	20	1.99
31385697--31385773	23	3.3	23	88	1	118	22	20	24	32	1.98
31389639--31389863	42	5.3	41	78	12	199	34	27	16	20	1.95
31389641--31389866	85	2.7	85	85	4	289	34	28	16	21	1.95
31397228--31397382	43	3.6	42	78	10	181	38	25	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31397200--31397423	43	5.3	40	75	11	180	37	25	16	20	1.93
31397200--31397427	85	2.7	85	86	2	307	36	26	16	21	1.94
31401594--31401708	50	2.3	50	80	5	126	25	21	31	21	1.98
31402905--31402981	37	2.1	37	100	0	154	36	10	12	40	1.78
31416190--31416223	16	2.1	16	88	0	50	67	2	20	8	1.31
31419301--31419752	200	2.2	201	92	1	728	33	21	13	32	1.92
31422265--31422356	28	2.9	33	71	15	95	28	20	23	27	1.99
31422453--31422533	26	3.1	26	87	0	117	37	24	18	19	1.94
31422697--31423217	27	19.4	27	78	6	436	19	16	20	42	1.89
31423466--31423507	20	2.2	19	86	4	57	16	42	21	19	1.89
31430499--31430604	41	2.6	41	95	0	185	21	21	25	31	1.98
31438211--31438518	92	3.3	92	79	4	327	28	15	20	35	1.94
31442152--31442186	16	2.2	16	89	0	52	45	20	20	14	1.85
31442517--31442631	27	4.3	27	83	2	115	42	19	14	23	1.88
31446456--31446807	179	2.0	180	93	4	611	36	11	16	34	1.86
31460870--31461064	50	3.9	50	78	6	223	30	29	15	23	1.96
31460872--31461055	101	1.8	101	88	2	280	30	28	16	23	1.97
31463822--31463903	42	2.0	42	85	4	112	32	23	13	30	1.93
31466569--31466752	51	3.6	51	78	5	203	30	29	16	23	1.96
31466562--31466748	101	1.8	101	88	3	286	31	28	16	23	1.96
31474719--31474896	27	6.6	27	82	3	196	26	14	28	30	1.95
31474716--31474896	82	2.2	81	82	2	220	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31482314--31482339	12	2.2	12	100	0	52	50	7	0	42	1.31
31482819--31482996	27	6.6	27	83	3	205	26	15	28	29	1.96
31482820--31482975	82	1.9	81	88	3	233	26	15	28	29	1.96
31482816--31482996	82	2.2	81	83	2	229	27	15	27	29	1.96
31482901--31483007	27	3.9	27	85	1	70	26	14	28	30	1.95
31486070--31486148	38	2.1	37	86	6	106	26	30	17	25	1.97
31486267--31486654	47	8.2	47	92	1	623	28	30	9	32	1.88
31486269--31486654	189	2.0	189	90	2	621	28	30	9	32	1.88
31489996--31490111	40	2.9	40	85	0	133	26	30	19	23	1.98
31490483--31490561	29	2.7	29	86	5	106	27	32	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228