genome.fa.s23.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  143  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43175870--43175919	8	6.6	8	79	6	52	2	22	0	76	0.89
43176992--43177044	20	2.5	22	77	20	60	15	13	0	71	1.14
43182494--43182575	31	2.8	29	77	15	96	8	12	39	40	1.73
43182636--43182695	10	5.9	10	74	16	52	1	21	0	76	0.87
43182632--43182688	11	5.2	11	77	14	55	1	21	0	77	0.86
43182641--43182695	17	3.2	17	80	14	60	1	20	0	78	0.85
43182642--43182695	27	2.0	27	82	7	65	1	18	0	79	0.82
43182629--43182691	21	2.9	22	77	17	78	3	20	0	76	0.93
43182636--43182691	24	2.3	24	82	14	62	1	21	0	76	0.87
43183682--43183784	30	3.5	30	85	11	142	46	7	22	23	1.77
43184390--43184827	40	10.9	40	83	1	473	43	27	15	13	1.84
43190133--43190185	13	4.1	13	82	0	61	32	11	20	35	1.88
43192337--43192550	27	8.0	27	88	3	281	17	19	18	43	1.88
43201626--43201681	19	2.9	19	76	10	60	21	17	21	39	1.93
43201661--43201749	43	2.1	43	89	0	133	19	16	24	39	1.92
43217254--43217315	20	3.4	18	77	22	67	69	9	3	17	1.29
43219502--43219625	42	2.9	43	90	1	187	32	20	20	25	1.98
43219569--43219691	63	2.0	63	91	3	203	30	22	20	26	1.98
43219632--43219772	42	3.4	41	87	3	183	28	22	20	28	1.99
43219502--43219772	147	1.8	147	88	2	409	31	21	20	26	1.98
43219632--43219831	42	4.7	42	80	5	152	30	23	19	27	1.98
43220217--43220286	21	3.3	21	83	0	86	5	42	17	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43220229--43220290	21	3.0	21	85	0	88	6	43	16	33	1.73
43222825--43223141	9	36.3	9	72	14	254	32	1	21	45	1.60
43222822--43222918	25	3.8	25	82	9	117	34	2	20	43	1.64
43222825--43223150	34	9.3	36	73	13	211	31	1	21	45	1.61
43222933--43222971	19	2.1	19	85	9	53	30	0	17	51	1.46
43222876--43223150	88	3.1	88	88	4	362	31	1	21	45	1.61
43223271--43223314	23	1.9	23	95	0	79	38	0	18	43	1.50
43224360--43224397	18	2.1	18	100	0	76	47	15	10	26	1.78
43225062--43225771	365	1.9	365	93	0	1206	35	20	14	29	1.92
43225790--43225819	4	7.5	4	100	0	60	23	0	0	76	0.78
43225829--43225909	24	3.2	23	77	19	90	45	9	0	44	1.37
43225829--43225912	28	3.2	26	75	12	82	44	9	0	46	1.36
43226346--43226385	14	2.9	14	84	0	53	32	45	0	22	1.53
43226621--43226664	21	2.1	21	87	4	63	45	25	0	29	1.54
43227147--43227731	115	5.1	114	83	2	604	30	22	21	25	1.99
43227211--43227704	229	2.2	229	82	2	589	28	22	22	25	1.99
43227532--43227876	183	1.9	184	87	3	516	27	24	24	23	2.00
43228460--43228497	13	2.8	14	80	19	53	65	5	5	23	1.34
43228870--43228955	30	2.9	28	81	11	91	59	4	1	34	1.26
43229093--43229137	17	2.7	17	82	3	56	53	0	8	37	1.32
43229622--43229673	21	2.6	20	93	6	88	36	15	11	36	1.84
43231857--43231941	43	2.0	42	88	2	125	32	9	2	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43233369--43233543	69	2.5	70	81	7	198	52	15	23	8	1.70
43234934--43235100	89	1.9	89	83	5	221	27	27	22	22	1.99
43235127--43235646	44	11.6	44	69	14	224	30	17	22	29	1.97
43235304--43235691	44	8.6	45	68	16	128	28	17	25	29	1.97
43235621--43235900	103	2.7	103	84	2	339	30	17	22	30	1.96
43236065--43236402	44	7.6	44	75	4	216	30	18	22	28	1.97
43236063--43236402	133	2.6	131	80	2	356	30	18	22	27	1.97
43236334--43236647	139	2.3	139	90	1	479	30	18	21	28	1.97
43241897--43242147	114	2.2	113	85	1	349	29	15	17	36	1.91
43243964--43244017	25	2.2	25	89	0	81	25	11	44	18	1.83
43244131--43244177	24	2.1	21	84	11	58	31	4	40	23	1.74
43245485--43245615	27	4.9	27	79	9	133	41	19	13	25	1.88
43245485--43245615	53	2.4	54	82	6	160	41	19	13	25	1.88
43248576--43248669	22	4.3	21	82	2	80	29	26	0	43	1.55
43248580--43248625	12	4.0	12	80	11	60	30	21	0	47	1.51
43248578--43248669	44	2.1	44	86	8	125	29	27	0	43	1.55
43248671--43248711	22	1.9	22	90	5	66	31	34	0	34	1.58
43248619--43248720	51	2.0	50	83	11	127	32	33	0	34	1.58
43248753--43248808	28	2.0	29	92	3	96	37	0	1	60	1.07
43248753--43248816	28	2.2	29	88	2	94	37	0	1	60	1.06
43248906--43248962	24	2.3	23	78	18	62	28	0	5	66	1.13
43251092--43251127	18	2.1	18	89	5	56	50	19	0	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43251080--43251164	24	3.6	24	79	9	111	48	23	0	28	1.51
43251080--43251177	24	4.1	24	75	10	76	45	25	1	27	1.60
43251113--43251668	28	20.5	28	73	21	363	46	24	0	28	1.54
43251120--43251285	62	2.8	62	86	7	215	48	25	0	25	1.56
43251233--43251519	23	11.3	23	80	16	227	46	25	0	28	1.53
43251524--43251676	23	6.2	23	80	18	175	47	22	0	30	1.52
43254845--43255122	123	2.3	123	82	7	341	32	24	14	28	1.94
43262558--43262612	19	2.9	19	89	5	76	21	9	34	34	1.85
43264751--43264782	16	1.9	17	93	6	57	40	0	6	53	1.26
43266773--43266802	12	2.5	12	100	0	60	26	40	26	6	1.81
43276669--43276724	22	2.5	22	88	8	78	39	44	0	16	1.47
43276670--43276719	11	4.5	11	73	16	50	40	46	0	14	1.44
43276669--43276731	22	2.9	22	86	9	67	38	46	1	14	1.54
43286032--43286703	47	14.3	47	91	3	1046	28	28	8	33	1.87
43287962--43287986	13	1.9	13	100	0	50	36	16	16	32	1.90
43299812--43299842	14	2.2	14	94	0	53	61	12	3	22	1.46
43310582--43310642	28	2.2	29	85	11	83	44	4	1	49	1.33
43330992--43331032	21	1.9	22	85	5	57	46	2	7	43	1.44
43330990--43331039	21	2.3	20	80	12	55	44	2	6	48	1.39
43331855--43331928	30	2.5	31	80	6	89	39	16	10	33	1.83
43338755--43338839	42	2.0	42	97	0	161	35	29	17	17	1.93
43338970--43339459	27	18.2	27	80	7	444	44	18	15	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43339651--43339753	26	4.0	26	92	0	170	14	20	24	40	1.90
43339864--43340001	28	5.0	28	79	0	161	23	22	23	30	1.99
43339859--43340001	56	2.6	56	88	2	216	23	22	23	30	1.99
43343670--43343712	18	2.4	18	88	0	59	62	2	16	18	1.43
43343664--43343711	18	2.7	18	78	15	55	60	2	14	22	1.45
43345874--43345920	15	3.2	15	77	22	55	68	0	25	6	1.13
43350188--43350247	24	2.5	25	83	8	79	36	33	5	25	1.78
43362865--43363387	47	11.1	47	92	1	823	31	9	30	28	1.88
43363509--43363584	37	2.1	37	85	5	100	25	19	28	26	1.99
43365744--43365867	30	4.1	30	90	1	185	26	23	5	44	1.75
43365754--43365828	15	5.0	15	68	12	64	26	24	6	42	1.79
43370435--43370558	30	4.1	30	93	1	194	25	23	6	44	1.77
43370445--43370552	15	7.2	15	65	12	69	25	21	7	45	1.78
43370734--43370879	43	3.4	43	97	0	274	21	14	35	28	1.93
43370861--43370934	29	2.6	29	89	4	105	25	16	32	25	1.96
43371245--43371440	40	4.9	40	80	5	175	26	21	27	25	2.00
43371245--43371441	80	2.5	81	80	5	213	25	22	26	24	2.00
43374673--43375338	47	14.1	47	93	0	1071	32	9	29	28	1.88
43374673--43375283	284	2.2	284	96	0	1123	32	9	28	29	1.88
43375457--43375535	37	2.1	37	86	4	106	26	18	29	25	1.98
43382698--43383174	236	2.0	236	97	0	909	30	29	14	25	1.95
43383292--43383358	27	2.5	27	80	0	71	28	17	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43383312--43383389	27	2.9	27	83	5	86	23	16	19	41	1.90
43383342--43383403	27	2.3	27	94	0	106	16	17	22	43	1.87
43383342--43383415	27	2.7	27	85	4	87	18	16	20	44	1.87
43391838--43391983	41	3.6	41	89	0	202	35	13	31	19	1.91
43391856--43391922	21	3.2	21	66	19	59	29	13	35	20	1.91
43391959--43392000	20	2.1	20	90	0	66	45	14	28	11	1.80
43395169--43395291	29	4.3	28	78	5	122	37	20	17	24	1.94
43400769--43400842	29	2.6	29	86	4	96	27	16	31	25	1.96
43414504--43414743	50	4.7	50	79	4	203	27	20	29	23	1.99
43414563--43414743	100	1.8	100	81	0	227	27	20	30	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228