genome.fa.s23.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  163  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48931993--48932036	22	2.0	22	90	0	70	45	27	18	9	1.79
48932134--48932164	12	2.5	13	89	10	55	48	0	0	51	1.00
48935602--48935679	26	2.9	26	94	3	129	11	35	29	23	1.90
48939831--48939864	17	2.0	17	100	0	68	35	5	23	35	1.79
48944305--48944357	23	2.3	23	81	12	65	69	1	0	28	0.99
48944336--48944390	28	1.9	29	85	10	78	58	0	0	41	0.98
48951690--48951718	14	2.0	15	93	6	51	51	0	0	48	1.00
48951860--48951919	29	2.1	29	100	0	120	45	20	0	35	1.51
48961933--48961976	13	3.3	14	84	9	56	50	0	0	50	1.00
48961935--48961974	14	2.8	16	78	21	52	47	0	0	52	1.00
48961979--48962040	20	3.2	20	72	21	60	53	1	0	45	1.10
48974621--48974663	21	2.0	21	82	8	52	11	11	32	44	1.77
48975968--48976001	16	2.1	17	88	5	52	76	11	0	11	1.02
48977507--48977577	9	7.7	9	74	10	63	78	2	1	16	0.94
48977465--48977575	47	2.4	45	82	12	138	74	3	1	19	1.05
48977967--48978017	20	2.5	21	87	9	70	29	23	15	31	1.95
48978295--48978343	20	2.5	20	96	0	89	57	22	4	16	1.56
48980723--48980769	23	2.1	22	92	4	76	76	0	21	2	0.89
48984543--48984789	113	2.2	113	96	0	449	31	15	19	33	1.93
48984740--48984789	21	2.4	21	80	6	57	32	22	16	30	1.95
48991024--48991210	84	2.2	83	91	0	293	30	13	13	42	1.83
48996314--48996402	44	2.0	44	100	0	178	51	11	8	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49000712--49000765	18	3.1	17	81	7	63	35	18	1	44	1.61
49000836--49000870	2	17.5	2	100	0	70	51	48	0	0	1.00
49001989--49002042	18	3.1	17	81	7	72	44	0	20	35	1.52
49002656--49002783	66	1.9	66	84	6	170	34	16	23	25	1.95
49002662--49002786	33	3.8	33	68	5	92	32	16	24	25	1.96
49006334--49006408	39	1.9	39	88	0	114	28	4	20	48	1.67
49006343--49006428	39	2.2	39	83	4	102	27	4	20	46	1.71
49012214--49012308	50	1.9	50	85	8	131	31	24	14	29	1.95
49012244--49012398	76	2.0	76	84	0	202	30	19	14	36	1.91
49012351--49012407	25	2.3	26	81	9	73	35	17	12	35	1.87
49013721--49013752	16	2.0	16	93	0	55	18	21	15	43	1.87
49017860--49018059	85	2.4	85	88	0	294	33	25	17	24	1.96
49017899--49018058	43	3.7	43	73	9	148	34	26	16	22	1.95
49018073--49018122	25	2.0	26	84	11	68	26	34	22	18	1.96
49018459--49018516	30	1.9	30	85	0	80	29	24	8	37	1.85
49023846--49023890	11	4.1	11	77	11	56	51	0	0	48	1.00
49023846--49023888	6	7.7	6	80	15	56	51	0	0	48	1.00
49024064--49024111	23	2.1	23	88	0	69	20	35	27	16	1.94
49028008--49028153	68	2.1	68	83	7	181	27	20	14	37	1.91
49041187--49041240	28	1.9	28	96	0	99	31	25	25	16	1.97
49041182--49041247	28	2.4	27	85	7	96	31	24	24	19	1.98
49041457--49041615	64	2.5	64	83	2	176	36	22	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49041452--49041618	32	5.2	32	78	1	138	35	20	23	20	1.96
49042013--49042288	27	10.4	27	84	1	283	27	15	16	39	1.89
49045751--49045781	16	1.9	16	93	0	53	32	25	16	25	1.96
49046800--49046853	28	1.9	28	88	0	81	29	24	27	18	1.98
49046795--49046860	28	2.4	27	80	7	78	30	22	25	21	1.99
49047057--49047154	32	3.1	32	80	0	115	37	19	21	21	1.94
49047169--49047232	27	2.4	27	80	12	71	31	21	25	21	1.98
49047297--49047355	24	2.5	23	83	8	82	45	23	8	22	1.79
49047395--49047626	27	8.6	27	85	0	293	25	20	18	36	1.95
49048587--49048733	32	4.6	32	78	0	132	33	25	23	18	1.97
49048587--49048725	64	2.2	64	84	0	179	33	23	24	17	1.96
49048587--49048757	32	5.4	31	76	10	123	35	23	23	18	1.96
49049467--49049506	21	1.9	21	89	0	62	40	20	2	37	1.66
49061567--49061744	63	2.8	61	78	6	185	23	26	22	27	2.00
49074949--49074975	4	6.8	4	100	0	54	77	0	0	22	0.76
49079439--49079513	37	2.1	36	87	2	105	34	14	10	40	1.81
49100254--49100295	19	2.3	19	84	12	52	30	2	4	61	1.29
49102482--49102506	11	2.3	11	100	0	50	84	0	8	8	0.79
49104428--49104458	16	1.9	16	93	0	53	51	0	0	48	1.00
49106056--49106114	18	3.2	18	71	20	50	44	15	1	38	1.56
49107883--49107971	3	30.0	3	86	2	117	35	4	0	59	1.18
49110365--49110410	17	2.7	17	82	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49110733--49110771	14	2.7	14	84	4	51	35	0	0	64	0.94
49111677--49111748	18	3.7	18	71	20	54	25	41	4	29	1.74
49111683--49111735	24	2.4	22	75	18	56	18	49	3	28	1.65
49113498--49113568	36	1.9	37	94	2	126	54	26	4	14	1.57
49114968--49115000	16	2.1	16	100	0	66	36	6	33	24	1.80
49116281--49116339	11	5.2	11	82	13	75	35	1	1	61	1.16
49116284--49116345	3	21.3	3	76	12	58	33	3	1	61	1.22
49116284--49116329	14	3.4	14	79	8	51	34	2	2	60	1.21
49119374--49119424	22	2.3	23	83	12	63	60	3	25	9	1.45
49123864--49123938	26	3.1	24	81	12	73	21	16	2	60	1.48
49123885--49123938	24	2.3	23	81	12	65	24	14	0	61	1.34
49128630--49128965	89	3.8	89	76	3	257	28	21	25	25	1.99
49129272--49129540	124	2.1	126	91	2	434	29	21	21	27	1.98
49129330--49129516	42	4.5	42	66	18	97	29	20	23	25	1.99
49129275--49129539	40	6.3	42	67	18	128	28	21	21	27	1.99
49130779--49130843	22	2.9	22	84	9	69	27	3	6	63	1.33
49130795--49130864	22	3.1	23	77	8	63	30	2	5	61	1.34
49131326--49131357	15	2.1	15	94	0	55	34	3	0	62	1.11
49132784--49132820	19	1.9	19	94	0	65	62	0	0	37	0.96
49135901--49135933	3	11.0	3	100	0	66	33	0	0	66	0.92
49141400--49141446	8	6.2	8	85	9	64	76	0	10	12	1.02
49141375--49141444	21	3.5	20	77	11	63	71	0	11	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49141407--49141453	21	2.2	22	92	3	78	74	0	12	12	1.07
49141400--49141454	8	7.4	7	84	12	58	74	0	12	12	1.07
49141374--49141454	29	2.8	29	81	10	87	70	0	12	17	1.17
49142657--49142752	48	2.0	48	91	4	158	35	14	18	31	1.91
49142752--49143523	89	8.7	89	86	2	989	29	24	23	23	1.99
49142752--49143427	267	2.5	266	93	0	1111	28	24	23	22	1.99
49143707--49143972	100	2.7	100	83	2	338	32	18	21	27	1.97
49143735--49143972	50	4.8	50	67	8	153	31	18	20	28	1.97
49143977--49144196	45	4.9	45	74	6	162	30	20	24	25	1.99
49143979--49144277	44	6.8	45	77	4	263	30	20	23	26	1.98
49143982--49144317	44	7.7	43	73	7	241	29	21	23	26	1.99
49145639--49145694	3	19.3	3	78	7	62	37	1	0	60	1.07
49145625--49145696	34	2.2	32	76	11	74	33	5	0	61	1.19
49148023--49148085	27	2.4	27	97	2	119	41	9	0	49	1.35
49148125--49148176	27	1.9	27	96	0	95	30	23	32	13	1.93
49148692--49148750	19	3.2	18	80	4	73	38	10	0	50	1.36
49148700--49148750	18	2.7	19	81	3	68	37	9	0	52	1.34
49148826--49148884	19	3.2	19	80	4	84	38	11	0	49	1.40
49148677--49148945	134	2.0	134	94	1	468	42	7	5	44	1.56
49148917--49148975	19	3.2	19	80	4	84	49	0	11	38	1.40
49149529--49149580	27	1.9	27	96	0	95	13	32	23	30	1.93
49149531--49149589	27	2.2	27	87	0	82	13	28	27	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49149622--49149682	27	2.3	27	97	0	113	49	0	8	42	1.32
49150593--49150699	54	2.0	54	87	3	153	16	33	23	26	1.96
49150593--49150716	54	2.3	54	83	2	142	16	33	24	25	1.96
49151329--49151370	22	2.0	21	90	9	68	42	14	16	26	1.86
49154545--49154608	18	3.4	18	80	20	62	7	3	10	78	1.07
49157941--49157970	14	2.1	14	93	0	51	13	6	3	76	1.11
49158989--49159072	42	2.0	42	97	0	159	53	13	16	16	1.73
49159138--49159175	13	2.9	13	92	0	58	65	0	7	26	1.19
49165420--49165450	11	2.8	11	90	0	53	35	6	19	38	1.77
49169343--49169385	3	14.3	3	100	0	86	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228