genome.fa.s23.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  171  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51409087--51409375	126	2.3	126	90	0	443	32	17	21	28	1.96
51410039--51410141	34	3.1	34	79	15	128	51	3	3	40	1.38
51410548--51410590	18	2.4	18	88	0	59	44	9	27	18	1.80
51412389--51412461	11	6.6	11	79	6	85	50	0	27	21	1.49
51412389--51412461	23	3.3	21	87	9	101	50	0	27	21	1.49
51415577--51415724	41	3.6	41	95	0	260	30	22	20	25	1.99
51415577--51415750	41	4.2	41	89	2	242	29	23	20	25	1.99
51419133--51419175	20	2.3	18	84	8	50	2	30	4	62	1.28
51438854--51438879	3	8.7	3	100	0	52	65	0	0	34	0.93
51444196--51444238	22	2.0	22	95	0	77	9	20	27	41	1.83
51444375--51444555	43	4.3	42	76	5	143	30	30	18	19	1.96
51444353--51444534	43	4.4	41	74	11	138	26	31	18	23	1.97
51444907--51445019	21	5.4	21	80	0	109	5	41	16	36	1.71
51444990--51445156	66	2.5	66	86	3	212	13	28	17	40	1.88
51450457--51451141	9	77.8	9	68	21	159	38	1	13	45	1.53
51450462--51450581	16	7.9	16	69	19	96	35	1	17	45	1.58
51450476--51450630	25	6.2	25	77	11	129	38	1	15	45	1.55
51450502--51450621	34	3.4	34	73	14	100	35	1	16	45	1.58
51450637--51450669	16	2.1	16	94	0	57	27	0	27	45	1.54
51450568--51451087	34	16.5	31	75	16	400	39	1	13	45	1.51
51450653--51451074	65	6.5	68	82	9	449	39	1	12	47	1.51
51450654--51451087	99	4.5	96	88	5	513	39	1	12	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51450653--51451137	164	2.9	164	86	6	629	39	1	12	46	1.51
51451074--51451106	16	2.1	16	100	0	66	30	0	24	45	1.53
51451205--51451237	16	2.1	16	94	0	57	27	18	3	51	1.60
51451339--51451417	38	2.1	38	100	0	158	39	22	13	24	1.91
51452173--51452235	33	1.9	33	93	0	108	65	14	0	20	1.27
51452189--51452227	19	2.0	19	85	5	51	69	10	0	20	1.17
51452588--51452677	38	2.4	38	90	7	155	46	11	20	22	1.81
51453857--51453887	11	2.8	11	100	0	62	9	12	0	77	0.99
51454539--51454602	7	9.4	7	86	6	53	35	53	0	10	1.36
51454568--51454592	6	4.2	6	100	0	50	20	64	0	16	1.30
51454589--51454822	89	2.6	89	92	1	380	45	23	1	29	1.61
51455033--51455244	113	1.9	114	82	3	266	33	17	21	28	1.96
51458617--51458676	20	3.0	20	95	0	102	10	40	5	45	1.60
51459378--51459462	31	2.7	32	89	5	120	18	15	23	42	1.88
51459390--51459462	33	2.3	31	88	6	103	20	16	23	39	1.92
51460509--51460590	20	3.8	22	72	20	66	45	0	3	51	1.19
51460705--51461150	9	50.9	9	67	23	233	45	20	0	32	1.57
51460709--51460791	43	1.9	43	87	0	121	49	21	0	28	1.50
51460817--51461115	51	5.3	56	78	19	249	46	19	1	33	1.57
51460807--51461072	113	2.4	106	91	4	424	46	19	0	33	1.55
51460807--51461128	44	7.4	44	69	22	216	45	19	0	34	1.57
51460807--51461169	113	3.3	108	82	12	411	45	19	1	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51467042--51467289	41	6.0	41	89	3	361	26	20	21	31	1.98
51467042--51467289	83	3.0	83	91	1	388	26	20	21	31	1.98
51467997--51468702	41	17.5	41	78	8	619	35	23	19	21	1.95
51467997--51468702	82	8.7	82	78	7	694	35	23	19	21	1.95
51467997--51468702	123	5.8	122	78	8	701	35	23	19	21	1.95
51468426--51468702	122	2.3	123	86	3	396	35	24	19	20	1.96
51468119--51468770	318	2.0	319	91	0	1063	35	23	19	21	1.96
51468739--51468873	40	3.4	40	72	8	116	21	21	19	37	1.94
51469975--51470142	43	4.0	43	74	10	134	29	25	15	29	1.96
51473115--51473161	24	1.9	23	83	12	58	34	12	10	42	1.78
51474635--51474692	28	2.1	28	83	6	73	37	32	0	29	1.58
51474639--51474686	21	2.3	21	78	7	53	37	35	0	27	1.57
51476438--51476541	41	2.5	41	86	7	140	36	34	15	13	1.87
51476575--51476649	37	2.0	37	84	5	98	22	22	17	37	1.94
51476615--51476691	40	1.9	40	84	5	102	25	24	18	31	1.97
51482973--51483003	16	1.9	16	93	0	53	61	32	6	0	1.21
51483879--51483921	21	2.0	21	82	8	52	41	4	2	51	1.35
51487305--51487534	128	1.8	127	89	4	365	41	22	8	27	1.82
51494518--51494563	24	1.9	24	86	0	65	43	6	4	45	1.49
51500522--51500573	16	3.2	16	72	5	50	53	9	5	30	1.57
51500573--51500923	17	19.9	17	70	13	201	45	10	13	30	1.78
51500654--51500696	21	2.0	21	81	0	50	37	6	13	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51500747--51500874	35	3.7	35	82	6	127	49	7	13	29	1.70
51500783--51500915	19	7.4	19	68	15	79	45	10	14	29	1.78
51500855--51500923	35	1.9	35	88	2	102	44	11	14	28	1.80
51501028--51501071	22	2.0	22	86	8	63	40	9	13	36	1.76
51501235--51501290	5	11.0	5	81	11	51	73	0	0	26	0.84
51501435--51501475	11	3.7	11	90	9	66	0	24	0	75	0.80
51501424--51501492	11	6.3	11	72	21	56	0	21	0	78	0.76
51501423--51501491	36	1.9	36	85	11	97	0	23	0	76	0.78
51501625--51501662	15	2.5	15	87	8	51	0	2	13	84	0.73
51501738--51501808	17	4.0	18	80	14	60	0	29	0	70	0.88
51501739--51501809	3	23.0	3	78	13	65	0	30	0	69	0.89
51501748--51501805	28	2.1	28	83	6	73	0	31	0	68	0.89
51501778--51501806	10	2.9	10	100	0	58	0	37	0	62	0.96
51501740--51501806	34	2.0	34	85	5	91	0	31	0	68	0.90
51502178--51502294	30	4.0	28	77	14	101	45	3	21	29	1.68
51502193--51502294	30	3.4	29	85	5	141	45	3	21	29	1.70
51502565--51502782	54	4.1	55	88	8	324	37	17	16	28	1.92
51502761--51502795	14	2.5	14	90	0	52	60	2	17	20	1.49
51502764--51502953	106	1.8	105	88	3	292	40	17	16	25	1.90
51502882--51503137	92	2.9	89	82	9	310	37	18	18	25	1.94
51503042--51503076	17	2.1	17	88	0	52	65	5	11	17	1.43
51503095--51503697	190	3.2	191	96	1	1102	35	20	13	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51503409--51503772	122	2.9	122	82	9	347	34	20	14	31	1.92
51503531--51503835	69	4.4	68	79	6	319	33	23	14	29	1.93
51503531--51503835	138	2.2	138	94	1	531	33	23	14	29	1.93
51503341--51504027	329	2.1	329	96	0	1277	34	21	13	29	1.92
51504052--51504246	72	2.7	70	79	8	205	36	20	13	29	1.91
51503669--51504612	192	4.9	192	96	1	1734	35	20	13	29	1.91
51503669--51504612	386	2.5	386	97	1	1756	35	20	13	29	1.91
51512687--51512787	18	6.0	16	69	18	62	47	11	8	31	1.71
51512689--51512773	33	2.5	34	81	9	95	49	10	8	31	1.67
51512745--51513094	17	19.9	17	69	13	192	45	11	14	29	1.79
51512826--51512868	21	2.0	21	81	0	50	37	6	13	41	1.72
51512919--51513046	35	3.7	35	82	6	127	49	7	13	29	1.70
51513027--51513094	35	1.9	35	88	5	102	45	11	14	27	1.80
51513200--51513243	22	2.0	22	86	8	63	40	9	13	36	1.76
51513408--51513456	17	2.8	17	90	9	73	69	0	0	30	0.89
51513413--51513437	12	2.1	12	100	0	50	68	0	0	32	0.90
51513593--51513651	22	2.6	22	79	10	75	0	20	0	79	0.73
51513593--51513651	11	5.4	11	80	11	68	0	20	0	79	0.73
51513909--51513947	19	2.2	19	86	9	55	7	12	0	79	0.93
51513919--51513978	24	2.6	22	82	10	59	3	26	0	70	1.03
51513919--51513992	14	5.5	13	76	14	53	2	29	0	67	1.04
51513921--51513989	35	2.0	35	85	0	93	2	30	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51514366--51514475	29	3.8	28	79	13	105	46	2	21	29	1.65
51514381--51514475	30	3.2	30	86	4	131	46	3	22	28	1.67
51514704--51514786	33	2.5	33	76	7	87	50	18	13	18	1.78
51520738--51520782	19	2.3	20	84	3	56	55	4	0	40	1.20
51523781--51523826	18	2.5	20	77	22	57	78	2	13	6	1.04
51523819--51523864	21	2.1	22	88	4	67	69	4	23	2	1.17
51535755--51535779	3	8.3	3	100	0	50	0	36	32	32	1.58
51537933--51537991	2	29.5	2	100	0	118	50	0	49	0	1.00
51540267--51540315	19	2.5	20	76	10	55	63	6	8	22	1.44
51540486--51540575	10	8.6	10	70	20	60	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228