genome.fa.s23.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  151  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45447585--45447675	30	2.9	30	77	8	85	63	2	24	9	1.36
45447615--45447654	18	2.2	18	86	0	53	62	0	27	10	1.27
45447666--45447708	15	2.8	15	77	16	52	60	2	30	6	1.35
45450338--45450403	20	3.3	20	82	0	78	28	34	13	22	1.92
45452167--45452204	10	3.8	10	83	13	51	28	31	18	21	1.97
45452166--45452203	20	1.9	20	94	0	67	28	34	18	18	1.95
45452167--45452227	20	3.0	20	83	9	63	29	27	14	27	1.95
45452177--45452223	10	4.6	10	80	15	51	31	27	14	25	1.95
45452710--45452734	13	1.9	13	100	0	50	16	32	16	36	1.90
45453684--45453747	28	2.3	27	79	12	76	31	3	9	56	1.47
45455063--45455088	13	2.0	13	100	0	52	46	7	0	46	1.31
45455478--45455516	20	1.9	21	89	5	62	35	12	28	23	1.91
45460178--45460211	14	2.4	14	85	14	52	70	5	0	23	1.09
45468249--45468287	13	2.9	13	88	7	60	23	10	2	64	1.37
45468249--45468282	13	2.5	14	95	4	61	17	5	2	73	1.16
45480353--45480432	13	6.1	13	71	21	60	13	12	3	70	1.31
45480382--45480435	28	1.9	28	88	0	81	16	9	5	68	1.35
45482239--45482285	20	2.3	20	81	0	58	21	14	36	27	1.93
45483953--45484056	48	2.2	48	84	10	133	14	24	1	59	1.45
45484121--45484176	21	2.7	21	72	5	51	8	17	1	71	1.21
45484120--45484176	14	4.1	14	75	16	57	8	17	1	71	1.19
45484118--45484257	41	3.5	39	77	14	124	7	19	3	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45484138--45484244	6	17.7	6	66	7	56	6	18	3	71	1.24
45485326--45485351	13	2.0	13	100	0	52	15	0	7	76	0.99
45486867--45486913	20	2.3	20	85	0	67	21	12	36	29	1.91
45488509--45488582	30	2.5	30	82	8	89	21	18	18	40	1.91
45488509--45488573	20	3.2	20	71	16	53	23	20	16	40	1.92
45494613--45494660	12	4.0	12	97	0	87	75	2	8	14	1.13
45497120--45497166	20	2.3	20	85	0	67	29	36	12	21	1.91
45499035--45499186	27	5.6	27	93	3	241	26	13	28	30	1.94
45499035--45499186	55	2.8	55	94	0	259	26	13	28	30	1.94
45505196--45505258	21	3.0	21	88	2	81	33	31	4	30	1.78
45505476--45505517	19	2.3	18	88	8	59	76	4	7	11	1.15
45524861--45524907	20	2.3	20	81	0	58	29	34	12	23	1.92
45526395--45526444	13	3.5	14	75	19	50	72	4	6	18	1.22
45545076--45545126	15	3.5	15	75	5	59	3	19	1	74	1.07
45546317--45546363	20	2.3	20	85	7	60	25	29	17	27	1.97
45547924--45548104	100	1.8	100	90	2	292	25	14	27	32	1.95
45548891--45548944	20	2.7	20	82	0	63	24	20	18	37	1.94
45548891--45548964	30	2.5	30	86	8	98	21	20	18	39	1.93
45548891--45548955	20	3.2	20	71	16	53	23	21	16	38	1.93
45552400--45552448	10	4.9	10	78	9	55	26	16	30	26	1.97
45552402--45552448	20	2.3	20	89	7	69	25	17	31	25	1.97
45554325--45554364	12	3.3	12	82	0	53	15	22	2	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45554394--45554440	15	3.1	15	84	9	60	12	17	0	70	1.17
45555202--45555387	45	4.1	45	93	0	300	25	19	15	38	1.92
45559770--45559818	10	4.9	10	78	9	55	26	16	30	26	1.97
45559772--45559818	20	2.3	20	89	7	69	25	17	31	25	1.97
45564446--45564482	9	4.0	9	86	6	56	35	21	13	29	1.92
45564446--45564483	19	2.0	19	94	0	67	36	21	13	28	1.91
45565562--45565623	10	5.9	10	74	10	52	33	32	3	30	1.74
45565562--45565624	21	3.0	21	88	2	90	33	33	3	30	1.74
45567195--45567241	15	3.1	15	84	9	60	70	0	17	12	1.17
45567271--45567346	12	6.3	12	68	17	50	61	1	25	11	1.38
45567294--45567327	15	2.3	15	89	0	50	67	0	29	2	1.05
45570724--45570806	10	7.9	10	76	10	76	33	32	2	31	1.71
45570724--45570807	21	4.0	21	92	1	123	33	33	2	30	1.71
45573335--45573367	11	2.9	11	95	4	57	81	6	3	9	0.95
45573425--45573454	10	2.9	10	95	5	51	80	10	3	6	1.01
45573436--45573520	28	3.2	27	76	5	66	75	4	9	10	1.18
45573473--45573535	27	2.3	27	86	10	85	74	6	14	4	1.18
45574548--45574711	12	13.4	12	70	12	57	67	2	18	12	1.34
45574570--45574677	6	17.7	6	69	10	58	71	3	17	7	1.24
45574574--45574632	18	3.3	18	78	0	64	72	6	13	6	1.25
45574639--45574688	14	3.6	14	80	17	59	74	0	18	8	1.06
45574638--45574699	27	2.3	26	84	13	81	69	0	19	11	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45578331--45578385	19	2.8	20	80	8	67	76	1	14	7	1.08
45579133--45579157	13	1.9	13	100	0	50	16	32	16	36	1.90
45580115--45580165	13	3.9	13	89	7	77	74	1	7	15	1.13
45581337--45581370	18	1.9	18	88	5	52	52	2	35	8	1.47
45583246--45583270	13	1.9	13	100	0	50	16	32	16	36	1.90
45589407--45589460	22	2.5	22	93	0	90	31	33	5	29	1.80
45591028--45591076	10	4.9	10	78	9	55	26	30	16	26	1.97
45591028--45591074	20	2.3	20	89	7	69	25	31	17	25	1.97
45594325--45594358	18	1.9	18	88	5	52	8	35	2	52	1.47
45594441--45594472	15	2.1	16	94	5	57	6	21	0	71	1.07
45595424--45595476	15	3.3	15	78	14	61	15	5	5	73	1.21
45595433--45595468	19	1.9	19	94	5	65	22	8	5	63	1.43
45595412--45595486	11	5.6	13	73	26	52	13	5	6	74	1.19
45600431--45600500	31	2.4	30	83	9	92	14	18	0	67	1.24
45602119--45602164	20	2.3	20	80	0	56	23	13	32	30	1.93
45603660--45603701	18	2.3	18	87	0	57	71	4	16	7	1.26
45606901--45606947	20	2.3	20	85	0	67	29	36	12	21	1.91
45608431--45608514	11	6.7	12	70	23	50	72	5	8	13	1.26
45608441--45608500	12	4.5	13	76	17	61	73	3	8	15	1.20
45611427--45611459	12	2.8	12	95	0	57	9	0	9	81	0.87
45614977--45615011	18	1.9	18	88	11	54	22	20	0	57	1.41
45615906--45615939	13	2.6	13	95	0	59	8	0	8	82	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45619456--45619490	18	1.9	18	88	11	54	22	20	0	57	1.41
45630690--45630731	19	2.3	18	88	8	59	11	7	4	76	1.15
45630951--45631016	21	3.0	22	86	4	80	30	4	30	34	1.78
45634584--45634624	17	2.4	18	80	8	50	14	24	4	56	1.58
45637011--45637162	27	5.6	27	93	3	241	30	28	13	26	1.94
45637011--45637162	55	2.8	55	94	0	259	30	28	13	26	1.94
45639026--45639072	20	2.3	20	85	0	67	21	12	36	29	1.91
45641460--45641504	12	3.8	12	96	0	81	11	6	2	80	0.99
45656347--45656386	17	2.4	17	91	0	62	20	42	22	15	1.88
45656356--45656388	17	1.9	17	100	0	66	12	39	30	18	1.87
45658366--45658438	22	3.5	22	65	25	59	28	4	21	45	1.70
45658359--45658499	39	3.6	39	88	2	203	31	4	21	42	1.74
45665080--45665449	182	2.0	182	96	0	677	29	20	13	37	1.90
45674523--45674552	16	1.9	16	93	6	53	73	3	10	13	1.21
45684473--45684985	47	10.8	47	95	2	884	31	8	30	29	1.87
45685104--45685182	37	2.1	37	88	0	113	24	17	31	26	1.97
45686395--45686738	40	8.6	40	91	2	550	23	21	28	26	1.99
45690142--45690565	47	8.9	47	94	1	704	32	8	29	29	1.87
45690368--45690443	22	3.3	22	64	10	62	30	11	30	27	1.92
45690684--45690762	37	2.1	37	88	0	113	24	17	31	26	1.97
45703170--45703240	26	2.7	26	95	0	124	36	19	25	18	1.94
45703419--45703606	27	7.0	27	83	6	238	18	20	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45703419--45703617	81	2.5	81	87	5	278	18	19	18	43	1.88
45710475--45710585	28	4.0	28	87	0	150	30	26	21	21	1.98
45710692--45710762	26	2.7	26	86	0	106	36	16	25	21	1.94
45710940--45711299	27	13.4	26	78	6	328	19	19	19	42	1.90
45710941--45711299	54	6.7	54	84	1	425	18	19	19	42	1.90
45710940--45711299	81	4.5	81	82	3	422	19	19	19	42	1.90
45714375--45714450	29	2.6	29	82	0	80	40	17	13	28	1.87
45721098--45721139	21	2.0	21	90	0	66	14	23	19	42	1.87
45721118--45721215	40	2.5	40	81	8	119	12	18	26	42	1.85
45723804--45723851	17	2.6	19	81	15	57	37	12	0	50	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228