genome.fa.s23.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  29  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9169019--9169061	4	10.8	4	100	0	86	25	0	25	48	1.51
9169478--9169519	14	3.1	14	77	16	52	35	26	7	30	1.83
9182814--9182854	20	2.0	22	86	13	61	48	2	2	46	1.28
9182847--9182872	5	5.2	5	100	0	52	19	0	0	80	0.71
9182634--9183285	204	3.0	210	85	8	877	38	5	5	50	1.50
9183243--9183290	21	2.3	21	86	13	64	58	0	2	39	1.10
9183253--9183298	20	2.4	19	85	3	56	58	2	2	36	1.22
9196785--9196825	21	2.0	21	90	0	64	29	21	29	19	1.98
9211029--9211081	27	2.0	27	88	0	79	30	22	15	32	1.94
9211293--9211330	17	2.2	17	90	0	58	39	2	2	55	1.28
9211370--9211418	23	2.1	23	85	7	64	24	10	16	48	1.76
9215355--9215425	20	3.6	19	72	12	63	47	15	8	28	1.74
9217607--9217662	27	2.1	27	93	0	94	25	7	12	55	1.62
9219734--9219771	18	2.1	18	90	9	60	26	5	21	47	1.71
9222242--9222294	25	2.1	25	100	0	106	30	0	26	43	1.55
9224575--9224670	31	3.1	31	95	3	174	31	9	13	45	1.75
9230253--9230348	31	3.1	31	95	3	174	31	9	13	45	1.75
9231355--9231407	27	2.0	26	82	14	63	33	1	5	58	1.32
9233458--9233497	20	2.0	20	90	0	62	27	10	12	50	1.72
9233443--9233509	34	1.9	35	90	3	109	31	8	13	46	1.74
9233437--9233513	14	5.0	15	71	20	52	33	9	14	42	1.77
9233587--9233649	28	2.2	28	82	5	72	36	3	3	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9233831--9233881	26	2.0	26	96	0	93	45	11	13	29	1.79
9241290--9241327	18	2.1	18	90	9	60	68	0	0	31	0.90
9242713--9242783	11	6.3	11	80	16	67	26	26	2	43	1.68
9243536--9243596	29	2.0	30	84	6	79	40	14	14	29	1.86
9244955--9245002	5	9.6	5	100	0	96	58	20	0	20	1.40
9253786--9253833	24	2.0	24	91	0	78	39	6	0	54	1.26
9253960--9254098	4	34.0	4	72	17	83	68	0	30	0	0.95
9253949--9254019	18	4.1	17	78	10	72	64	0	35	0	0.94
9253951--9254109	40	4.2	36	82	11	169	66	0	33	0	0.97
9253965--9254157	40	5.1	40	76	16	150	68	0	30	1	0.97
9253961--9254160	79	2.6	78	81	12	236	69	0	30	1	0.96
9257936--9257974	20	2.0	21	85	10	55	66	10	0	23	1.22
9258338--9258395	11	5.2	11	87	2	80	22	32	1	43	1.64
9258338--9258405	22	3.0	22	84	4	82	23	32	1	42	1.63
9259619--9259643	7	3.6	7	100	0	50	28	0	12	60	1.32
9260850--9261028	22	7.5	22	69	20	94	43	29	0	27	1.56
9260852--9260923	28	2.6	28	80	8	85	41	30	0	27	1.56
9260908--9260969	15	4.1	15	91	2	97	41	25	0	32	1.56
9260851--9261025	52	3.6	50	77	13	195	41	29	0	28	1.56
9261040--9261454	126	3.3	125	91	2	645	28	24	16	30	1.97
9265633--9265674	18	2.5	17	76	7	50	19	9	0	71	1.13
9268207--9268239	17	2.0	16	94	5	57	66	15	12	6	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9272038--9272364	78	4.2	79	80	5	333	43	12	17	26	1.84
9272038--9272364	156	2.1	158	80	5	367	43	12	17	26	1.84
9273684--9273758	25	3.0	25	88	0	123	4	22	24	49	1.67
9275893--9275958	18	3.7	18	95	0	114	33	15	12	39	1.84
9278313--9278373	19	3.1	19	81	9	70	47	1	0	50	1.10
9286777--9286837	27	2.3	26	89	8	97	32	1	0	65	1.02
9286821--9286871	11	4.3	12	75	9	52	41	0	0	58	0.98
9287500--9287529	13	2.2	14	94	5	53	76	6	6	10	1.15
9287603--9287668	31	2.1	31	83	5	80	36	10	10	42	1.74
9290174--9290226	21	2.5	21	82	11	56	22	30	20	26	1.98
9291663--9291701	19	2.1	19	85	0	51	33	5	7	53	1.51
9293202--9293232	13	2.4	13	94	0	53	48	6	0	45	1.28
9293393--9293595	100	2.0	100	100	0	406	39	6	7	45	1.60
9295516--9295559	20	2.2	20	92	4	72	31	0	2	65	1.05
9297502--9297579	41	1.9	41	86	5	113	33	11	3	51	1.56
9297774--9298087	110	2.9	109	85	7	455	31	17	17	34	1.93
9298275--9298319	22	2.0	22	83	8	56	46	6	6	40	1.56
9306448--9306510	27	2.3	28	81	8	76	44	3	0	52	1.17
9307207--9307249	17	2.7	16	82	10	61	69	0	6	23	1.12
9313971--9314022	19	2.7	20	73	8	54	46	7	13	32	1.72
9314078--9314121	21	2.2	21	88	8	65	36	18	4	40	1.71
9321408--9321444	14	2.6	14	86	4	56	40	2	10	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9326831--9326870	21	1.9	21	89	0	62	22	7	25	45	1.78
9330470--9330527	25	2.3	25	90	0	89	24	17	6	51	1.69
9332717--9332754	17	2.3	17	90	4	60	36	7	0	55	1.29
9332726--9332763	17	2.2	17	90	0	58	44	10	0	44	1.38
9336900--9336960	13	4.8	13	76	13	56	42	1	9	45	1.47
9340714--9341085	46	8.6	45	82	12	451	34	14	22	29	1.93
9340796--9340950	36	4.0	36	79	15	184	36	14	20	28	1.92
9340750--9341085	82	4.0	81	87	7	451	34	14	21	29	1.94
9340714--9341085	128	2.9	125	78	16	431	34	14	22	29	1.93
9343077--9343153	24	3.2	24	94	0	136	31	0	25	42	1.55
9346886--9346918	13	2.5	13	100	0	66	36	0	15	48	1.45
9355867--9355896	13	2.4	12	94	5	51	20	0	6	73	1.05
9357144--9357173	8	3.6	8	95	4	51	0	23	0	76	0.78
9359429--9359614	25	7.6	25	72	6	119	19	25	22	32	1.97
9359447--9359584	48	2.8	50	76	10	126	16	26	23	34	1.95
9359423--9359558	73	1.9	73	83	6	177	16	26	22	33	1.96
9359429--9359572	24	5.9	25	70	12	84	17	26	22	33	1.96
9362211--9362243	11	3.1	11	86	8	50	54	0	6	39	1.25
9362211--9362258	20	2.3	21	85	3	62	60	0	6	33	1.22
9363481--9363545	24	2.7	24	80	0	76	38	7	13	40	1.74
9367924--9367994	6	11.8	6	100	0	142	49	16	0	33	1.47
9386713--9386809	27	3.6	28	85	10	114	45	11	22	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9386776--9386843	34	2.0	34	85	0	91	44	8	27	19	1.80
9391485--9391719	86	2.7	86	88	0	353	32	13	14	40	1.84
9394284--9394345	30	2.1	30	84	0	79	33	16	16	33	1.91
9400281--9400336	21	2.8	19	84	10	76	39	8	14	37	1.77
9400282--9400325	21	2.1	21	95	0	79	40	9	11	38	1.73
9400294--9400359	23	3.0	23	82	12	77	37	6	16	39	1.74
9400325--9400369	23	2.0	23	86	4	65	33	4	15	46	1.66
9405868--9406216	44	7.9	44	81	4	384	27	15	26	30	1.96
9405863--9406217	132	2.7	132	96	0	656	28	15	26	30	1.96
9406211--9406764	132	4.2	132	91	2	846	31	18	23	25	1.97
9406353--9406535	44	4.2	44	67	17	121	33	18	22	25	1.97
9406602--9407218	44	14.0	44	65	12	192	30	19	24	25	1.98
9406211--9406764	262	2.1	263	90	1	862	31	18	23	25	1.97
9406590--9406940	176	2.0	176	93	0	603	30	19	24	25	1.98
9406621--9406954	88	3.8	87	68	7	226	29	20	24	25	1.99
9406753--9407289	132	4.1	132	93	0	885	31	20	23	24	1.98
9406453--9407072	308	2.0	308	93	0	1060	30	20	24	24	1.98
9407784--9407881	19	4.8	19	83	13	115	36	7	16	39	1.76
9407785--9407847	21	3.1	21	93	4	103	38	7	14	39	1.75
9407847--9407891	23	2.0	23	86	4	65	33	4	15	46	1.66
9410591--9410635	3	15.0	3	100	0	90	66	0	0	33	0.92
9411872--9411905	14	2.4	14	90	9	52	47	5	14	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9413953--9414001	9	5.4	9	80	9	55	40	22	10	26	1.86
9414606--9414712	19	5.7	19	75	8	94	61	0	1	35	1.13
9414590--9414718	37	3.5	36	75	6	116	62	0	1	35	1.11
9414916--9414943	10	2.8	10	100	0	56	46	0	0	53	1.00
9414857--9414985	56	2.2	57	84	10	156	35	3	3	56	1.36
9415519--9415561	21	2.0	21	82	8	52	44	0	2	53	1.13
9422248--9422881	324	2.0	324	99	0	1241	37	8	19	34	1.83
9423032--9423091	26	2.3	26	88	8	88	13	21	21	43	1.87
9423121--9423169	24	2.0	24	84	0	62	22	30	20	26	1.98
9429537--9429585	21	2.3	22	83	13	59	63	2	2	32	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228