Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  111  of  228  ( 27298 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32355074--32355170
34
2.9
33
77
11
108
54
2
1
42
1.19
32355175--32355224
11
4.6
11
73
11
50
44
0
2
54
1.11
32355809--32355852
13
3.3
13
78
15
54
50
15
15
18
1.79
32360281--32360319
16
2.4
16
82
0
51
33
25
5
35
1.78
32369541--32369729
51
3.7
50
79
12
224
26
17
24
30
1.97
32369957--32369988
16
2.0
16
93
0
55
59
0
15
25
1.36
32371021--32371083
31
2.0
31
96
0
117
47
11
9
31
1.71
32376309--32376343
18
1.9
18
88
0
52
17
17
0
65
1.27
32378951--32379017
31
2.3
27
74
18
64
38
14
11
34
1.84
32379939--32379989
23
2.2
23
96
0
93
41
0
7
50
1.31
32380418--32380478
27
2.4
26
84
12
74
37
4
14
42
1.68
32380793--32380824
15
2.1
15
94
0
55
50
15
12
21
1.77
32381646--32381732
44
2.0
44
93
0
147
50
5
20
22
1.69
32382405--32382454
13
3.7
13
76
10
55
60
2
0
38
1.09
32384197--32384371
85
2.1
85
92
0
287
32
10
13
42
1.79
32385293--32385359
34
1.9
35
87
3
100
44
14
8
31
1.76
32393473--32393793
163
2.0
163
96
0
588
27
12
24
34
1.92
32395761--32395804
21
2.1
21
91
8
72
34
20
9
36
1.84
32396357--32396447
38
2.4
38
96
0
164
32
16
16
34
1.91
32396830--32396867
18
2.1
18
90
0
58
26
7
7
57
1.54
32402250--32402275
12
2.2
12
100
0
52
7
0
38
53
1.30
32407695--32407737
20
2.2
20
91
0
68
44
0
30
25
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32409086--32409121
19
1.9
18
88
5
54
47
5
19
27
1.72
32424245--32424275
14
2.2
14
94
0
53
19
32
16
32
1.94
32426290--32426397
43
2.5
43
89
1
162
25
15
25
32
1.96
32428626--32428709
25
3.4
25
83
0
105
25
23
22
28
1.99
32434620--32434654
17
2.1
17
88
0
52
57
8
2
31
1.44
32449281--32449323
13
3.4
12
83
6
50
86
4
9
0
0.71
32449281--32449314
17
2.1
16
88
5
50
88
2
8
0
0.62
32453864--32453897
15
2.3
15
89
0
50
58
8
14
17
1.61
32454901--32454925
11
2.3
11
100
0
50
92
8
0
0
0.40
32455999--32456666
307
2.2
306
85
3
903
30
26
16
27
1.96
32456090--32456734
219
2.9
218
88
2
918
30
26
16
26
1.97
32456021--32456734
132
5.4
131
83
6
741
30
26
16
26
1.97
32455996--32456734
88
8.4
87
82
3
632
30
26
16
27
1.97
32456742--32457081
134
2.5
134
90
0
509
29
22
20
27
1.99
32456742--32457541
365
2.2
360
82
5
914
29
22
20
28
1.98
32457445--32458060
45
13.4
45
63
16
149
29
22
19
28
1.98
32457443--32457636
95
2.0
95
96
0
361
28
22
19
29
1.98
32456847--32458228
229
6.0
229
98
0
2557
29
22
20
28
1.98
32457672--32457865
95
2.0
95
95
0
352
28
21
19
29
1.98
32457901--32458094
95
2.0
95
96
0
361
28
22
19
29
1.98
32457996--32458496
134
3.7
134
96
0
930
29
22
20
27
1.98
32458101--32459157
46
23.4
46
61
13
253
29
22
20
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32457767--32459265
497
3.0
497
99
0
2980
29
22
20
28
1.98
32458400--32458557
45
3.4
45
67
17
133
28
24
18
28
1.98
32458398--32458591
95
2.0
95
96
0
361
28
22
19
29
1.98
32458493--32458993
134
3.7
134
97
0
939
29
22
20
28
1.98
32458264--32458725
229
2.0
229
99
0
915
29
22
19
28
1.98
32458895--32459088
95
2.0
95
96
0
361
28
22
19
29
1.98
32458990--32459265
134
2.1
134
96
0
507
29
22
19
28
1.98
32458761--32459222
229
2.0
229
99
0
915
29
22
19
28
1.98
32460260--32460322
6
10.2
6
77
19
51
3
17
1
77
0.97
32460261--32460310
7
7.4
7
76
14
52
4
16
0
80
0.87
32460748--32460800
12
4.7
11
83
9
54
1
13
5
79
0.99
32460732--32460801
23
3.2
22
76
20
67
2
11
5
80
1.00
32462017--32462141
62
2.0
62
90
0
196
28
8
24
38
1.85
32464050--32464083
15
2.3
15
89
0
50
58
8
14
17
1.61
32465087--32465111
11
2.3
11
100
0
50
92
8
0
0
0.40
32467187--32467223
19
2.0
18
89
5
56
67
0
0
32
0.91
32469942--32470028
37
2.3
38
84
5
106
32
42
10
14
1.80
32472206--32472252
14
3.4
14
75
0
58
34
36
12
17
1.87
32475735--32476256
44
11.7
44
67
14
178
26
21
21
30
1.98
32478668--32478696
6
4.8
6
100
0
58
0
17
0
82
0.66
32486144--32486234
27
3.4
27
82
0
128
36
24
19
19
1.95
32496855--32496896
13
3.2
13
80
10
50
16
16
16
50
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32502742--32502785
22
2.0
22
100
0
88
31
9
9
50
1.65
32503210--32503299
30
2.9
30
73
10
85
40
15
2
42
1.59
32503992--32504128
61
2.2
61
90
0
220
40
3
18
37
1.68
32505036--32505090
28
2.0
29
83
16
73
69
1
3
25
1.15
32505061--32505093
17
1.9
17
93
0
57
69
3
3
24
1.16
32505408--32505467
19
3.0
20
78
11
61
28
1
1
68
1.09
32505588--32505644
17
3.3
17
80
11
71
19
3
1
75
1.04
32505545--32505618
24
3.1
24
73
11
62
22
4
2
70
1.17
32515986--32516016
15
2.1
15
93
0
53
64
0
0
35
0.94
32521383--32521529
73
2.0
73
98
0
285
31
21
15
31
1.95
32523494--32523619
9
14.1
9
91
1
191
23
9
23
42
1.83
32528541--32528629
37
2.4
37
88
0
142
43
13
7
34
1.73
32528672--32528747
33
2.3
33
97
0
143
43
15
5
35
1.70
32532286--32532317
16
1.9
17
93
6
57
37
21
0
40
1.54
32532478--32532634
43
3.7
42
82
8
176
29
27
19
23
1.98
32532478--32532635
84
1.9
84
84
7
214
30
27
18
23
1.98
32535389--32535597
92
2.3
91
86
6
280
45
3
3
46
1.39
32535525--32535572
26
1.9
25
84
16
64
45
0
2
52
1.12
32535747--32535788
15
2.7
16
82
14
52
45
0
2
52
1.13
32535738--32535779
15
2.9
15
82
10
52
47
0
0
52
1.00
32535723--32535961
75
3.1
75
63
16
180
46
3
3
46
1.35
32535719--32535968
76
3.1
82
64
20
211
46
3
3
47
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32535891--32535925
18
2.0
17
88
5
52
45
0
0
54
0.99
32535722--32536038
157
2.0
157
96
0
580
47
5
3
44
1.42
32536161--32536194
16
2.1
16
94
0
59
38
32
0
29
1.58
32537089--32537163
28
2.7
28
93
4
125
42
10
0
46
1.38
32537220--32537295
27
2.8
27
84
4
91
26
27
27
18
1.98
32537369--32537407
11
3.7
10
93
6
60
69
2
28
0
1.02
32537434--32537472
19
2.0
21
85
10
55
23
0
10
66
1.22
32537536--32537576
3
13.7
3
100
0
82
0
0
31
68
0.90
32537757--32537809
26
2.0
26
89
7
81
43
1
5
49
1.37
32538385--32538429
18
2.5
18
81
0
63
28
8
48
13
1.72
32544080--32544117
19
2.0
19
85
10
51
60
7
0
31
1.25
32544177--32544278
4
24.5
4
74
18
68
0
30
0
68
0.96
32544124--32544230
44
2.3
48
82
10
134
0
31
0
67
0.97
32544181--32544275
31
2.8
34
81
15
124
1
30
0
68
0.97
32544178--32544244
11
5.8
12
75
12
50
0
26
0
73
0.84
32544160--32544278
39
3.1
38
78
11
145
0
31
0
67
0.97
32544227--32544285
31
1.9
31
82
6
75
3
33
0
62
1.12
32544323--32544398
27
2.8
27
83
0
98
15
27
28
27
1.96
32544454--32544525
27
2.7
27
91
6
112
44
0
11
44
1.39
32545587--32545630
19
2.3
19
88
4
61
22
4
2
70
1.17
32554452--32554605
62
2.5
63
87
5
206
18
21
31
27
1.97
32556094--32556131
19
2.0
19
94
0
67
44
5
0
50
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32559076--32559124
22
2.2
22
89
7
73
48
16
20
14
1.80
32566705--32566734
15
2.1
15
93
6
53
20
33
10
36
1.86
32571060--32571237
27
6.6
27
81
3
169
29
28
15
26
1.96
32579165--32579341
27
6.5
27
82
3
176
29
27
15
27
1.96
32582078--32582129
25
2.1
25
92
7
88
17
26
3
51
1.62
32587183--32587253
21
3.3
21
66
14
54
39
9
22
28
1.86
32587192--32587262
23
3.2
23
65
15
67
40
9
23
25
1.85
32597381--32597533
24
6.7
23
71
14
111
52
5
5
35
1.48
32597448--32597531
44
1.9
44
82
4
107
54
4
4
35
1.42
32597381--32597533
68
2.2
69
79
7
170
52
5
5
35
1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228