genome.fa.s23.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  202  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59316133--59316286	41	3.8	41	98	0	290	25	28	21	24	1.99
59317841--59317879	16	2.2	19	86	13	57	33	5	0	61	1.18
59322167--59322234	14	4.9	14	77	8	50	52	0	13	33	1.40
59322181--59322235	21	2.7	20	86	5	74	52	0	12	34	1.40
59322243--59322307	28	2.3	29	84	7	89	47	0	30	21	1.51
59322716--59322755	21	1.9	21	85	10	55	20	0	2	77	0.88
59325033--59325087	21	2.6	21	83	8	76	30	38	9	21	1.85
59332528--59332571	9	4.9	9	91	0	52	22	4	25	47	1.70
59332521--59332571	18	2.8	18	81	0	57	25	5	21	47	1.73
59332732--59332756	12	2.1	12	100	0	50	16	24	36	24	1.94
59335911--59335954	19	2.4	18	80	3	52	52	2	9	36	1.46
59335927--59336332	108	3.7	107	89	1	614	29	15	19	34	1.93
59340440--59340491	22	2.5	20	81	12	61	76	0	21	1	0.87
59340448--59340485	16	2.4	15	87	12	58	84	0	15	0	0.63
59340449--59340487	11	3.5	11	82	10	53	82	0	17	0	0.68
59341296--59341328	9	3.9	9	84	15	52	75	0	12	12	1.04
59341296--59341328	16	2.1	16	100	0	66	75	0	12	12	1.04
59342557--59343531	173	5.6	176	86	4	1053	28	21	23	25	1.99
59342580--59343531	88	10.9	88	89	2	1024	29	21	23	25	1.99
59342995--59343222	44	5.2	44	70	12	189	24	22	25	27	2.00
59345235--59345269	16	2.2	16	89	0	52	40	0	0	60	0.97
59345413--59345483	12	5.8	12	72	6	52	19	2	8	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59345582--59345624	18	2.4	18	80	7	52	51	2	9	37	1.47
59345597--59346028	108	4.0	108	91	2	672	29	16	18	34	1.93
59349118--59349142	5	5.0	5	100	0	50	20	0	40	40	1.52
59349718--59349753	17	2.1	17	89	0	54	83	0	16	0	0.65
59349745--59349774	15	2.0	15	93	0	51	63	0	13	23	1.29
59359873--59359944	17	4.2	18	74	15	62	2	26	0	70	1.00
59360450--59360646	63	3.1	63	81	4	209	21	19	30	28	1.98
59363969--59364005	3	12.3	3	100	0	74	35	0	0	64	0.94
59367428--59367456	4	7.2	4	100	0	58	24	0	0	75	0.80
59369488--59369518	4	7.8	4	92	0	53	70	0	3	25	1.02
59370801--59370878	35	2.2	34	80	14	88	7	6	42	43	1.59
59377090--59377199	43	2.6	43	74	11	107	33	21	15	29	1.94
59377175--59377269	43	2.2	43	83	9	113	29	13	24	32	1.93
59381414--59381490	33	2.6	28	74	18	73	27	24	27	20	1.99
59381447--59381504	28	2.1	27	81	9	64	31	24	22	22	1.99
59381614--59381664	26	2.0	26	84	0	66	39	21	21	17	1.93
59381852--59381975	27	4.6	27	86	2	169	14	20	22	41	1.89
59383065--59383426	95	3.9	95	73	9	240	30	22	15	31	1.95
59391440--59391485	19	2.3	20	85	3	58	47	2	17	32	1.60
59396459--59396491	17	1.9	17	93	0	57	15	6	12	66	1.42
59397173--59397466	98	3.0	98	96	0	536	36	24	10	28	1.88
59397742--59397766	9	2.8	9	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59401567--59401601	11	3.1	11	87	4	52	34	11	11	42	1.77
59401989--59402059	34	2.1	34	97	0	133	43	21	16	18	1.88
59402529--59402622	23	4.1	23	87	0	143	48	4	24	22	1.68
59407032--59407125	23	4.1	23	87	0	143	48	4	24	22	1.68
59408192--59408316	22	5.7	21	72	13	67	33	15	18	32	1.92
59408192--59408275	43	1.9	44	82	2	107	33	14	19	33	1.91
59408399--59408466	28	2.4	28	80	4	75	14	19	39	26	1.90
59415140--59415292	41	3.7	40	84	5	198	22	20	25	30	1.98
59415598--59415747	14	10.4	14	69	11	79	21	0	36	42	1.58
59415600--59415747	21	6.9	21	71	13	68	21	0	35	41	1.58
59415633--59415662	15	2.0	15	93	0	51	20	0	36	43	1.52
59415633--59415747	7	16.0	7	74	7	70	20	0	38	41	1.52
59415681--59415747	15	4.6	15	75	12	68	17	0	43	38	1.50
59415906--59415965	15	4.1	15	74	6	52	21	0	38	40	1.54
59415516--59416054	234	2.2	241	89	5	801	31	2	21	44	1.64
59415917--59415980	29	2.2	29	82	0	74	20	0	39	40	1.52
59416716--59416865	72	2.0	73	89	8	232	18	42	5	34	1.72
59417294--59417506	86	2.5	86	83	5	234	33	8	15	42	1.78
59417489--59417585	40	2.4	40	79	5	97	29	6	14	49	1.67
59417530--59417614	40	2.1	40	85	8	111	30	4	12	51	1.60
59418230--59418259	10	3.1	10	95	4	53	73	0	0	26	0.84
59418666--59418715	18	2.8	18	78	0	55	26	8	2	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59423654--59423885	43	5.4	42	87	4	261	24	15	27	32	1.95
59423654--59423893	129	1.9	127	83	5	313	24	14	27	33	1.94
59423654--59423895	86	2.8	86	85	4	314	23	14	27	34	1.94
59427599--59427657	25	2.3	25	91	2	91	27	10	22	40	1.85
59428411--59428450	14	2.9	14	88	0	53	57	20	2	20	1.52
59428523--59428703	89	2.0	90	95	2	328	32	13	16	37	1.88
59429108--59429149	20	2.1	20	86	8	59	52	9	0	38	1.34
59430121--59430211	44	2.1	44	91	0	146	47	2	6	43	1.41
59434599--59434643	6	7.7	6	82	5	56	2	15	2	80	0.92
59439389--59439455	26	2.6	25	81	9	82	40	10	16	32	1.82
59451717--59451749	17	1.9	17	88	11	50	48	6	27	18	1.71
59451871--59452119	27	9.3	26	87	3	300	40	20	20	18	1.91
59451871--59452118	81	3.1	81	85	7	335	40	20	20	18	1.91
59452231--59452261	13	2.3	14	94	5	55	70	0	0	29	0.87
59452260--59452376	30	3.9	29	80	7	119	29	21	3	45	1.68
59452624--59452673	10	5.2	10	80	7	59	70	0	30	0	0.88
59452627--59452669	19	2.3	19	88	11	63	69	0	30	0	0.88
59452739--59452770	3	10.3	3	93	6	55	68	0	31	0	0.90
59452739--59452783	22	2.0	22	87	8	65	73	0	26	0	0.84
59452885--59452958	32	2.3	31	84	11	87	70	21	6	1	1.18
59453089--59453176	13	6.4	13	74	20	81	80	0	19	0	0.71
59453088--59453184	8	12.0	8	77	14	92	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59453088--59453182	15	5.8	17	80	8	76	80	0	20	0	0.72
59453101--59453184	25	3.4	25	79	6	93	82	0	17	0	0.68
59453730--59453772	22	2.0	22	86	8	63	53	16	4	25	1.62
59453768--59453953	17	10.6	17	75	10	151	30	12	9	47	1.73
59453763--59453930	17	9.6	18	75	14	154	29	12	9	48	1.72
59453768--59453965	35	5.7	34	75	11	161	31	11	10	46	1.73
59453891--59454017	34	3.4	36	72	14	107	34	10	12	42	1.77
59453798--59453965	70	2.4	67	78	9	183	30	11	10	46	1.75
59454461--59454559	26	3.8	26	79	2	74	17	22	22	38	1.93
59454490--59454560	26	2.7	26	88	0	97	15	22	22	39	1.92
59465175--59465209	15	2.2	16	95	5	63	37	0	0	62	0.95
59465224--59465273	16	3.2	16	70	18	52	52	0	0	48	1.00
59465214--59465291	29	2.9	26	77	17	70	55	0	1	43	1.08
59474975--59475026	27	1.9	27	84	7	70	44	17	7	30	1.77
59503224--59503273	22	2.3	22	92	0	82	14	28	12	46	1.79
59512647--59512738	3	29.3	3	68	12	51	29	5	3	61	1.34
59512611--59512679	18	3.7	19	75	14	63	31	4	2	60	1.31
59516363--59516395	16	2.2	15	89	10	50	45	12	0	42	1.41
59519237--59519298	26	2.4	26	88	0	97	25	20	20	32	1.98
59526200--59526390	23	8.3	23	91	2	303	29	26	21	21	1.99
59529394--59529442	22	2.2	23	88	3	73	24	4	0	71	1.03
59542518--59543613	548	2.0	547	98	0	2120	35	14	19	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59545989--59546062	17	4.4	17	74	6	60	29	10	16	43	1.82
59545991--59546097	51	2.1	51	84	3	135	30	8	16	43	1.78
59553474--59553522	23	2.1	23	88	3	71	20	18	16	44	1.86
59553925--59553986	26	2.4	26	80	0	79	24	19	22	33	1.97
59556261--59556304	16	2.6	17	82	10	56	59	13	11	15	1.62
59556262--59556304	17	2.6	17	82	14	54	60	13	9	16	1.58
59564947--59564983	6	6.2	6	100	0	74	32	0	0	67	0.91
59572164--59573260	549	2.0	547	99	0	2149	35	14	19	29	1.92
59574440--59574475	2	18.5	2	94	5	65	47	0	0	52	1.00
59575650--59575723	17	4.4	17	74	6	60	29	10	16	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228